jgi.p|Nanoce1779_2|594920, gene_6406 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594920
Unique Namegene_6406
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:561137..562812 -

Link to JBrowse

Properties
Property NameValue
TranscriptId595006
ProteinId594920
Product nameDNA glycosylase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:561137..562812 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006284base-excision repair
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO:0003676nucleic acid binding
GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0008270zinc ion binding
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01870NO20G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594920mRNA_6406-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594920mRNA_6406Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|594920

>mRNA_6406-protein ID=mRNA_6406-protein|Name=jgi.p|Nanoce1779_2|594920|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MSATARQSQLLRFLAFLLFFARPPLATAYRLSLQMVEGHGCHRVVAAHRR
LLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEP
PVVVHIHFGMSGAFSVFPLPGKTHTPTTRLSLVNKDINISASLSAMTCVH
GGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAG
IGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSIL
TVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQP
LLAGTELAAARKQAVAVARESEEFVSHCAGEDSATLTPAKMTVALLRSKL
GALGESTRGKKAELVSRLSQTLVAAGPAAVMAIAKQEEEGKEMVATTMNV
TAAESLPATPLKVRPGTLHLAAATSAQRAAREKRRAGENRAVEHVALHAD
KAGVEEEEETLDVLEEVLISPLSGDHKLKRKTAVRKSKRQRLESGKREWA
AEVPVPGSVGMMDDVLTLETENGETDETST*
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Synonyms
Publications