NO19G02700, NO19G02700 (gene) Nannochloropsis oceanica

Overview
NameNO19G02700
Unique NameNO19G02700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4575
Alignment locationchr19:820706..825280 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:820706..825280 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO19G02700 vs. NCBI_GenBank
Match: XP_005852381.1 (hypothetical protein NGA_0687000, partial [Nannochloropsis gaditana CCMP526] >EKU23504.1 hypothetical protein NGA_0687000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.9 bits (263), Expect = 2.300e-19
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    5 ESILPAFLHTIELCLGPSVFMLIMSFAIFVKAPSTTFVNAMQHFGGGIVLSAVATELLPAMSKQKHSWQN 75
            +SI  AF  T+ELC GPSVFM +MSFAIF+K PS TFVNAMQHFGGGIVLSAVATELLPAMS+ KH   N
Sbjct:    7 KSIFVAFWRTMELCSGPSVFMFLMSFAIFIKPPSVTFVNAMQHFGGGIVLSAVATELLPAMSRHKHRCVN 76
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BLAST of NO19G02700 vs. NCBI_GenBank
Match: EWM23774.1 (hypothetical protein Naga_100411g5 [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-13
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:   49 GGGIVLSAVATELLPAMSKQKHSWQNTVATLVGFFGGVAMMVGVAHF 96
            GGGIVLSAVATELLPAMS+ KHSWQNT+ATLVGFF GV MMV VAHF
Sbjct:    4 GGGIVLSAVATELLPAMSRHKHSWQNTLATLVGFFTGVVMMVSVAHF 50
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BLAST of NO19G02700 vs. NCBI_GenBank
Match: EWM20214.1 (hypothetical protein Naga_100777g3 [Nannochloropsis gaditana])

HSP 1 Score: 67.8 bits (164), Expect = 7.000e-8
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 0 
Query:    5 ESILPAFLHTIELCLGPSVFMLIMSFAIFVKAPSTTFVNAMQHFG 50
            ESI  AF  T+ELC GPSVFM +MSFAIF+K PS TFVNAMQH G
Sbjct:   53 ESIFVAFWRTMELCSGPSVFMFLMSFAIFIKPPSVTFVNAMQHLG 97
The following BLAST results are available for this feature:
BLAST of NO19G02700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005852381.12.300e-1975.71hypothetical protein NGA_0687000, partial [Nannoch... [more]
EWM23774.13.200e-1387.23hypothetical protein Naga_100411g5 [Nannochloropsi... [more]
EWM20214.17.000e-873.33hypothetical protein Naga_100777g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR099ncniR099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02700.2NO19G02700.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G02700.1NO19G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643673gene_10946Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100411g5gene6687Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02700.2NO19G02700.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G02700.1NO19G02700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02700 ID=NO19G02700|Name=NO19G02700|organism=Nannochloropsis oceanica|type=gene|length=4575bp
GCTTTGAGACCGCGCATGGCCTGTGTGTAGGTGAACATAGAGAGAGCGTA
CGAGCTCGTTACTTTTCATGGTATTGTTTGTTGGGCTTCAAGTCACCAGG
