jgi.p|Nanoce1779_2|594920, mRNA_6406 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594920
Unique Name	mRNA_6406
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1676
Alignment location	scaffold_15:561137..562812 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595006
Track	FilteredModels2
ProteinId	594920

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:561137..562812 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594920	gene_6406	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594920	mRNA_6406-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6406	CDS_6406	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:561137..562812-
coding sequence from alignment at scaffold_15:561137..562812-

mRNA sequence

>mRNA_6406 ID=mRNA_6406|Name=jgi.p|Nanoce1779_2|594920|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp
CAGCTTTAATACGTTCACAGGTACGGCCTGCATGAGCGCTACGGCACGTC
AGTCTCAACTGCTGCGTTTTTTGGCGTTCCTTCTCTTCTTCGCCAGGCCC
CCACTTGCCACCGCATATCGCCTTTCCCTGCAAATGGTAGAGGGCCATGG
CTGTCATCGCGTCGTCGCGGCGCACCGTCGGCTCTTGCTAGGACATGTCT
TCAAGGCCACTTCTCCCAATGGTCGCTTCACCGAGGGAGCCAAGCTAATC
GACGGAAGGCGTCTCGCACGAATCGAAGCCGTAGGTAAGAACCTATTCTA
TTTTTGGGAGAAAGCCCTTCCCGACGAGCCACCTGTCGTCGTCCACATTC
ACTTCGGTATGTCGGGAGCCTTTTCCGTCTTTCCACTGCCGGGAAAGACG
CACACGCCAACGACACGCTTGAGCCTGGTCAACAAGGATATAAATATTTC
AGCTTCTCTTTCGGCAATGACTTGTGTCCATGGAGGCCCGGACCTTTACG
AGAGCAAGTACAACGCCCTCGGACCGGACCCCCTGCGCGAGGATGCAGAT
AAAGAGCGGCTGTGGCTGAAAATGCAAAGCACAAGCAAGGCCATCGGACA
AGTTCTCATGGATCAATCGTTCATCGCCGGGATAGGGAATATATACCGCG
CTGAAATCCTCTTCAAAAGCGGCCTTCATCCGGAGCAGCCAGCCTGCACC
ATTCCAAAGTCTACTTTCGAGACGCTCTGGATGCACTCGGTCCTTCTCCT
TCAGCGAGGGTTTACCACTGGCTCAATTTTGACCGTAGATCAGGCCGAGG
CTGCTCTCTTGGGCCCCCCCTGGACTCGACGTTATATTTACAATCACAGG
CATTGCGGGCGCTGTGGAAGCGCCGTTCGAAATTGGACGATGGCAGGGAG
GACAGTTTACTGCTGTCCCACCTGCCAGCCGCTTTTGGCAGGCACTGAGC
TCGCAGCTGCGCGAAAGCAGGCCGTCGCCGTCGCACGGGAATCCGAGGAG
TTCGTCTCGCACTGTGCGGGAGAAGACTCTGCGACCTTGACTCCGGCTAA
GATGACTGTAGCGTTGCTGCGATCGAAACTGGGGGCGCTGGGTGAGTCGA
CCAGGGGAAAGAAGGCCGAGTTGGTGTCTCGTCTTTCGCAGACCTTGGTG
GCTGCGGGACCGGCGGCTGTCATGGCCATAGCCAAGCAGGAAGAGGAAGG
GAAGGAGATGGTGGCGACTACAATGAACGTGACAGCGGCAGAATCACTAC
CCGCCACACCGCTGAAGGTCAGGCCAGGAACTTTGCATTTGGCTGCGGCG
ACGTCGGCGCAGCGTGCGGCACGGGAAAAAAGGCGCGCAGGAGAGAATCG
AGCCGTTGAGCATGTTGCTTTACATGCTGATAAAGCAGGAGTGGAGGAAG
AGGAGGAGACCTTGGACGTATTGGAGGAGGTTCTTATCTCTCCCTTGTCG
GGTGACCATAAACTGAAGCGAAAAACGGCGGTGAGGAAGAGCAAGCGGCA
GCGTCTGGAAAGTGGCAAGAGAGAGTGGGCGGCCGAAGTGCCTGTGCCAG
GCTCGGTGGGCATGATGGATGACGTACTCACCTTGGAGACTGAGAATGGA
GAAACGGATGAAACTTCCACGTAGGCAGTTTTACAAATATAACCTAAAGT
TAAATAATAGATGACATGTCGCAGCA

