NO19G01110, NO19G01110 (gene) Nannochloropsis oceanica

Overview
NameNO19G01110
Unique NameNO19G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2581
Alignment locationchr19:365324..368332 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:365324..368332 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0000062fatty-acyl-CoA binding
Homology
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BLAST of NO19G01110 vs. NCBI_GenBank
Match: EWM29419.1 (rho gtpase-activating protein 25 [Nannochloropsis gaditana])

HSP 1 Score: 81.3 bits (199), Expect = 9.100e-12
Identity = 45/122 (36.89%), Postives = 62/122 (50.82%), Query Frame = 0 
Query:    1 MLMGIIDNTIGAEIDRQYDYGHRVRVLNHHNWIDYLKYKGVAIVAPRDMYLYVHWRVLEQEEAKEEGRDEGMEGRVCGPAIVVVVFSDPPPSLLPSLATPRPLHHGCVRAECITAGWVLRPV 123
            +L+ I+D ++    D  + +G R+++ N H W+DY  Y+ V   + RDMY  VHW+VLE         D+G         IVVV   D             P   GCVRAEC+ AGWV+RPV
Sbjct:  387 VLLTIMDLSLRQAYDAHFGFGRRMKIYNAHTWLDYHHYQAVWPTSARDMYNVVHWQVLE---------DDG--------TIVVVAVGD---------EDRHPEEAGCVRAECLLAGWVIRPV 482
The following BLAST results are available for this feature:
BLAST of NO19G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29419.19.100e-1236.89rho gtpase-activating protein 25 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004445NSK004445Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01110.1NO19G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G01110.2NO19G01110.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632296gene_7505Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101085g1gene6841Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01110.1NO19G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G01110.2NO19G01110.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01110 ID=NO19G01110|Name=NO19G01110|organism=Nannochloropsis oceanica|type=gene|length=2581bp
CAGGCATATCCCAAGCACAAAAGGTATGTCGTCCAGCACCACCCCTCCCT
CCTTCTCCTCCTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCTCAAAT
CACCACCACCAGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCCTCCTC
AATTTCCTCCCCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCTCTACA
AACGCAAAGACCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTCTAACC
CACCACGAAGATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCCCCTTC
AACAGCCCCTCCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGCACGAG
TGATGGATCGGGACGAAGTGAGAGGCTCTGATAGAAAATACCCTTTTGAA
TTGAGGCATGCATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGGAGTGA
GGAGGAGAGGAGGAATTGGGTGGAAGGGTTAAGGAGGCTAAGGAAGGAAG
CGCAGGCAGCGATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAGGGAGA
AGGAGGACGGATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGGGAGGA
GGAGGAAGCGGATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGTGTGGC
CAGGGTATGAGGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGGAGTTC
GCCGAGGTGCGTGATTCAAACTGTCAATCACCCATTCATCTGTCCACCAA
TCGATCTTTTGAATTATAGACTAATTACTCCTCATTTCGCGTATTCATAC
TTATCCTACTATTTCATCCTATCCCTCCCTCCCCTTCAGCCCTCCAACGG
CTGGAAGCTGCAATTCACCAAGCATGGAGTCAGTGCGTACCGGAGGGAAG
TGCCAAACACAAACGACTCCTTTACGACCCTCAAGGGCCAGGGGGTGGTG
CCGCATCATCCAGTGGCGATGCTGATGGGTATAATTGATAACACCATTGG
AGCCGgtacgtgtatattattaattgttttttggtgtatttatttatttg
tatatttaattgtatttgtttatttatttatccatttatccatctattca
tctattaattcatctatttatggatttatgaattcgcgtattcatagatt
tatgcatttaatgtatatcttacacaattgtaataatccctgccaacagA
GATCGACCGTCAGTACGACTACGGCCACCGGGTTCGCGTCTTGAACCACC
ACAACTGGATCGACTACCTCAAGTATAAAGGCGTGGCTATTGTCGCCCCC
CGGGACATGTACTTGTATGTGCACTGGCGGGTACTGGAGCAGGAGGAGGC
GAAGGAAGAGGGGAGGGATGAGGGGATGGAGGGCAGGGTCTGTGGGCCAG
CAATAGTCGTCGTTGTTTTTTCCGACCCCCCTCCTTCCCTCCTTCCCTCC
CTCGCTACCCCTCGTCCCCTTCACCATGGTTGTGTACGCGCCGAGTGCAT
TACAGCTGGGTGGGTCCTACGTCCTGTTCTTGTCCACGAAAAAAAGGAAA
AGGAAGGGGAGGGAGGGAGGGAAGGAGGGCAAGGAGGGCAAGGAGGCCTG
CACACACATCATCTTCACAAGCACCATCACAAGCACCAGCACCATCACCA
TCACCATCACCATCACCACCACCATCACAATCATGCCCCCAAAAGGAAGC
ATCAGGTCGGAGACATTGACAAGGAGGAAGAGAAAGATGAGGTAAAAATA
CACACGAAATGTACCTATTTCTCTATGGCGGATCTGAAGGGTTATATCCC
TAAGAGGCTGGTGGACTTCGCCACTGAGCCCCAACCCCTCATGATCCACG
CCATCTCCACCGTCATCACGGCGGAAAACAAACGGAGCGATAAATTTGCG
GTGGATGCGCGGATAGGTGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGCTTGAATTGGAGGGGGAGGGATGTATGGCCGTATGTGAAGCGGATTC
ATCGAATCAATTTGCCCGAGGAGGAGAGAAGGAAATATGGGTGGTTGAGG
ACGAAGGAGGAAGAGGAGGAAGAAGAGAAACAAAAGGAGGGACGTAAGGA
TCATTGGTCTGAGGGTACACGACGGCGACGGAGAGGGTCGGCGGGAGGAG
GTGGAGGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGGGGAGGACACTCC
TTTTCGCCGTCGTCTTCGCCGTTGCACAGGCAAAGAGGCACCTTGTCTTC
CTCTCTTCGTTCCTCCTCCTCGTCTTCTCTTTCCCCCTCCCTAAAAGGCT
CTCTCCGACGTGCCCTTCTTGTCTTTCTGCTCGTTTTTCTTGCTTGTCTC
TTTGGTCATCTCCACATGCAGCAGCAGGGGAAGGAGGGAGGGGAGGAAGG
AGGCGTGTGGGGGAGAGGGAGGGATAGGCTGCTGGAGGGATGGCGTTGGT
TTTGGCTGTGTGCGTATGGTTTGATGCACCGCTTATTGGGAGGAGGAGGA
GGAGGGGGGGACGGGCTGAGGGGGAAGGAGAAGAGGTGGGGAAGAGGTTG
GGGTTGGACGCGGAATGGAATGGAGACGTGA
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protein sequence of NO19G01110.1

