NO19G01110.1, NO19G01110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01110.1
Unique NameNO19G01110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2387
Alignment locationchr19:365324..367904 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:365324..367904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01110NO19G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01110.1NO19G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01110.1.cds1NO19G01110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01110.1.cds2NO19G01110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01110.1 ID=NO19G01110.1|Name=NO19G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2387bp
CAGGCATATCCCAAGCACAAAAGGTATGTCGTCCAGCACCACCCCTCCCT
CCTTCTCCTCCTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCTCAAAT
CACCACCACCAGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCCTCCTC
AATTTCCTCCCCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCTCTACA
AACGCAAAGACCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTCTAACC
CACCACGAAGATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCCCCTTC
AACAGCCCCTCCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGCACGAG
TGATGGATCGGGACGAAGTGAGAGGCTCTGATAGAAAATACCCTTTTGAA
TTGAGGCATGCATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGGAGTGA
GGAGGAGAGGAGGAATTGGGTGGAAGGGTTAAGGAGGCTAAGGAAGGAAG
CGCAGGCAGCGATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAGGGAGA
AGGAGGACGGATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGGGAGGA
GGAGGAAGCGGATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGTGTGGC
CAGGGTATGAGGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGGAGTTC
GCCGAGGTGCGTGATTCAAACTGTCAATCACCCATTCATCTGTCCACCAA
TCGATCTTTTGAATTATAGACTAATTACTCCTCATTTCGCGTATTCATAC
TTATCCTACTATTTCATCCTATCCCTCCCTCCCCTTCAGCCCTCCAACGG
CTGGAAGCTGCAATTCACCAAGCATGGAGTCAGTGCGTACCGGAGGGAAG
TGCCAAACACAAACGACTCCTTTACGACCCTCAAGGGCCAGGGGGTGGTG
CCGCATCATCCAGTGGCGATGCTGATGGGTATAATTGATAACACCATTGG
AGCCGAGATCGACCGTCAGTACGACTACGGCCACCGGGTTCGCGTCTTGA
ACCACCACAACTGGATCGACTACCTCAAGTATAAAGGCGTGGCTATTGTC
GCCCCCCGGGACATGTACTTGTATGTGCACTGGCGGGTACTGGAGCAGGA
GGAGGCGAAGGAAGAGGGGAGGGATGAGGGGATGGAGGGCAGGGTCTGTG
GGCCAGCAATAGTCGTCGTTGTTTTTTCCGACCCCCCTCCTTCCCTCCTT
CCCTCCCTCGCTACCCCTCGTCCCCTTCACCATGGTTGTGTACGCGCCGA
GTGCATTACAGCTGGGTGGGTCCTACGTCCTGTTCTTGTCCACGAAAAAA
AGGAAAAGGAAGGGGAGGGAGGGAGGGAAGGAGGGCAAGGAGGGCAAGGA
GGCCTGCACACACATCATCTTCACAAGCACCATCACAAGCACCAGCACCA
TCACCATCACCATCACCATCACCACCACCATCACAATCATGCCCCCAAAA
GGAAGCATCAGGTCGGAGACATTGACAAGGAGGAAGAGAAAGATGAGGTA
AAAATACACACGAAATGTACCTATTTCTCTATGGCGGATCTGAAGGGTTA
TATCCCTAAGAGGCTGGTGGACTTCGCCACTGAGCCCCAACCCCTCATGA
TCCACGCCATCTCCACCGTCATCACGGCGGAAAACAAACGGAGCGATAAA
TTTGCGGTGGATGCGCGGATAGGTGGGCGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGCTTGAATTGGAGGGGGAGGGATGTATGGCCGTATGTGAAGC
GGATTCATCGAATCAATTTGCCCGAGGAGGAGAGAAGGAAATATGGGTGG
TTGAGGACGAAGGAGGAAGAGGAGGAAGAAGAGAAACAAAAGGAGGGACG
TAAGGATCATTGGTCTGAGGGTACACGACGGCGACGGAGAGGGTCGGCGG
GAGGAGGTGGAGGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGGGGAGGA
CACTCCTTTTCGCCGTCGTCTTCGCCGTTGCACAGGCAAAGAGGCACCTT
GTCTTCCTCTCTTCGTTCCTCCTCCTCGTCTTCTCTTTCCCCCTCCCTAA
AAGGCTCTCTCCGACGTGCCCTTCTTGTCTTTCTGCTCGTTTTTCTTGCT
TGTCTCTTTGGTCATCTCCACATGCAGCAGCAGGGGAAGGAGGGAGGGGA
GGAAGGAGGCGTGTGGGGGAGAGGGAGGGATAGGCTGCTGGAGGGATGGC
GTTGGTTTTGGCTGTGTGCGTATGGTTTGATGCACCGCTTATTGGGAGGA
GGAGGAGGAGGGGGGGACGGGCTGAGGGGGAAGGAGAAGAGGTGGGGAAG
AGGTTGGGGTTGGACGCGGAATGGAATGGAGACGTGA
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protein sequence of NO19G01110.1

>NO19G01110.1-protein ID=NO19G01110.1-protein|Name=NO19G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MLMGIIDNTIGAEIDRQYDYGHRVRVLNHHNWIDYLKYKGVAIVAPRDMY
LYVHWRVLEQEEAKEEGRDEGMEGRVCGPAIVVVVFSDPPPSLLPSLATP
RPLHHGCVRAECITAGWVLRPVLVHEKKEKEGEGGREGGQGGQGGLHTHH
LHKHHHKHQHHHHHHHHHHHHHNHAPKRKHQVGDIDKEEEKDEVKIHTKC
TYFSMADLKGYIPKRLVDFATEPQPLMIHAISTVITAENKRSDKFAVDAR
IGGREGGREGGREGLNWRGRDVWPYVKRIHRINLPEEERRKYGWLRTKEE
EEEEEKQKEGRKDHWSEGTRRRRRGSAGGGGGGGGGGGGGGGGGHSFSPS
SSPLHRQRGTLSSSLRSSSSSSLSPSLKGSLRRALLVFLLVFLACLFGHL
HMQQQGKEGGEEGGVWGRGRDRLLEGWRWFWLCAYGLMHRLLGGGGGGGD
GLRGKEKRWGRGWGWTRNGMET*
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mRNA from alignment at chr19:365324..367904+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01110.1 ID=NO19G01110.1|Name=NO19G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2581bp|location=Sequence derived from alignment at chr19:365324..367904+ (Nannochloropsis oceanica)
CAGGCATATCCCAAGCACAAAAGGTATGTCGTCCAGCACCACCCCTCCCT
CCTTCTCCTCCTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCTCAAAT
CACCACCACCAGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCCTCCTC
AATTTCCTCCCCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCTCTACA
AACGCAAAGACCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTCTAACC
CACCACGAAGATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCCCCTTC
AACAGCCCCTCCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGCACGAG
TGATGGATCGGGACGAAGTGAGAGGCTCTGATAGAAAATACCCTTTTGAA
TTGAGGCATGCATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGGAGTGA
GGAGGAGAGGAGGAATTGGGTGGAAGGGTTAAGGAGGCTAAGGAAGGAAG
CGCAGGCAGCGATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAGGGAGA
AGGAGGACGGATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGGGAGGA
GGAGGAAGCGGATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGTGTGGC
CAGGGTATGAGGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGGAGTTC
GCCGAGGTGCGTGATTCAAACTGTCAATCACCCATTCATCTGTCCACCAA
TCGATCTTTTGAATTATAGACTAATTACTCCTCATTTCGCGTATTCATAC
TTATCCTACTATTTCATCCTATCCCTCCCTCCCCTTCAGCCCTCCAACGG
CTGGAAGCTGCAATTCACCAAGCATGGAGTCAGTGCGTACCGGAGGGAAG
TGCCAAACACAAACGACTCCTTTACGACCCTCAAGGGCCAGGGGGTGGTG
CCGCATCATCCAGTGGCGATGCTGATGGGTATAATTGATAACACCATTGG
AGCCGGTACGTGTATATTATTAATTGTTTTTTGGTGTATTTATTTATTTG
TATATTTAATTGTATTTGTTTATTTATTTATCCATTTATCCATCTATTCA
TCTATTAATTCATCTATTTATGGATTTATGAATTCGCGTATTCATAGATT
TATGCATTTAATGTATATCTTACACAATTGTAATAATCCCTGCCAACAGA
GATCGACCGTCAGTACGACTACGGCCACCGGGTTCGCGTCTTGAACCACC
ACAACTGGATCGACTACCTCAAGTATAAAGGCGTGGCTATTGTCGCCCCC
CGGGACATGTACTTGTATGTGCACTGGCGGGTACTGGAGCAGGAGGAGGC
GAAGGAAGAGGGGAGGGATGAGGGGATGGAGGGCAGGGTCTGTGGGCCAG
