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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr19 | genome | chr19:820706..825280 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G02700.2 vs.
Match: XP_005852381.1 (hypothetical protein NGA_0687000, partial [Nannochloropsis gaditana CCMP526]; EKU23504.1 hypothetical protein NGA_0687000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 105.9 bits (263), Expect = 2.300e-19 Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 0
Query: 5 ESILPAFLHTIELCLGPSVFMLIMSFAIFVKAPSTTFVNAMQHFGGGIVLSAVATELLPAMSKQKHSWQN 75
+SI AF T+ELC GPSVFM +MSFAIF+K PS TFVNAMQHFGGGIVLSAVATELLPAMS+ KH N
Sbjct: 7 KSIFVAFWRTMELCSGPSVFMFLMSFAIFIKPPSVTFVNAMQHFGGGIVLSAVATELLPAMSRHKHRCVN 76
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G02700.2 ID=NO19G02700.2|Name=NO19G02700.2|organism=Nannochloropsis oceanica|type=mRNA|length=3579bp
GCTTTGAGACCGCGCATGGCCTGTGTGTAGGTGAACATAGAGAGAGCGTA
CGAGCTCGTTACTTTTCATGGTATTGTTTGTTGGGCTTCAAGTCACCAGG
AGCTCTACATCTACCGTATTTCAACTTGCTCTGTCTCCCTTAACGTCACA
AATTATCATAGGGAATGTGTGCGAGATGTGGGTCCACGAACATATAGATC
AGATAAAATTAATACCGAAGTTTAAGACCGCAGTATTCTCTCCCGGGGGT
CCGGGCCATGCTTGCTTCTCTCTCTTTAGGGGGCCCTTAGGCATTCGAGG
ACAGAGGCATATCTAGTAGCGTGTCAGATTTTGACTCATTTTGATTTGTT
TACGTGTTGTGTGTGTCAGACCCGGCATCTGCTGTTGCTGGGACAGGGAC
ACTCGAGTGATAATGAAAGACCCCCTTATCGACTAACAAGCCACAAATAC
ATCCACCTGATTACCTAGTCCTACATGCATATTTACATGCTGATGTGCCT
CGCTTTTTTGGGGGTTTTGGGGTCATTTCAAGCACTTGCTTCCGCTTAAC
TCTCCTTTACTTTTCCACAGGCGGCATCCTCGCGATATGGCTATTCACGA
GTCGATCTTGCCCGCCTTCCTTCACACCATCGAGCTATGCCTGGGCCCGA
GCGTGTTCATGCTCATCATGTCCTTTGCTATCTTCGTCAAGGCGCCCAGC
ACCACCTTTGTGAATGCCATGCAACACTTTGGTGGCGGCATCGTCCTCTC
TGCCGTGGCCACGGAGCTTCTGCCTGCCATGAGCAAGCAAAAGCACAGCT
GGCAGAATACGGTGGCGACCCTCGTCGGGTTTTTCGGTGGGGTGGCCATG
ATGGTTGGCGTCGCACACTTCTGCGGCGAGCCCGAAGAGGAGGAGAACGA
AAAAGAAGAAGAGGAAGAAGAGGAGGATGGTATGGAGAAGAAGAGGGAGC