>NO19G01110.1-protein ID=NO19G01110.1-protein|Name=NO19G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MLMGIIDNTIGAEIDRQYDYGHRVRVLNHHNWIDYLKYKGVAIVAPRDMY
LYVHWRVLEQEEAKEEGRDEGMEGRVCGPAIVVVVFSDPPPSLLPSLATP
RPLHHGCVRAECITAGWVLRPVLVHEKKEKEGEGGREGGQGGQGGLHTHH
LHKHHHKHQHHHHHHHHHHHHHNHAPKRKHQVGDIDKEEEKDEVKIHTKC
TYFSMADLKGYIPKRLVDFATEPQPLMIHAISTVITAENKRSDKFAVDAR
IGGREGGREGGREGLNWRGRDVWPYVKRIHRINLPEEERRKYGWLRTKEE
EEEEEKQKEGRKDHWSEGTRRRRRGSAGGGGGGGGGGGGGGGGGHSFSPS
SSPLHRQRGTLSSSLRSSSSSSLSPSLKGSLRRALLVFLLVFLACLFGHL
HMQQQGKEGGEEGGVWGRGRDRLLEGWRWFWLCAYGLMHRLLGGGGGGGD
GLRGKEKRWGRGWGWTRNGMET*
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protein sequence of NO19G01110.2

>NO19G01110.2-protein ID=NO19G01110.2-protein|Name=NO19G01110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=743bp
MSSSTTPPSFSSSSPSCSSSCRPSNHHHQHLPRKSLSSSASSISSPSHQP
FRLSGTLYKRKDHLTWKWRPRLFLTHHEDFLLFYYLPSTSPSTAPPRGVV
PLAGCEARVMDRDEVRGSDRKYPFELRHAWLDKPWVLAARSEEERRNWVE
GLRRLRKEAQAAMRESVWGEMEGGRRRTDEGQEEEELEEGEEEEADEGED
GHLGRLVWPGYEEEVGTAMKRVLEFAEPSNGWKLQFTKHGVSAYRREVPN
TNDSFTTLKGQGVVPHHPVAMLMGIIDNTIGAEIDRQYDYGHRVRVLNHH
NWIDYLKYKGVAIVAPRDMYLYVHWRVLEQEEAKEEGRDEGMEGRVCGPA
IVVVVFSDPPPSLLPSLATPRPLHHGCVRAECITAGWVLRPVLVHEKKEK
EGEGGREGGQGGQGGLHTHHLHKHHHKHQHHHHHHHHHHHHHNHAPKRKH
QVGDIDKEEEKDEVKIHTKCTYFSMADLKGYIPKRLVDFATEPQPLMIHA
ISTVITAENKRSDKFAVDARIGGREGGREGGREGLNWRGRDVWPYVKRIH
RINLPEEERRKYGWLRTKEEEEEEEKQKEGRKDHWSEGTRRRRRGSAGGG
GGGGGGGGGGGGGGHSFSPSSSPLHRQRGTLSSSLRSSSSSSLSPSLKGS
LRRALLVFLLVFLACLFGHLHMQQQGKEGGEEGGVWGRGRDRLLEGWRWF
WLCAYGLMHRLLGGGGGGGDGLRGKEKRWGRGWGWTRNGMET*
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Synonyms
Publications