NO19G01110.2, NO19G01110.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01110.2
Unique NameNO19G01110.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2682
Alignment locationchr19:365324..368332 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:365324..368332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G01110.2 vs.
Match: EWM23615.1 (Hypothetical protein Naga_101085g1 [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 7.800e-50
Identity = 134/238 (56.30%), Postives = 153/238 (64.29%), Query Frame = 0 
Query:    1 MSSST--TPPSFSSSSPSCSSSCRPSNHHHQHLPRKSLSSSASSISSPSHQPFRLSGTLYKRKDHLTWKWRPRLFLTHHEDFLLFYYLPSTSPSTAPPRGVVPLAGCEARVMDRDEV-RGSDRK---YPFELRHAWLDKPWVLAARSEEERRNWVEGLRRLRKEAQAAMRESVWGEMEGGRRRTDEGQEEEELEEGEEEEADEGEDGHLGRLVWPGYEEEVGTAMKRVLEFAEPSNGW 233
            MS++T  +PPS    +   + SCR          ++SLSSS    S P+    RLSG LYKRKDHLTWKWRPRLF  HHEDFLLFYYLP TSP T PPRGVVPL GC   VM   EV  G DRK   Y FE+RHAWL KPWVLAA +EEER  WV GLRRL +EA AA+  S+ GE           +EEE + E EEE   E E+ HL RLVWPGYEE V  A+KR+LE+AE   GW
Sbjct:    3 MSTATDVSPPSPLPVAERLAPSCRGPL-------KQSLSSSCLPASPPAPHLARLSGPLYKRKDHLTWKWRPRLFRAHHEDFLLFYYLPRTSPVTVPPRGVVPLVGCAVHVMHTAEVIGGGDRKRCGYVFEVRHAWLGKPWVLAAETEEERERWVRGLRRLIREAHAAL--SLGGE-----------EEEECMGEEEEEGEKEVEEEHLERLVWPGYEEAVQAALKRLLEYAEV--GW 218
The following BLAST results are available for this feature:
BLAST of NO19G01110.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23615.17.800e-5056.30Hypothetical protein Naga_101085g1 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01110NO19G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01110.2NO19G01110.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01110.2.cds1NO19G01110.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01110.2.cds2NO19G01110.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01110.2.cds3NO19G01110.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01110.2 ID=NO19G01110.2|Name=NO19G01110.2|organism=Nannochloropsis oceanica|type=mRNA|length=2682bp
CAGGCATATCCCAAGCACAAAAGGTATGTCGTCCAGCACCACCCCTCCCT
CCTTCTCCTCCTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCTCAAAT
CACCACCACCAGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCCTCCTC
AATTTCCTCCCCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCTCTACA
AACGCAAAGACCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTCTAACC
CACCACGAAGATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCCCCTTC
AACAGCCCCTCCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGCACGAG
TGATGGATCGGGACGAAGTGAGAGGCTCTGATAGAAAATACCCTTTTGAA
TTGAGGCATGCATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGGAGTGA
GGAGGAGAGGAGGAATTGGGTGGAAGGGTTAAGGAGGCTAAGGAAGGAAG
CGCAGGCAGCGATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAGGGAGA
AGGAGGACGGATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGGGAGGA
GGAGGAAGCGGATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGTGTGGC
CAGGGTATGAGGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGGAGTTC
GCCGAGCCCTCCAACGGCTGGAAGCTGCAATTCACCAAGCATGGAGTCAG
TGCGTACCGGAGGGAAGTGCCAAACACAAACGACTCCTTTACGACCCTCA
AGGGCCAGGGGGTGGTGCCGCATCATCCAGTGGCGATGCTGATGGGTATA
ATTGATAACACCATTGGAGCCGAGATCGACCGTCAGTACGACTACGGCCA
CCGGGTTCGCGTCTTGAACCACCACAACTGGATCGACTACCTCAAGTATA
AAGGCGTGGCTATTGTCGCCCCCCGGGACATGTACTTGTATGTGCACTGG
CGGGTACTGGAGCAGGAGGAGGCGAAGGAAGAGGGGAGGGATGAGGGGAT
GGAGGGCAGGGTCTGTGGGCCAGCAATAGTCGTCGTTGTTTTTTCCGACC
CCCCTCCTTCCCTCCTTCCCTCCCTCGCTACCCCTCGTCCCCTTCACCAT
GGTTGTGTACGCGCCGAGTGCATTACAGCTGGGTGGGTCCTACGTCCTGT
TCTTGTCCACGAAAAAAAGGAAAAGGAAGGGGAGGGAGGGAGGGAAGGAG
GGCAAGGAGGGCAAGGAGGCCTGCACACACATCATCTTCACAAGCACCAT
CACAAGCACCAGCACCATCACCATCACCATCACCATCACCACCACCATCA
CAATCATGCCCCCAAAAGGAAGCATCAGGTCGGAGACATTGACAAGGAGG
AAGAGAAAGATGAGGTAAAAATACACACGAAATGTACCTATTTCTCTATG
GCGGATCTGAAGGGTTATATCCCTAAGAGGCTGGTGGACTTCGCCACTGA
GCCCCAACCCCTCATGATCCACGCCATCTCCACCGTCATCACGGCGGAAA
ACAAACGGAGCGATAAATTTGCGGTGGATGCGCGGATAGGTGGGCGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGCTTGAATTGGAGGGGGAGGGATGT
ATGGCCGTATGTGAAGCGGATTCATCGAATCAATTTGCCCGAGGAGGAGA
GAAGGAAATATGGGTGGTTGAGGACGAAGGAGGAAGAGGAGGAAGAAGAG
AAACAAAAGGAGGGACGTAAGGATCATTGGTCTGAGGGTACACGACGGCG
ACGGAGAGGGTCGGCGGGAGGAGGTGGAGGGGGAGGAGGAGGGGGAGGAG
GAGGGGGAGGGGGAGGACACTCCTTTTCGCCGTCGTCTTCGCCGTTGCAC
AGGCAAAGAGGCACCTTGTCTTCCTCTCTTCGTTCCTCCTCCTCGTCTTC
TCTTTCCCCCTCCCTAAAAGGCTCTCTCCGACGTGCCCTTCTTGTCTTTC
TGCTCGTTTTTCTTGCTTGTCTCTTTGGTCATCTCCACATGCAGCAGCAG
GGGAAGGAGGGAGGGGAGGAAGGAGGCGTGTGGGGGAGAGGGAGGGATAG
GCTGCTGGAGGGATGGCGTTGGTTTTGGCTGTGTGCGTATGGTTTGATGC
ACCGCTTATTGGGAGGAGGAGGAGGAGGGGGGGACGGGCTGAGGGGGAAG
GAGAAGAGGTGGGGAAGAGGTTGGGGTTGGACGCGGAATGGAATGGAGAC
GTGAATGTATAGATGACAACCTCCTCACCCTCCTTTTCCTCCTTCTCCTC
CTCCTCCTCCTGCTGCTGCCGCCGCAGTAATTGATAGCAAGGTTTATACC
AAATGTGCAATGAAAGACAAAAGGGGGACAAGAGCTGAAGAAGAGGACGA
GGTTTATGTGCGAGTGTGCATGTGCGTGAAATCGAGGCCTTGTGTCAAGG
TATATTCACACGTCCTTATATTCTCCTTACACTTGGTATGCTAAGCTGGA
AGTATAAGAGCAAGCACAAGCACGTGCACAATCATATAATTACATACATA
CATACATATATATACATACATAAATATGTATATGTATATGTAGACGAAAG
AGGAAAGTCCCACACAGCCACATGGAGAAAAAACATCCAAGAGAGGAAGA
AATCAAAGCAAAGATTCATGATAGTAGTCGCA
back to top

protein sequence of NO19G01110.2