ATGCCGTCCGTGACGATCTCTTGCCGGTGATGCCCAAGGCCAGCTCGCTC
TCGGCTGGCAAGGTCCTCCCGCCCTCCCTCCCGCCCTCCCTCCCGCCCTC
CCCCCTCGTTGGGAGGAATGGAATGGTCCGTGCTCCCACTTTGAGCCGAC
GCCGCAGTCTGATGGAGACGTACCGGCAAGCAGCCCTCGCGAAAGCCTGC
TCCCAGGGCGCTGCCTCCCCCTTGCTCATGCGCCGGGCCGTTACCGTATC
GAACCCCCGCACTGCCCGTGGTCCTTCCTCCTCTGTTGCCGCACTTGATC
TCTCCGTCTCTCCCCCCCCTCCTCCTCCTCGTCCCCTCACCCCTCTAAGC
GCATGGCCAAGAGCAAGACTGCCAACGTCGGCCGCACCATATTCGAAGAG
CATATTCCCTCCTCCTCCCTCGTTCCCTCGTTCTCCTCCTCCAACCTACC
CACTGAACACACCTCTCTCCTCCTCTCCTCCTCCTCCTCCTCCTCCACCG
CTGCCCTGGAAAATGGCGAGCTCGATCGGAACCTCCCCTTCATCCCCTCC
TCCCCTTCGCCCTACGCTCCCCCTCCCTGGACACTGATCATCCCTGTCTA
TGTGGACTCGGTGATGGATGGCTTGCTCATCGGGCTGGCTGCTGTGGCTG
GCAAGAGCGCGGGCCTGATCATGTCCATCGCGCTGACCATAGAGATGGGC
TTCCTTGGACTCACCTTCTCGGCGGGGGTCTCCAAAGTAGGCAGGCAGGG
AGGCAGGCCGAGTGGGAGGGAGGGAGGGAGGGAAGGAGGAAGGGAGAAGG
AAACTGTGGAGGGTAGGATTGCTCCGTGCAAGTGTAGACAAAGGAATGCG
AGGAAAAGAAGAGGAGGGAGTCACGTCCACACCCCACCCTTACGGAGGAC
AGCTAGAGCACACTTCCTAGCTCCCTCACGACCGGTACTGAATCTCCCTC
CTCCTCTCCTTCCCTCCCTTCACCCGCCCTCTGCTTTTTTGCACGCCAGG
TGGAACCTGTGCTTCGCTACGCCCTGGTGGTTGGGGCGCCGTTGATGATT
CTTGTGGGAGGGACCGTGGGCGCCTTGGCAGCAGCACTGCTGGCAGCCAA
CCCCACCTATCAGGTGGGCTTGCTGTCTTTTGGCGCGGCGTCCCTGCTGT
ATCTGATCACGGAGGAGCTGCTGGTGGAGGCGCACGAGGAGGGGGGCCCG
CATGTGTGGTACGTGGACCTAATGTTCTTTGTGGGCTTCATTGCCTCCGT
CTTGCTAGAGCAGAACATCCAGGACGCCAGTGGAGAGGGCGCTTAGAATA
GAGAAAGACGGGCTGACGGCTCGGTGGCTCAGTGAGGGGGATGGAGGAGG
ATTTTCTTTTGTCGTGCATGGGTTTTCTTCTTTCTCTGCAAGCATAAGTG
AGAGAAGAGGATTCTGGCTAGGAAGGATGAAGAAGAAGCTCGAGATGGGC
TTATGGAGGGATAGCAATGGGGAGGATGGGAGGGAGCGCGAGATGGACTT
GAAAAGGAATAACAGCGGAAACACGCTGGAGGAGGCTAATTGAATGAGGG
GAAAGACGCAGGGGATTCGAATACGAGAACAGGAAAATTGATGATGCTTA
TGGCACTTACAATCAGCGCACAAGCAAGCAAGAGTGAAGTGATATTATGG
TCTCGGCAAGTAAAGCGGTATTGATGAGCACCAGCAGCGAGGAGCAATAA
CAGCGGTGGCAGCAGAAGGAAAGGAATTGTAATGTATTTTCTTTTCATCG
ATTCGAGAGACTTCGATGGGGAAAGATGAAAGTAAAAATGAAACATTTGA
GCACGTTAAAGAAAAAAGAGTGAGCCAAAAAGCAGCACTCCCATGCCGAT