AGCTCTACATCTACCGTATTTCAACTTGCTCTGTCTCCCTTAACGTCACA
AATTATCATAGGGAATGTGTGCGAGATGTGGGTCCACGAACATATAGATC
AGATAAAATTAATACCGAAGTTTAAGACCGCAGTATTCTCTCCCGGGGGT
CCGGGCCATGCTTGCTTCTCTCTCTTTAGGGGGCCCTTAGGCATTCGAGG
ACAGAGGCATATCTAGTAGCGTGTCAGATTTTGACTCATTTTGATTTGTT
TACGTGTTGTGTGTGTCAGACCCGGCATCTGCTGTTGCTGGGACAGGGAC
ACTCGAGTGATAATGAAAGACCCCCTTATCGACTAACAAGCCACAAATAC
ATCCACCTGATTACCTAGTCCTACATGCATATTTACATGCTGATGTGCCT
CGCTTTTTTGGGGGTTTTGGGGTCATTTCAAGCACTTGCTTCCGCTTAAC
TCTCCTTTACTTTTCCACAGGCGGCATCCTCGCGATATGGCTATTCACGA
GTCGATCTTGCCCGCCTTCCTTCACACCATCGAGCTATGCCTGGGCCCGA
GCGTGTTCATGCTCATCATGTCCTTTGCTATCTTCGTCAAGGCGCCCAGC
ACCACCTTTGTGAATGCCATGCAACACTTTGgtacgtgaaaagctaaggg
aggaggggaggccgattgaaggttagagagagggtgactgtggcggatga
cagggaattggccaacatatcttgcatgattccttgaagtgtatgactct
atcgtcttttttaggtctgacaggtgctattcttgtgagtgtgcaacatg
gttattgattgcatagatttatcctcccctagcatgttaacccacttccc
tcttcctactttcctactttctactccctcacacagGTGGCGGCATCGTC
CTCTCTGCCGTGGCCACGGAGCTTCTGCCTGCCATGAGCAAGCAAAAGCA
CAGgtagctgtggagaaagaagaaatggagggtgggtggactttcgctgg
ggatagaatggaggatgcgcgggtgcagcaggcgcacaagctcttcacct
gagacgcaaggaaacgagagagactctcagctgtcttttcttttttcttc
attccgactttacctctcacctatccgtctcatcctctctcctccttcca
ttccccctctgccctggcagCTGGCAGAATACGGTGGCGACCCTCGTCGG
GTTTTTCGGTGGGGTGGCCATGATGGTTGGCGTCGCACACTTCTGCGGCG
AGCCCGAAGAGGAGGAGAACGAAAAAGAAGAAGAGGAAGAAGAGGAGGAT
GGTATGGAGAAGAAGAGGGAGCATGCCGTCCGTGACGATCTCTTGCCGGT
GATGCCCAAGGCCAGCTCGCTCTCGGCTGGCAAGGTCCTCCCGCCCTCCC
TCCCGCCCTCCCTCCCGCCCTCCCCCCTCGTTGGGAGGAATGGAATGGTC
CGTGCTCCCACTTTGAGCCGACGCCGCAGTCTGATGGAGACGTACCGGgt
gcgtacggtgggaggagaggggggagggagggagggagggaaaaggaggc
gtggagtggatgttgatatttatgtatgtaaaagaatattgtgtaatatt
gagaggaatgtcgtttatatcgtcaggctagcgacgaagatcggaacgga
tgaagacgcctgaaagatgacgctgccatccgtgcatccattcatccatc
catccacccgtccttccctccctcccgtcatttcttcctccattccgtca
tcacagCAAGCAGCCCTCGCGAAAGCCTGCTCCCAGGGCGCTGCCTCCCC
CTTGCTCATGCGCCGGGCCGTTACCGTATCGAACCCCCGCACTGCCCGTG
GTCCTTCCTCCTCTGTTGCCGCACTTGATCTCTCCGTCTCTCCCCCCCCT
CCTCCTCCTCGTCCCCTCACCCCTCTAAGCGCATGGCCAAGAGCAAGACT
GCCAACGTCGGCCGCACCATATTCGAAGAGCATATTCCCTCCTCCTCCCT
CGTTCCCTCGTTCTCCTCCTCCAACCTACCCACTGAACACACCTCTCTCC
TCCTCTCCTCCTCCTCCTCCTCCTCCACCGCTGCCCTGGAAAATGGCGAG
CTCGATCGGAACCTCCCCTTCATCCCCTCCTCCCCTTCGCCCTACGCTCC
CCCTCCCTGGACACTGATCATCCCTGTCTATGTGGACTCGGTGATGGATG
GCTTGCTCATCGGGCTGGCTGCTGTGGCTGgtaggagggaggacggggga
ggggaagggagggaggaaagggagggagggagacgagtggttcttggttg
atctgaccttcccttgccttgtttcctggtcctcctgtaccgccctcttc
atccttcgtttcatttcctccctccttttctccctctctccctcgattca
tagGCAAGAGCGCGGGCCTGATCATGTCCATCGCGCTGACCATAGAGATG
GGCTTCCTTGGACTCACCTTCTCGGCGGGGGTCTCCAAAGTAGGCAGGCA
GGGAGGCAGGCCGAGTGGGAGGGAGGGAGGGAGGGAAGGAGGAAGGGAGA
AGGAAACTGTGGAGGGTAGGATTGCTCCGTGCAAGTGTAGACAAAGGAAT
GCGAGGAAAAGAAGAGGAGGGAGTCACGTCCACACCCCACCCTTACGGAG
GACAGCTAGAGCACACTTCCTAGCTCCCTCACGACCGGTACTGAATCTCC
CTCCTCCTCTCCTTCCCTCCCTTCACCCGCCCTCTGCTTTTTTGCACGCC
AGGTGGAACCTGTGCTTCGCTACGCCCTGGTGGTTGGGGCGCCGTTGATG