protein sequence of jgi.p|Nanoce1779_2|594920

>mRNA_6406-protein ID=mRNA_6406-protein|Name=jgi.p|Nanoce1779_2|594920|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MSATARQSQLLRFLAFLLFFARPPLATAYRLSLQMVEGHGCHRVVAAHRR
LLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEP
PVVVHIHFGMSGAFSVFPLPGKTHTPTTRLSLVNKDINISASLSAMTCVH
GGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAG
IGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSIL
TVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQP
LLAGTELAAARKQAVAVARESEEFVSHCAGEDSATLTPAKMTVALLRSKL
GALGESTRGKKAELVSRLSQTLVAAGPAAVMAIAKQEEEGKEMVATTMNV
TAAESLPATPLKVRPGTLHLAAATSAQRAAREKRRAGENRAVEHVALHAD
KAGVEEEEETLDVLEEVLISPLSGDHKLKRKTAVRKSKRQRLESGKREWA
AEVPVPGSVGMMDDVLTLETENGETDETST*

mRNA from alignment at scaffold_15:561137..562812-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6406 ID=mRNA_6406|Name=jgi.p|Nanoce1779_2|594920|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at scaffold_15:561137..562812- (Nannochloropsis oceanica)
CAGCTTTAATACGTTCACAGGTACGGCCTGCATGAGCGCTACGGCACGTC
AGTCTCAACTGCTGCGTTTTTTGGCGTTCCTTCTCTTCTTCGCCAGGCCC
CCACTTGCCACCGCATATCGCCTTTCCCTGCAAATGGTAGAGGGCCATGG
CTGTCATCGCGTCGTCGCGGCGCACCGTCGGCTCTTGCTAGGACATGTCT
TCAAGGCCACTTCTCCCAATGGTCGCTTCACCGAGGGAGCCAAGCTAATC
GACGGAAGGCGTCTCGCACGAATCGAAGCCGTAGGTAAGAACCTATTCTA
TTTTTGGGAGAAAGCCCTTCCCGACGAGCCACCTGTCGTCGTCCACATTC
ACTTCGGTATGTCGGGAGCCTTTTCCGTCTTTCCACTGCCGGGAAAGACG
CACACGCCAACGACACGCTTGAGCCTGGTCAACAAGGATATAAATATTTC
AGCTTCTCTTTCGGCAATGACTTGTGTCCATGGAGGCCCGGACCTTTACG
AGAGCAAGTACAACGCCCTCGGACCGGACCCCCTGCGCGAGGATGCAGAT
AAAGAGCGGCTGTGGCTGAAAATGCAAAGCACAAGCAAGGCCATCGGACA
AGTTCTCATGGATCAATCGTTCATCGCCGGGATAGGGAATATATACCGCG
CTGAAATCCTCTTCAAAAGCGGCCTTCATCCGGAGCAGCCAGCCTGCACC
ATTCCAAAGTCTACTTTCGAGACGCTCTGGATGCACTCGGTCCTTCTCCT
TCAGCGAGGGTTTACCACTGGCTCAATTTTGACCGTAGATCAGGCCGAGG
CTGCTCTCTTGGGCCCCCCCTGGACTCGACGTTATATTTACAATCACAGG
CATTGCGGGCGCTGTGGAAGCGCCGTTCGAAATTGGACGATGGCAGGGAG
GACAGTTTACTGCTGTCCCACCTGCCAGCCGCTTTTGGCAGGCACTGAGC
TCGCAGCTGCGCGAAAGCAGGCCGTCGCCGTCGCACGGGAATCCGAGGAG
TTCGTCTCGCACTGTGCGGGAGAAGACTCTGCGACCTTGACTCCGGCTAA
GATGACTGTAGCGTTGCTGCGATCGAAACTGGGGGCGCTGGGTGAGTCGA
CCAGGGGAAAGAAGGCCGAGTTGGTGTCTCGTCTTTCGCAGACCTTGGTG
GCTGCGGGACCGGCGGCTGTCATGGCCATAGCCAAGCAGGAAGAGGAAGG
GAAGGAGATGGTGGCGACTACAATGAACGTGACAGCGGCAGAATCACTAC
CCGCCACACCGCTGAAGGTCAGGCCAGGAACTTTGCATTTGGCTGCGGCG
ACGTCGGCGCAGCGTGCGGCACGGGAAAAAAGGCGCGCAGGAGAGAATCG
AGCCGTTGAGCATGTTGCTTTACATGCTGATAAAGCAGGAGTGGAGGAAG
AGGAGGAGACCTTGGACGTATTGGAGGAGGTTCTTATCTCTCCCTTGTCG
GGTGACCATAAACTGAAGCGAAAAACGGCGGTGAGGAAGAGCAAGCGGCA
GCGTCTGGAAAGTGGCAAGAGAGAGTGGGCGGCCGAAGTGCCTGTGCCAG
GCTCGGTGGGCATGATGGATGACGTACTCACCTTGGAGACTGAGAATGGA
GAAACGGATGAAACTTCCACGTAGGCAGTTTTACAAATATAACCTAAAGT
TAAATAATAGATGACATGTCGCAGCA