GCGCTTCTGCGTCCTCTTTTATTCTGTGCGTACGTCGGGTCCATCAACCT
CTCGAGGGACATCTTTCGCGATTCAGATCCATACAAGACAACAAACTAAC
ACAGCGGGTCCGTTTTCGCCTCAAATCCACACATGAAACAATTTCAAACA
GCCCGAATGCTTTTGCTCAAGCCCAGAAAACAGGATATGGGTGGCCCATT
GGCCCATTCATGCTCTTGGGGCCATAGTTCAGCGCCCATATCCGCATCAA
CCATTGGCACCCATCATCTCCAGCATTTCCATTGTCCTATTCATCCATCA
TGTCCATTGCCGAGCTAATTTCTCCCTCGCAAGTGTGTTTTGTCGAAAAA
AACCTTTCCTAACCTCTCCTTGGCCAATAAAGAGATGGGGGGAAACTCGA
ACCTTCAAGTGACGTGTACGAGCGGGCACCTCTTTTTGTCGGGTTTGGAC
TCACGCTCTTCTGCTTTAGGCATCGGAAGGCCTATAAGACCACAGCAACA
TTTCCACATTTCCAGCAAAGTAACTGATTGAGGCCCAGATCCGGGCCATC
TGTGTAGACCTGTCCGGGAGCAAGAAAGACAATTCTGCAAAAGCTTTGAC
CGACTCCCTCCCCACCTGACGGGTTATAGTGGGCGATGTGGATCACACAC
GCATTCGACCGACCTACACCAAATTTCAAGAGACGGTAAAGGTTCAGCCA
TGACCCGCATCGATCTCACGAAAGGAATCATTGAATTCAATCATTAAAAA
AGAGATTAATAAAGTTTAAAAGAAATTTG back to topprotein sequence of NO19G02700.2 >NO19G02700.2-protein ID=NO19G02700.2-protein|Name=NO19G02700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAIHESILPAFLHTIELCLGPSVFMLIMSFAIFVKAPSTTFVNAMQHFGG
GIVLSAVATELLPAMSKQKHSWQNTVATLVGFFGGVAMMVGVAHFCGEPE
EEENEKEEEEEEEDGMEKKREHAVRDDLLPVMPKASSLSAGKVLPPSLPP
SLPPSPLVGRNGMVRAPTLSRRRSLMETYRQAALAKACSQGAASPLLMRR
AVTVSNPRTARGPSSSVAALDLSVSPPPPPPRPLTPLSAWPRARLPTSAA
PYSKSIFPPPPSFPRSPPPTYPLNTPLSSSPPPPPPPPLPWKMASSIGTS
PSSPPPLRPTLPLPGH* back to topmRNA from alignment at chr19:820706..825280- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G02700.2 ID=NO19G02700.2|Name=NO19G02700.2|organism=Nannochloropsis oceanica|type=mRNA|length=4575bp|location=Sequence derived from alignment at chr19:820706..825280- (Nannochloropsis oceanica)
GCTTTGAGACCGCGCATGGCCTGTGTGTAGGTGAACATAGAGAGAGCGTA
CGAGCTCGTTACTTTTCATGGTATTGTTTGTTGGGCTTCAAGTCACCAGG
AGCTCTACATCTACCGTATTTCAACTTGCTCTGTCTCCCTTAACGTCACA
AATTATCATAGGGAATGTGTGCGAGATGTGGGTCCACGAACATATAGATC
AGATAAAATTAATACCGAAGTTTAAGACCGCAGTATTCTCTCCCGGGGGT
CCGGGCCATGCTTGCTTCTCTCTCTTTAGGGGGCCCTTAGGCATTCGAGG
