NO19G02700.1, NO19G02700.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02700.1
Unique Name	NO19G02700.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3086
Alignment location	chr19:820706..824694 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:820706..824694 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO19G02700.1 vs.
Match: XP_005852381.1 (hypothetical protein NGA_0687000, partial [Nannochloropsis gaditana CCMP526]; EKU23504.1 hypothetical protein NGA_0687000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.9 bits (263), Expect = 2.300e-19
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 0

Query:    5 ESILPAFLHTIELCLGPSVFMLIMSFAIFVKAPSTTFVNAMQHFGGGIVLSAVATELLPAMSKQKHSWQN 75
            +SI  AF  T+ELC GPSVFM +MSFAIF+K PS TFVNAMQHFGGGIVLSAVATELLPAMS+ KH   N
Sbjct:    7 KSIFVAFWRTMELCSGPSVFMFLMSFAIFIKPPSVTFVNAMQHFGGGIVLSAVATELLPAMSRHKHRCVN 76

The following BLAST results are available for this feature:

BLAST of NO19G02700.1 vs.

BLAST of NO19G02700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005852381.1	2.300e-19	75.71	hypothetical protein NGA_0687000, partial [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02700	NO19G02700	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02700.1	NO19G02700.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02700.1.cds1	NO19G02700.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02700.1.cds2	NO19G02700.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02700.1.cds3	NO19G02700.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02700.1.cds4	NO19G02700.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:820706..824694-
coding sequence from alignment at chr19:820706..824694-