CAATAGTCGTCGTTGTTTTTTCCGACCCCCCTCCTTCCCTCCTTCCCTCC
CTCGCTACCCCTCGTCCCCTTCACCATGGTTGTGTACGCGCCGAGTGCAT
TACAGCTGGGTGGGTCCTACGTCCTGTTCTTGTCCACGAAAAAAAGGAAA
AGGAAGGGGAGGGAGGGAGGGAAGGAGGGCAAGGAGGGCAAGGAGGCCTG
CACACACATCATCTTCACAAGCACCATCACAAGCACCAGCACCATCACCA
TCACCATCACCATCACCACCACCATCACAATCATGCCCCCAAAAGGAAGC
ATCAGGTCGGAGACATTGACAAGGAGGAAGAGAAAGATGAGGTAAAAATA
CACACGAAATGTACCTATTTCTCTATGGCGGATCTGAAGGGTTATATCCC
TAAGAGGCTGGTGGACTTCGCCACTGAGCCCCAACCCCTCATGATCCACG
CCATCTCCACCGTCATCACGGCGGAAAACAAACGGAGCGATAAATTTGCG
GTGGATGCGCGGATAGGTGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGCTTGAATTGGAGGGGGAGGGATGTATGGCCGTATGTGAAGCGGATTC
ATCGAATCAATTTGCCCGAGGAGGAGAGAAGGAAATATGGGTGGTTGAGG
ACGAAGGAGGAAGAGGAGGAAGAAGAGAAACAAAAGGAGGGACGTAAGGA
TCATTGGTCTGAGGGTACACGACGGCGACGGAGAGGGTCGGCGGGAGGAG
GTGGAGGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGGGGAGGACACTCC
TTTTCGCCGTCGTCTTCGCCGTTGCACAGGCAAAGAGGCACCTTGTCTTC
CTCTCTTCGTTCCTCCTCCTCGTCTTCTCTTTCCCCCTCCCTAAAAGGCT
CTCTCCGACGTGCCCTTCTTGTCTTTCTGCTCGTTTTTCTTGCTTGTCTC
TTTGGTCATCTCCACATGCAGCAGCAGGGGAAGGAGGGAGGGGAGGAAGG
AGGCGTGTGGGGGAGAGGGAGGGATAGGCTGCTGGAGGGATGGCGTTGGT
TTTGGCTGTGTGCGTATGGTTTGATGCACCGCTTATTGGGAGGAGGAGGA
GGAGGGGGGGACGGGCTGAGGGGGAAGGAGAAGAGGTGGGGAAGAGGTTG
GGGTTGGACGCGGAATGGAATGGAGACGTGA
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Coding sequence (CDS) from alignment at chr19:365324..367904+

>NO19G01110.1 ID=NO19G01110.1|Name=NO19G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr19:365324..367904+ (Nannochloropsis oceanica)
ATGCTGATGGGTATAATTGATAACACCATTGGAGCCGAGATCGACCGTCA
GTACGACTACGGCCACCGGGTTCGCGTCTTGAACCACCACAACTGGATCG
ACTACCTCAAGTATAAAGGCGTGGCTATTGTCGCCCCCCGGGACATGTAC
TTGTATGTGCACTGGCGGGTACTGGAGCAGGAGGAGGCGAAGGAAGAGGG
GAGGGATGAGGGGATGGAGGGCAGGGTCTGTGGGCCAGCAATAGTCGTCG
TTGTTTTTTCCGACCCCCCTCCTTCCCTCCTTCCCTCCCTCGCTACCCCT
CGTCCCCTTCACCATGGTTGTGTACGCGCCGAGTGCATTACAGCTGGGTG
GGTCCTACGTCCTGTTCTTGTCCACGAAAAAAAGGAAAAGGAAGGGGAGG
GAGGGAGGGAAGGAGGGCAAGGAGGGCAAGGAGGCCTGCACACACATCAT
CTTCACAAGCACCATCACAAGCACCAGCACCATCACCATCACCATCACCA
TCACCACCACCATCACAATCATGCCCCCAAAAGGAAGCATCAGGTCGGAG
ACATTGACAAGGAGGAAGAGAAAGATGAGGTAAAAATACACACGAAATGT
ACCTATTTCTCTATGGCGGATCTGAAGGGTTATATCCCTAAGAGGCTGGT
GGACTTCGCCACTGAGCCCCAACCCCTCATGATCCACGCCATCTCCACCG
TCATCACGGCGGAAAACAAACGGAGCGATAAATTTGCGGTGGATGCGCGG
ATAGGTGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGAATTG
GAGGGGGAGGGATGTATGGCCGTATGTGAAGCGGATTCATCGAATCAATT
TGCCCGAGGAGGAGAGAAGGAAATATGGGTGGTTGAGGACGAAGGAGGAA
GAGGAGGAAGAAGAGAAACAAAAGGAGGGACGTAAGGATCATTGGTCTGA
GGGTACACGACGGCGACGGAGAGGGTCGGCGGGAGGAGGTGGAGGGGGAG
GAGGAGGGGGAGGAGGAGGGGGAGGGGGAGGACACTCCTTTTCGCCGTCG
TCTTCGCCGTTGCACAGGCAAAGAGGCACCTTGTCTTCCTCTCTTCGTTC
CTCCTCCTCGTCTTCTCTTTCCCCCTCCCTAAAAGGCTCTCTCCGACGTG
CCCTTCTTGTCTTTCTGCTCGTTTTTCTTGCTTGTCTCTTTGGTCATCTC
CACATGCAGCAGCAGGGGAAGGAGGGAGGGGAGGAAGGAGGCGTGTGGGG
GAGAGGGAGGGATAGGCTGCTGGAGGGATGGCGTTGGTTTTGGCTGTGTG
CGTATGGTTTGATGCACCGCTTATTGGGAGGAGGAGGAGGAGGGGGGGAC
GGGCTGAGGGGGAAGGAGAAGAGGTGGGGAAGAGGTTGGGGTTGGACGCG
GAATGGAATGGAGACGTGA
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Synonyms
Publications