ACAGAGGCATATCTAGTAGCGTGTCAGATTTTGACTCATTTTGATTTGTT
TACGTGTTGTGTGTGTCAGACCCGGCATCTGCTGTTGCTGGGACAGGGAC
ACTCGAGTGATAATGAAAGACCCCCTTATCGACTAACAAGCCACAAATAC
ATCCACCTGATTACCTAGTCCTACATGCATATTTACATGCTGATGTGCCT
CGCTTTTTTGGGGGTTTTGGGGTCATTTCAAGCACTTGCTTCCGCTTAAC
TCTCCTTTACTTTTCCACAGGCGGCATCCTCGCGATATGGCTATTCACGA
GTCGATCTTGCCCGCCTTCCTTCACACCATCGAGCTATGCCTGGGCCCGA
GCGTGTTCATGCTCATCATGTCCTTTGCTATCTTCGTCAAGGCGCCCAGC
ACCACCTTTGTGAATGCCATGCAACACTTTGGTACGTGAAAAGCTAAGGG
AGGAGGGGAGGCCGATTGAAGGTTAGAGAGAGGGTGACTGTGGCGGATGA
CAGGGAATTGGCCAACATATCTTGCATGATTCCTTGAAGTGTATGACTCT
ATCGTCTTTTTTAGGTCTGACAGGTGCTATTCTTGTGAGTGTGCAACATG
GTTATTGATTGCATAGATTTATCCTCCCCTAGCATGTTAACCCACTTCCC
TCTTCCTACTTTCCTACTTTCTACTCCCTCACACAGGTGGCGGCATCGTC
CTCTCTGCCGTGGCCACGGAGCTTCTGCCTGCCATGAGCAAGCAAAAGCA
CAGGTAGCTGTGGAGAAAGAAGAAATGGAGGGTGGGTGGACTTTCGCTGG
GGATAGAATGGAGGATGCGCGGGTGCAGCAGGCGCACAAGCTCTTCACCT
GAGACGCAAGGAAACGAGAGAGACTCTCAGCTGTCTTTTCTTTTTTCTTC
ATTCCGACTTTACCTCTCACCTATCCGTCTCATCCTCTCTCCTCCTTCCA
TTCCCCCTCTGCCCTGGCAGCTGGCAGAATACGGTGGCGACCCTCGTCGG
GTTTTTCGGTGGGGTGGCCATGATGGTTGGCGTCGCACACTTCTGCGGCG
AGCCCGAAGAGGAGGAGAACGAAAAAGAAGAAGAGGAAGAAGAGGAGGAT
GGTATGGAGAAGAAGAGGGAGCATGCCGTCCGTGACGATCTCTTGCCGGT
GATGCCCAAGGCCAGCTCGCTCTCGGCTGGCAAGGTCCTCCCGCCCTCCC
TCCCGCCCTCCCTCCCGCCCTCCCCCCTCGTTGGGAGGAATGGAATGGTC
CGTGCTCCCACTTTGAGCCGACGCCGCAGTCTGATGGAGACGTACCGGGT
GCGTACGGTGGGAGGAGAGGGGGGAGGGAGGGAGGGAGGGAAAAGGAGGC
GTGGAGTGGATGTTGATATTTATGTATGTAAAAGAATATTGTGTAATATT
GAGAGGAATGTCGTTTATATCGTCAGGCTAGCGACGAAGATCGGAACGGA
TGAAGACGCCTGAAAGATGACGCTGCCATCCGTGCATCCATTCATCCATC
CATCCACCCGTCCTTCCCTCCCTCCCGTCATTTCTTCCTCCATTCCGTCA
TCACAGCAAGCAGCCCTCGCGAAAGCCTGCTCCCAGGGCGCTGCCTCCCC
CTTGCTCATGCGCCGGGCCGTTACCGTATCGAACCCCCGCACTGCCCGTG
GTCCTTCCTCCTCTGTTGCCGCACTTGATCTCTCCGTCTCTCCCCCCCCT
CCTCCTCCTCGTCCCCTCACCCCTCTAAGCGCATGGCCAAGAGCAAGACT
GCCAACGTCGGCCGCACCATATTCGAAGAGCATATTCCCTCCTCCTCCCT