mRNA sequence

>NO19G02700.1 ID=NO19G02700.1|Name=NO19G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=3086bp
ATGGCTATTCACGAGTCGATCTTGCCCGCCTTCCTTCACACCATCGAGCT
ATGCCTGGGCCCGAGCGTGTTCATGCTCATCATGTCCTTTGCTATCTTCG
TCAAGGCGCCCAGCACCACCTTTGTGAATGCCATGCAACACTTTGGTGGC
GGCATCGTCCTCTCTGCCGTGGCCACGGAGCTTCTGCCTGCCATGAGCAA
GCAAAAGCACAGCTGGCAGAATACGGTGGCGACCCTCGTCGGGTTTTTCG
GTGGGGTGGCCATGATGGTTGGCGTCGCACACTTCTGCGGCGAGCCCGAA
GAGGAGGAGAACGAAAAAGAAGAAGAGGAAGAAGAGGAGGATGGTATGGA
GAAGAAGAGGGAGCATGCCGTCCGTGACGATCTCTTGCCGGTGATGCCCA
AGGCCAGCTCGCTCTCGGCTGGCAAGGTCCTCCCGCCCTCCCTCCCGCCC
TCCCTCCCGCCCTCCCCCCTCGTTGGGAGGAATGGAATGGTCCGTGCTCC
CACTTTGAGCCGACGCCGCAGTCTGATGGAGACGTACCGGCAAGCAGCCC
TCGCGAAAGCCTGCTCCCAGGGCGCTGCCTCCCCCTTGCTCATGCGCCGG
GCCGTTACCGTATCGAACCCCCGCACTGCCCGTGGTCCTTCCTCCTCTGT
TGCCGCACTTGATCTCTCCGTCTCTCCCCCCCCTCCTCCTCCTCGTCCCC
TCACCCCTCTAAGCGCATGGCCAAGAGCAAGACTGCCAACGTCGGCCGCA
CCATATTCGAAGAGCATATTCCCTCCTCCTCCCTCGTTCCCTCGTTCTCC
TCCTCCAACCTACCCACTGAACACACCTCTCTCCTCCTCTCCTCCTCCTC
CTCCTCCTCCACCGCTGCCCTGGAAAATGGCGAGCTCGATCGGAACCTCC
CCTTCATCCCCTCCTCCCCTTCGCCCTACGCTCCCCCTCCCTGGACACTG
ATCATCCCTGTCTATGTGGACTCGGTGATGGATGGCTTGCTCATCGGGCT
GGCTGCTGTGGCTGGCAAGAGCGCGGGCCTGATCATGTCCATCGCGCTGA
CCATAGAGATGGGCTTCCTTGGACTCACCTTCTCGGCGGGGGTCTCCAAA
GTAGGCAGGCAGGGAGGCAGGCCGAGTGGGAGGGAGGGAGGGAGGGAAGG
AGGAAGGGAGAAGGAAACTGTGGAGGGTAGGATTGCTCCGTGCAAGTGTA
GACAAAGGAATGCGAGGAAAAGAAGAGGAGGGAGTCACGTCCACACCCCA
CCCTTACGGAGGACAGCTAGAGCACACTTCCTAGCTCCCTCACGACCGGT
ACTGAATCTCCCTCCTCCTCTCCTTCCCTCCCTTCACCCGCCCTCTGCTT
TTTTGCACGCCAGGTGGAACCTGTGCTTCGCTACGCCCTGGTGGTTGGGG
CGCCGTTGATGATTCTTGTGGGAGGGACCGTGGGCGCCTTGGCAGCAGCA
CTGCTGGCAGCCAACCCCACCTATCAGGTAAGCGACAGAGGGCATGAAGG
AGGGAGGTAGATAGACAGGAAGCAGACTCAGATCGCACTCATCCCCTCCA
TTTCTCCACCCTCACTATAGGTGGGCTTGCTGTCTTTTGGCGCGGCGTCC
CTGCTGTATCTGATCACGGAGGAGCTGCTGGTGGAGGCGCACGAGGAGGG
GGGCCCGCATGTGTGGTACGTGGACCTAATGTTCTTTGTGGGCTTCATTG
CCTCCGTCTTGCTAGAGCAGAACATCCAGGACGCCAGTGGAGAGGGCGCT
TAGAATAGAGAAAGACGGGCTGACGGCTCGGTGGCTCAGTGAGGGGGATG
GAGGAGGATTTTCTTTTGTCGTGCATGGGTTTTCTTCTTTCTCTGCAAGC
ATAAGTGAGAGAAGAGGATTCTGGCTAGGAAGGATGAAGAAGAAGCTCGA
GATGGGCTTATGGAGGGATAGCAATGGGGAGGATGGGAGGGAGCGCGAGA
TGGACTTGAAAAGGAATAACAGCGGAAACACGCTGGAGGAGGCTAATTGA
ATGAGGGGAAAGACGCAGGGGATTCGAATACGAGAACAGGAAAATTGATG
ATGCTTATGGCACTTACAATCAGCGCACAAGCAAGCAAGAGTGAAGTGAT
ATTATGGTCTCGGCAAGTAAAGCGGTATTGATGAGCACCAGCAGCGAGGA
GCAATAACAGCGGTGGCAGCAGAAGGAAAGGAATTGTAATGTATTTTCTT
TTCATCGATTCGAGAGACTTCGATGGGGAAAGATGAAAGTAAAAATGAAA
CATTTGAGCACGTTAAAGAAAAAAGAGTGAGCCAAAAAGCAGCACTCCCA
TGCCGATGCGCTTCTGCGTCCTCTTTTATTCTGTGCGTACGTCGGGTCCA
TCAACCTCTCGAGGGACATCTTTCGCGATTCAGATCCATACAAGACAACA
AACTAACACAGCGGGTCCGTTTTCGCCTCAAATCCACACATGAAACAATT
TCAAACAGCCCGAATGCTTTTGCTCAAGCCCAGAAAACAGGATATGGGTG
GCCCATTGGCCCATTCATGCTCTTGGGGCCATAGTTCAGCGCCCATATCC
GCATCAACCATTGGCACCCATCATCTCCAGCATTTCCATTGTCCTATTCA
TCCATCATGTCCATTGCCGAGCTAATTTCTCCCTCGCAAGTGTGTTTTGT
CGAAAAAAACCTTTCCTAACCTCTCCTTGGCCAATAAAGAGATGGGGGGA
AACTCGAACCTTCAAGTGACGTGTACGAGCGGGCACCTCTTTTTGTCGGG
TTTGGACTCACGCTCTTCTGCTTTAGGCATCGGAAGGCCTATAAGACCAC
AGCAACATTTCCACATTTCCAGCAAAGTAACTGATTGAGGCCCAGATCCG
GGCCATCTGTGTAGACCTGTCCGGGAGCAAGAAAGACAATTCTGCAAAAG
CTTTGACCGACTCCCTCCCCACCTGACGGGTTATAGTGGGCGATGTGGAT
CACACACGCATTCGACCGACCTACACCAAATTTCAAGAGACGGTAAAGGT
TCAGCCATGACCCGCATCGATCTCACGAAAGGAATCATTGAATTCAATCA
TTAAAAAAGAGATTAATAAAGTTTAAAAGAAATTTG