Coding sequence (CDS) from alignment at scaffold_15:561137..562812-

>mRNA_6406 ID=mRNA_6406|Name=jgi.p|Nanoce1779_2|594920|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_15:561137..562812- (Nannochloropsis oceanica)
ATGAGCGCTACGGCACGTCAGTCTCAACTGCTGCGTTTTTTGGCGTTCCT
TCTCTTCTTCGCCAGGCCCCCACTTGCCACCGCATATCGCCTTTCCCTGC
AAATGGTAGAGGGCCATGGCTGTCATCGCGTCGTCGCGGCGCACCGTCGG
CTCTTGCTAGGACATGTCTTCAAGGCCACTTCTCCCAATGGTCGCTTCAC
CGAGGGAGCCAAGCTAATCGACGGAAGGCGTCTCGCACGAATCGAAGCCG
TAGGTAAGAACCTATTCTATTTTTGGGAGAAAGCCCTTCCCGACGAGCCA
CCTGTCGTCGTCCACATTCACTTCGGTATGTCGGGAGCCTTTTCCGTCTT
TCCACTGCCGGGAAAGACGCACACGCCAACGACACGCTTGAGCCTGGTCA
ACAAGGATATAAATATTTCAGCTTCTCTTTCGGCAATGACTTGTGTCCAT
GGAGGCCCGGACCTTTACGAGAGCAAGTACAACGCCCTCGGACCGGACCC
CCTGCGCGAGGATGCAGATAAAGAGCGGCTGTGGCTGAAAATGCAAAGCA
CAAGCAAGGCCATCGGACAAGTTCTCATGGATCAATCGTTCATCGCCGGG
ATAGGGAATATATACCGCGCTGAAATCCTCTTCAAAAGCGGCCTTCATCC
GGAGCAGCCAGCCTGCACCATTCCAAAGTCTACTTTCGAGACGCTCTGGA
TGCACTCGGTCCTTCTCCTTCAGCGAGGGTTTACCACTGGCTCAATTTTG
ACCGTAGATCAGGCCGAGGCTGCTCTCTTGGGCCCCCCCTGGACTCGACG
TTATATTTACAATCACAGGCATTGCGGGCGCTGTGGAAGCGCCGTTCGAA
ATTGGACGATGGCAGGGAGGACAGTTTACTGCTGTCCCACCTGCCAGCCG
CTTTTGGCAGGCACTGAGCTCGCAGCTGCGCGAAAGCAGGCCGTCGCCGT
CGCACGGGAATCCGAGGAGTTCGTCTCGCACTGTGCGGGAGAAGACTCTG
CGACCTTGACTCCGGCTAAGATGACTGTAGCGTTGCTGCGATCGAAACTG
GGGGCGCTGGGTGAGTCGACCAGGGGAAAGAAGGCCGAGTTGGTGTCTCG
TCTTTCGCAGACCTTGGTGGCTGCGGGACCGGCGGCTGTCATGGCCATAG
CCAAGCAGGAAGAGGAAGGGAAGGAGATGGTGGCGACTACAATGAACGTG
ACAGCGGCAGAATCACTACCCGCCACACCGCTGAAGGTCAGGCCAGGAAC
TTTGCATTTGGCTGCGGCGACGTCGGCGCAGCGTGCGGCACGGGAAAAAA
GGCGCGCAGGAGAGAATCGAGCCGTTGAGCATGTTGCTTTACATGCTGAT
AAAGCAGGAGTGGAGGAAGAGGAGGAGACCTTGGACGTATTGGAGGAGGT
TCTTATCTCTCCCTTGTCGGGTGACCATAAACTGAAGCGAAAAACGGCGG
TGAGGAAGAGCAAGCGGCAGCGTCTGGAAAGTGGCAAGAGAGAGTGGGCG
GCCGAAGTGCCTGTGCCAGGCTCGGTGGGCATGATGGATGACGTACTCAC
CTTGGAGACTGAGAATGGAGAAACGGATGAAACTTCCACGTAG

Synonyms

Publications