CGTTCCCTCGTTCTCCTCCTCCAACCTACCCACTGAACACACCTCTCTCC
TCCTCTCCTCCTCCTCCTCCTCCTCCACCGCTGCCCTGGAAAATGGCGAG
CTCGATCGGAACCTCCCCTTCATCCCCTCCTCCCCTTCGCCCTACGCTCC
CCCTCCCTGGACACTGATCATCCCTGTCTATGTGGACTCGGTGATGGATG
GCTTGCTCATCGGGCTGGCTGCTGTGGCTGGTAGGAGGGAGGACGGGGGA
GGGGAAGGGAGGGAGGAAAGGGAGGGAGGGAGACGAGTGGTTCTTGGTTG
ATCTGACCTTCCCTTGCCTTGTTTCCTGGTCCTCCTGTACCGCCCTCTTC
ATCCTTCGTTTCATTTCCTCCCTCCTTTTCTCCCTCTCTCCCTCGATTCA
TAGGCAAGAGCGCGGGCCTGATCATGTCCATCGCGCTGACCATAGAGATG
GGCTTCCTTGGACTCACCTTCTCGGCGGGGGTCTCCAAAGTAGGCAGGCA
GGGAGGCAGGCCGAGTGGGAGGGAGGGAGGGAGGGAAGGAGGAAGGGAGA
AGGAAACTGTGGAGGGTAGGATTGCTCCGTGCAAGTGTAGACAAAGGAAT
GCGAGGAAAAGAAGAGGAGGGAGTCACGTCCACACCCCACCCTTACGGAG
GACAGCTAGAGCACACTTCCTAGCTCCCTCACGACCGGTACTGAATCTCC
CTCCTCCTCTCCTTCCCTCCCTTCACCCGCCCTCTGCTTTTTTGCACGCC
AGGTGGAACCTGTGCTTCGCTACGCCCTGGTGGTTGGGGCGCCGTTGATG
ATTCTTGTGGGAGGGACCGTGGGCGCCTTGGCAGCAGCACTGCTGGCAGC
CAACCCCACCTATCAGGTAAGCGACAGAGGGCATGAAGGAGGGAGGTAGA
TAGACAGGAAGCAGACTCAGATCGCACTCATCCCCTCCATTTCTCCACCC
TCACTATAGGTGGGCTTGCTGTCTTTTGGCGCGGCGTCCCTGCTGTATCT
GATCACGGAGGAGCTGCTGGTGGAGGCGCACGAGGAGGGGGGCCCGCATG
TGTGGTACGTGGACCTAATGTTCTTTGTGGGCTTCATTGCCTCCGTCTTG
CTAGAGCAGAACATCCAGGACGCCAGTGGAGAGGGCGCTTAGAATAGAGA
AAGACGGGCTGACGGCTCGGTGGCTCAGTGAGGGGGATGGAGGAGGATTT
TCTTTTGTCGTGCATGGGTTTTCTTCTTTCTCTGCAAGCATAAGTGAGAG
AAGAGGATTCTGGCTAGGAAGGATGAAGAAGAAGCTCGAGATGGGCTTAT
GGAGGGATAGCAATGGGGAGGATGGGAGGGAGCGCGAGATGGACTTGAAA
AGGAATAACAGCGGAAACACGCTGGAGGAGGCTAATTGAATGAGGGGAAA
GACGCAGGGGATTCGAATACGAGAACAGGAAAATTGATGATGCTTATGGC
ACTTACAATCAGCGCACAAGCAAGCAAGAGTGAAGTGATATTATGGTCTC
GGCAAGTAAAGCGGTATTGATGAGCACCAGCAGCGAGGAGCAATAACAGC
GGTGGCAGCAGAAGGAAAGGAATTGTAATGTATTTTCTTTTCATCGATTC
GAGAGACTTCGATGGGGAAAGATGAAAGTAAAAATGAAACATTTGAGCAC
GTTAAAGAAAAAAGAGTGAGCCAAAAAGCAGCACTCCCATGCCGATGCGC
TTCTGCGTCCTCTTTTATTCTGTGCGTACGTCGGGTCCATCAACCTCTCG
AGGGACATCTTTCGCGATTCAGATCCATACAAGACAACAAACTAACACAG
CGGGTCCGTTTTCGCCTCAAATCCACACATGAAACAATTTCAAACAGCCC