protein sequence of NO19G02700.1

>NO19G02700.1-protein ID=NO19G02700.1-protein|Name=NO19G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAIHESILPAFLHTIELCLGPSVFMLIMSFAIFVKAPSTTFVNAMQHFGG
GIVLSAVATELLPAMSKQKHSWQNTVATLVGFFGGVAMMVGVAHFCGEPE
EEENEKEEEEEEEDGMEKKREHAVRDDLLPVMPKASSLSAGKVLPPSLPP
SLPPSPLVGRNGMVRAPTLSRRRSLMETYRQAALAKACSQGAASPLLMRR
AVTVSNPRTARGPSSSVAALDLSVSPPPPPPRPLTPLSAWPRARLPTSAA
PYSKSIFPPPPSFPRSPPPTYPLNTPLSSSPPPPPPPPLPWKMASSIGTS
PSSPPPLRPTLPLPGH*

mRNA from alignment at chr19:820706..824694-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02700.1 ID=NO19G02700.1|Name=NO19G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=3989bp|location=Sequence derived from alignment at chr19:820706..824694- (Nannochloropsis oceanica)
ATGGCTATTCACGAGTCGATCTTGCCCGCCTTCCTTCACACCATCGAGCT
ATGCCTGGGCCCGAGCGTGTTCATGCTCATCATGTCCTTTGCTATCTTCG
TCAAGGCGCCCAGCACCACCTTTGTGAATGCCATGCAACACTTTGGTACG
TGAAAAGCTAAGGGAGGAGGGGAGGCCGATTGAAGGTTAGAGAGAGGGTG
ACTGTGGCGGATGACAGGGAATTGGCCAACATATCTTGCATGATTCCTTG
AAGTGTATGACTCTATCGTCTTTTTTAGGTCTGACAGGTGCTATTCTTGT
GAGTGTGCAACATGGTTATTGATTGCATAGATTTATCCTCCCCTAGCATG
TTAACCCACTTCCCTCTTCCTACTTTCCTACTTTCTACTCCCTCACACAG
GTGGCGGCATCGTCCTCTCTGCCGTGGCCACGGAGCTTCTGCCTGCCATG
AGCAAGCAAAAGCACAGGTAGCTGTGGAGAAAGAAGAAATGGAGGGTGGG
TGGACTTTCGCTGGGGATAGAATGGAGGATGCGCGGGTGCAGCAGGCGCA
CAAGCTCTTCACCTGAGACGCAAGGAAACGAGAGAGACTCTCAGCTGTCT
TTTCTTTTTTCTTCATTCCGACTTTACCTCTCACCTATCCGTCTCATCCT
CTCTCCTCCTTCCATTCCCCCTCTGCCCTGGCAGCTGGCAGAATACGGTG
GCGACCCTCGTCGGGTTTTTCGGTGGGGTGGCCATGATGGTTGGCGTCGC
ACACTTCTGCGGCGAGCCCGAAGAGGAGGAGAACGAAAAAGAAGAAGAGG
AAGAAGAGGAGGATGGTATGGAGAAGAAGAGGGAGCATGCCGTCCGTGAC
GATCTCTTGCCGGTGATGCCCAAGGCCAGCTCGCTCTCGGCTGGCAAGGT
CCTCCCGCCCTCCCTCCCGCCCTCCCTCCCGCCCTCCCCCCTCGTTGGGA
GGAATGGAATGGTCCGTGCTCCCACTTTGAGCCGACGCCGCAGTCTGATG
GAGACGTACCGGGTGCGTACGGTGGGAGGAGAGGGGGGAGGGAGGGAGGG
AGGGAAAAGGAGGCGTGGAGTGGATGTTGATATTTATGTATGTAAAAGAA
TATTGTGTAATATTGAGAGGAATGTCGTTTATATCGTCAGGCTAGCGACG
AAGATCGGAACGGATGAAGACGCCTGAAAGATGACGCTGCCATCCGTGCA
TCCATTCATCCATCCATCCACCCGTCCTTCCCTCCCTCCCGTCATTTCTT
CCTCCATTCCGTCATCACAGCAAGCAGCCCTCGCGAAAGCCTGCTCCCAG
GGCGCTGCCTCCCCCTTGCTCATGCGCCGGGCCGTTACCGTATCGAACCC
CCGCACTGCCCGTGGTCCTTCCTCCTCTGTTGCCGCACTTGATCTCTCCG
TCTCTCCCCCCCCTCCTCCTCCTCGTCCCCTCACCCCTCTAAGCGCATGG
CCAAGAGCAAGACTGCCAACGTCGGCCGCACCATATTCGAAGAGCATATT
CCCTCCTCCTCCCTCGTTCCCTCGTTCTCCTCCTCCAACCTACCCACTGA
ACACACCTCTCTCCTCCTCTCCTCCTCCTCCTCCTCCTCCACCGCTGCCC
TGGAAAATGGCGAGCTCGATCGGAACCTCCCCTTCATCCCCTCCTCCCCT