ATTCTTGTGGGAGGGACCGTGGGCGCCTTGGCAGCAGCACTGCTGGCAGC
CAACCCCACCTATCAGgtaagcgacagagggcatgaaggagggaggtaga
tagacaggaagcagactcagatcgcactcatcccctccatttctccaccc
tcactatagGTGGGCTTGCTGTCTTTTGGCGCGGCGTCCCTGCTGTATCT
GATCACGGAGGAGCTGCTGGTGGAGGCGCACGAGGAGGGGGGCCCGCATG
TGTGGTACGTGGACCTAATGTTCTTTGTGGGCTTCATTGCCTCCGTCTTG
CTAGAGCAGAACATCCAGGACGCCAGTGGAGAGGGCGCTTAGAATAGAGA
AAGACGGGCTGACGGCTCGGTGGCTCAGTGAGGGGGATGGAGGAGGATTT
TCTTTTGTCGTGCATGGGTTTTCTTCTTTCTCTGCAAGCATAAGTGAGAG
AAGAGGATTCTGGCTAGGAAGGATGAAGAAGAAGCTCGAGATGGGCTTAT
GGAGGGATAGCAATGGGGAGGATGGGAGGGAGCGCGAGATGGACTTGAAA
AGGAATAACAGCGGAAACACGCTGGAGGAGGCTAATTGAATGAGGGGAAA
GACGCAGGGGATTCGAATACGAGAACAGGAAAATTGATGATGCTTATGGC
ACTTACAATCAGCGCACAAGCAAGCAAGAGTGAAGTGATATTATGGTCTC
GGCAAGTAAAGCGGTATTGATGAGCACCAGCAGCGAGGAGCAATAACAGC
GGTGGCAGCAGAAGGAAAGGAATTGTAATGTATTTTCTTTTCATCGATTC
GAGAGACTTCGATGGGGAAAGATGAAAGTAAAAATGAAACATTTGAGCAC
GTTAAAGAAAAAAGAGTGAGCCAAAAAGCAGCACTCCCATGCCGATGCGC
TTCTGCGTCCTCTTTTATTCTGTGCGTACGTCGGGTCCATCAACCTCTCG
AGGGACATCTTTCGCGATTCAGATCCATACAAGACAACAAACTAACACAG
CGGGTCCGTTTTCGCCTCAAATCCACACATGAAACAATTTCAAACAGCCC
GAATGCTTTTGCTCAAGCCCAGAAAACAGGATATGGGTGGCCCATTGGCC
CATTCATGCTCTTGGGGCCATAGTTCAGCGCCCATATCCGCATCAACCAT
TGGCACCCATCATCTCCAGCATTTCCATTGTCCTATTCATCCATCATGTC
CATTGCCGAGCTAATTTCTCCCTCGCAAGTGTGTTTTGTCGAAAAAAACC
TTTCCTAACCTCTCCTTGGCCAATAAAGAGATGGGGGGAAACTCGAACCT
TCAAGTGACGTGTACGAGCGGGCACCTCTTTTTGTCGGGTTTGGACTCAC
GCTCTTCTGCTTTAGGCATCGGAAGGCCTATAAGACCACAGCAACATTTC
CACATTTCCAGCAAAGTAACTGATTGAGGCCCAGATCCGGGCCATCTGTG
TAGACCTGTCCGGGAGCAAGAAAGACAATTCTGCAAAAGCTTTGACCGAC
TCCCTCCCCACCTGACGGGTTATAGTGGGCGATGTGGATCACACACGCAT
TCGACCGACCTACACCAAATTTCAAGAGACGGTAAAGGTTCAGCCATGAC
CCGCATCGATCTCACGAAAGGAATCATTGAATTCAATCATTAAAAAAGAG
ATTAATAAAGTTTAAAAGAAATTTG
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protein sequence of NO19G02700.2

>NO19G02700.2-protein ID=NO19G02700.2-protein|Name=NO19G02700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAIHESILPAFLHTIELCLGPSVFMLIMSFAIFVKAPSTTFVNAMQHFGG
GIVLSAVATELLPAMSKQKHSWQNTVATLVGFFGGVAMMVGVAHFCGEPE
EEENEKEEEEEEEDGMEKKREHAVRDDLLPVMPKASSLSAGKVLPPSLPP
SLPPSPLVGRNGMVRAPTLSRRRSLMETYRQAALAKACSQGAASPLLMRR
AVTVSNPRTARGPSSSVAALDLSVSPPPPPPRPLTPLSAWPRARLPTSAA
PYSKSIFPPPPSFPRSPPPTYPLNTPLSSSPPPPPPPPLPWKMASSIGTS
PSSPPPLRPTLPLPGH*
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protein sequence of NO19G02700.1

>NO19G02700.1-protein ID=NO19G02700.1-protein|Name=NO19G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAIHESILPAFLHTIELCLGPSVFMLIMSFAIFVKAPSTTFVNAMQHFGG
GIVLSAVATELLPAMSKQKHSWQNTVATLVGFFGGVAMMVGVAHFCGEPE
EEENEKEEEEEEEDGMEKKREHAVRDDLLPVMPKASSLSAGKVLPPSLPP
SLPPSPLVGRNGMVRAPTLSRRRSLMETYRQAALAKACSQGAASPLLMRR
AVTVSNPRTARGPSSSVAALDLSVSPPPPPPRPLTPLSAWPRARLPTSAA
PYSKSIFPPPPSFPRSPPPTYPLNTPLSSSPPPPPPPPLPWKMASSIGTS
PSSPPPLRPTLPLPGH*
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Synonyms
Publications