GAATGCTTTTGCTCAAGCCCAGAAAACAGGATATGGGTGGCCCATTGGCC
CATTCATGCTCTTGGGGCCATAGTTCAGCGCCCATATCCGCATCAACCAT
TGGCACCCATCATCTCCAGCATTTCCATTGTCCTATTCATCCATCATGTC
CATTGCCGAGCTAATTTCTCCCTCGCAAGTGTGTTTTGTCGAAAAAAACC
TTTCCTAACCTCTCCTTGGCCAATAAAGAGATGGGGGGAAACTCGAACCT
TCAAGTGACGTGTACGAGCGGGCACCTCTTTTTGTCGGGTTTGGACTCAC
GCTCTTCTGCTTTAGGCATCGGAAGGCCTATAAGACCACAGCAACATTTC
CACATTTCCAGCAAAGTAACTGATTGAGGCCCAGATCCGGGCCATCTGTG
TAGACCTGTCCGGGAGCAAGAAAGACAATTCTGCAAAAGCTTTGACCGAC
TCCCTCCCCACCTGACGGGTTATAGTGGGCGATGTGGATCACACACGCAT
TCGACCGACCTACACCAAATTTCAAGAGACGGTAAAGGTTCAGCCATGAC
CCGCATCGATCTCACGAAAGGAATCATTGAATTCAATCATTAAAAAAGAG
ATTAATAAAGTTTAAAAGAAATTTG back to topCoding sequence (CDS) from alignment at chr19:820706..825280- >NO19G02700.2 ID=NO19G02700.2|Name=NO19G02700.2|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr19:820706..825280- (Nannochloropsis oceanica)
ATGGCTATTCACGAGTCGATCTTGCCCGCCTTCCTTCACACCATCGAGCT
ATGCCTGGGCCCGAGCGTGTTCATGCTCATCATGTCCTTTGCTATCTTCG
TCAAGGCGCCCAGCACCACCTTTGTGAATGCCATGCAACACTTTGGTGGC
GGCATCGTCCTCTCTGCCGTGGCCACGGAGCTTCTGCCTGCCATGAGCAA
GCAAAAGCACAGCTGGCAGAATACGGTGGCGACCCTCGTCGGGTTTTTCG
GTGGGGTGGCCATGATGGTTGGCGTCGCACACTTCTGCGGCGAGCCCGAA
GAGGAGGAGAACGAAAAAGAAGAAGAGGAAGAAGAGGAGGATGGTATGGA
GAAGAAGAGGGAGCATGCCGTCCGTGACGATCTCTTGCCGGTGATGCCCA
AGGCCAGCTCGCTCTCGGCTGGCAAGGTCCTCCCGCCCTCCCTCCCGCCC
TCCCTCCCGCCCTCCCCCCTCGTTGGGAGGAATGGAATGGTCCGTGCTCC
CACTTTGAGCCGACGCCGCAGTCTGATGGAGACGTACCGGCAAGCAGCCC
TCGCGAAAGCCTGCTCCCAGGGCGCTGCCTCCCCCTTGCTCATGCGCCGG
GCCGTTACCGTATCGAACCCCCGCACTGCCCGTGGTCCTTCCTCCTCTGT
TGCCGCACTTGATCTCTCCGTCTCTCCCCCCCCTCCTCCTCCTCGTCCCC
TCACCCCTCTAAGCGCATGGCCAAGAGCAAGACTGCCAACGTCGGCCGCA
CCATATTCGAAGAGCATATTCCCTCCTCCTCCCTCGTTCCCTCGTTCTCC
TCCTCCAACCTACCCACTGAACACACCTCTCTCCTCCTCTCCTCCTCCTC
CTCCTCCTCCACCGCTGCCCTGGAAAATGGCGAGCTCGATCGGAACCTCC
CCTTCATCCCCTCCTCCCCTTCGCCCTACGCTCCCCCTCCCTGGACACTG
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