TCGCCCTACGCTCCCCCTCCCTGGACACTGATCATCCCTGTCTATGTGGA
CTCGGTGATGGATGGCTTGCTCATCGGGCTGGCTGCTGTGGCTGGTAGGA
GGGAGGACGGGGGAGGGGAAGGGAGGGAGGAAAGGGAGGGAGGGAGACGA
GTGGTTCTTGGTTGATCTGACCTTCCCTTGCCTTGTTTCCTGGTCCTCCT
GTACCGCCCTCTTCATCCTTCGTTTCATTTCCTCCCTCCTTTTCTCCCTC
TCTCCCTCGATTCATAGGCAAGAGCGCGGGCCTGATCATGTCCATCGCGC
TGACCATAGAGATGGGCTTCCTTGGACTCACCTTCTCGGCGGGGGTCTCC
AAAGTAGGCAGGCAGGGAGGCAGGCCGAGTGGGAGGGAGGGAGGGAGGGA
AGGAGGAAGGGAGAAGGAAACTGTGGAGGGTAGGATTGCTCCGTGCAAGT
GTAGACAAAGGAATGCGAGGAAAAGAAGAGGAGGGAGTCACGTCCACACC
CCACCCTTACGGAGGACAGCTAGAGCACACTTCCTAGCTCCCTCACGACC
GGTACTGAATCTCCCTCCTCCTCTCCTTCCCTCCCTTCACCCGCCCTCTG
CTTTTTTGCACGCCAGGTGGAACCTGTGCTTCGCTACGCCCTGGTGGTTG
GGGCGCCGTTGATGATTCTTGTGGGAGGGACCGTGGGCGCCTTGGCAGCA
GCACTGCTGGCAGCCAACCCCACCTATCAGGTAAGCGACAGAGGGCATGA
AGGAGGGAGGTAGATAGACAGGAAGCAGACTCAGATCGCACTCATCCCCT
CCATTTCTCCACCCTCACTATAGGTGGGCTTGCTGTCTTTTGGCGCGGCG
TCCCTGCTGTATCTGATCACGGAGGAGCTGCTGGTGGAGGCGCACGAGGA
GGGGGGCCCGCATGTGTGGTACGTGGACCTAATGTTCTTTGTGGGCTTCA
TTGCCTCCGTCTTGCTAGAGCAGAACATCCAGGACGCCAGTGGAGAGGGC
GCTTAGAATAGAGAAAGACGGGCTGACGGCTCGGTGGCTCAGTGAGGGGG
ATGGAGGAGGATTTTCTTTTGTCGTGCATGGGTTTTCTTCTTTCTCTGCA
AGCATAAGTGAGAGAAGAGGATTCTGGCTAGGAAGGATGAAGAAGAAGCT
CGAGATGGGCTTATGGAGGGATAGCAATGGGGAGGATGGGAGGGAGCGCG
AGATGGACTTGAAAAGGAATAACAGCGGAAACACGCTGGAGGAGGCTAAT
TGAATGAGGGGAAAGACGCAGGGGATTCGAATACGAGAACAGGAAAATTG
ATGATGCTTATGGCACTTACAATCAGCGCACAAGCAAGCAAGAGTGAAGT
GATATTATGGTCTCGGCAAGTAAAGCGGTATTGATGAGCACCAGCAGCGA
GGAGCAATAACAGCGGTGGCAGCAGAAGGAAAGGAATTGTAATGTATTTT
CTTTTCATCGATTCGAGAGACTTCGATGGGGAAAGATGAAAGTAAAAATG
AAACATTTGAGCACGTTAAAGAAAAAAGAGTGAGCCAAAAAGCAGCACTC
CCATGCCGATGCGCTTCTGCGTCCTCTTTTATTCTGTGCGTACGTCGGGT
CCATCAACCTCTCGAGGGACATCTTTCGCGATTCAGATCCATACAAGACA
ACAAACTAACACAGCGGGTCCGTTTTCGCCTCAAATCCACACATGAAACA
ATTTCAAACAGCCCGAATGCTTTTGCTCAAGCCCAGAAAACAGGATATGG
GTGGCCCATTGGCCCATTCATGCTCTTGGGGCCATAGTTCAGCGCCCATA
TCCGCATCAACCATTGGCACCCATCATCTCCAGCATTTCCATTGTCCTAT
TCATCCATCATGTCCATTGCCGAGCTAATTTCTCCCTCGCAAGTGTGTTT
TGTCGAAAAAAACCTTTCCTAACCTCTCCTTGGCCAATAAAGAGATGGGG
GGAAACTCGAACCTTCAAGTGACGTGTACGAGCGGGCACCTCTTTTTGTC
GGGTTTGGACTCACGCTCTTCTGCTTTAGGCATCGGAAGGCCTATAAGAC
CACAGCAACATTTCCACATTTCCAGCAAAGTAACTGATTGAGGCCCAGAT
CCGGGCCATCTGTGTAGACCTGTCCGGGAGCAAGAAAGACAATTCTGCAA
AAGCTTTGACCGACTCCCTCCCCACCTGACGGGTTATAGTGGGCGATGTG
GATCACACACGCATTCGACCGACCTACACCAAATTTCAAGAGACGGTAAA
GGTTCAGCCATGACCCGCATCGATCTCACGAAAGGAATCATTGAATTCAA
TCATTAAAAAAGAGATTAATAAAGTTTAAAAGAAATTTG

Coding sequence (CDS) from alignment at chr19:820706..824694-

>NO19G02700.1 ID=NO19G02700.1|Name=NO19G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr19:820706..824694- (Nannochloropsis oceanica)
ATGGCTATTCACGAGTCGATCTTGCCCGCCTTCCTTCACACCATCGAGCT
ATGCCTGGGCCCGAGCGTGTTCATGCTCATCATGTCCTTTGCTATCTTCG
TCAAGGCGCCCAGCACCACCTTTGTGAATGCCATGCAACACTTTGGTGGC
GGCATCGTCCTCTCTGCCGTGGCCACGGAGCTTCTGCCTGCCATGAGCAA
GCAAAAGCACAGCTGGCAGAATACGGTGGCGACCCTCGTCGGGTTTTTCG
GTGGGGTGGCCATGATGGTTGGCGTCGCACACTTCTGCGGCGAGCCCGAA
GAGGAGGAGAACGAAAAAGAAGAAGAGGAAGAAGAGGAGGATGGTATGGA
GAAGAAGAGGGAGCATGCCGTCCGTGACGATCTCTTGCCGGTGATGCCCA
AGGCCAGCTCGCTCTCGGCTGGCAAGGTCCTCCCGCCCTCCCTCCCGCCC
TCCCTCCCGCCCTCCCCCCTCGTTGGGAGGAATGGAATGGTCCGTGCTCC
CACTTTGAGCCGACGCCGCAGTCTGATGGAGACGTACCGGCAAGCAGCCC
TCGCGAAAGCCTGCTCCCAGGGCGCTGCCTCCCCCTTGCTCATGCGCCGG
GCCGTTACCGTATCGAACCCCCGCACTGCCCGTGGTCCTTCCTCCTCTGT
TGCCGCACTTGATCTCTCCGTCTCTCCCCCCCCTCCTCCTCCTCGTCCCC
TCACCCCTCTAAGCGCATGGCCAAGAGCAAGACTGCCAACGTCGGCCGCA
CCATATTCGAAGAGCATATTCCCTCCTCCTCCCTCGTTCCCTCGTTCTCC
TCCTCCAACCTACCCACTGAACACACCTCTCTCCTCCTCTCCTCCTCCTC
CTCCTCCTCCACCGCTGCCCTGGAAAATGGCGAGCTCGATCGGAACCTCC
CCTTCATCCCCTCCTCCCCTTCGCCCTACGCTCCCCCTCCCTGGACACTG
A

Synonyms

Publications