>NO19G01110.2-protein ID=NO19G01110.2-protein|Name=NO19G01110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=743bp
MSSSTTPPSFSSSSPSCSSSCRPSNHHHQHLPRKSLSSSASSISSPSHQP
FRLSGTLYKRKDHLTWKWRPRLFLTHHEDFLLFYYLPSTSPSTAPPRGVV
PLAGCEARVMDRDEVRGSDRKYPFELRHAWLDKPWVLAARSEEERRNWVE
GLRRLRKEAQAAMRESVWGEMEGGRRRTDEGQEEEELEEGEEEEADEGED
GHLGRLVWPGYEEEVGTAMKRVLEFAEPSNGWKLQFTKHGVSAYRREVPN
TNDSFTTLKGQGVVPHHPVAMLMGIIDNTIGAEIDRQYDYGHRVRVLNHH
NWIDYLKYKGVAIVAPRDMYLYVHWRVLEQEEAKEEGRDEGMEGRVCGPA
IVVVVFSDPPPSLLPSLATPRPLHHGCVRAECITAGWVLRPVLVHEKKEK
EGEGGREGGQGGQGGLHTHHLHKHHHKHQHHHHHHHHHHHHHNHAPKRKH
QVGDIDKEEEKDEVKIHTKCTYFSMADLKGYIPKRLVDFATEPQPLMIHA
ISTVITAENKRSDKFAVDARIGGREGGREGGREGLNWRGRDVWPYVKRIH
RINLPEEERRKYGWLRTKEEEEEEEKQKEGRKDHWSEGTRRRRRGSAGGG
GGGGGGGGGGGGGGHSFSPSSSPLHRQRGTLSSSLRSSSSSSLSPSLKGS
LRRALLVFLLVFLACLFGHLHMQQQGKEGGEEGGVWGRGRDRLLEGWRWF
WLCAYGLMHRLLGGGGGGGDGLRGKEKRWGRGWGWTRNGMET*
back to top

mRNA from alignment at chr19:365324..368332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01110.2 ID=NO19G01110.2|Name=NO19G01110.2|organism=Nannochloropsis oceanica|type=mRNA|length=3009bp|location=Sequence derived from alignment at chr19:365324..368332+ (Nannochloropsis oceanica)
CAGGCATATCCCAAGCACAAAAGGTATGTCGTCCAGCACCACCCCTCCCT
CCTTCTCCTCCTCCTCCCCATCCTGCTCCTCGTCTTGTCGCCCCTCAAAT
CACCACCACCAGCATCTACCAAGAAAAAGCCTTTCGTCCTCCGCCTCCTC
AATTTCCTCCCCCTCCCACCAACCCTTCCGTCTCTCCGGCACTCTCTACA
AACGCAAAGACCATTTAACCTGGAAATGGCGTCCGCGTCTCTTTCTAACC
CACCACGAAGATTTTCTCCTCTTTTACTACCTGCCGTCTACTTCCCCTTC
AACAGCCCCTCCTAGGGGGGTAGTGCCTTTGGCAGGGTGTGAAGCACGAG
TGATGGATCGGGACGAAGTGAGAGGCTCTGATAGAAAATACCCTTTTGAA
TTGAGGCATGCATGGTTGGATAAGCCCTGGGTATTGGCTGCGAGGAGTGA
GGAGGAGAGGAGGAATTGGGTGGAAGGGTTAAGGAGGCTAAGGAAGGAAG
CGCAGGCAGCGATGAGGGAGAGTGTGTGGGGAGAGATGGAGGGAGGGAGA
AGGAGGACGGATGAGGGGCAGGAAGAGGAAGAGTTGGAGGAGGGGGAGGA
GGAGGAAGCGGATGAGGGGGAGGACGGGCATTTGGGGAGGTTAGTGTGGC
CAGGGTATGAGGAGGAGGTGGGGACGGCAATGAAACGGGTGTTGGAGTTC
GCCGAGGTGCGTGATTCAAACTGTCAATCACCCATTCATCTGTCCACCAA
TCGATCTTTTGAATTATAGACTAATTACTCCTCATTTCGCGTATTCATAC
TTATCCTACTATTTCATCCTATCCCTCCCTCCCCTTCAGCCCTCCAACGG
CTGGAAGCTGCAATTCACCAAGCATGGAGTCAGTGCGTACCGGAGGGAAG
TGCCAAACACAAACGACTCCTTTACGACCCTCAAGGGCCAGGGGGTGGTG
CCGCATCATCCAGTGGCGATGCTGATGGGTATAATTGATAACACCATTGG
AGCCGGTACGTGTATATTATTAATTGTTTTTTGGTGTATTTATTTATTTG
TATATTTAATTGTATTTGTTTATTTATTTATCCATTTATCCATCTATTCA
TCTATTAATTCATCTATTTATGGATTTATGAATTCGCGTATTCATAGATT
TATGCATTTAATGTATATCTTACACAATTGTAATAATCCCTGCCAACAGA
GATCGACCGTCAGTACGACTACGGCCACCGGGTTCGCGTCTTGAACCACC
ACAACTGGATCGACTACCTCAAGTATAAAGGCGTGGCTATTGTCGCCCCC
CGGGACATGTACTTGTATGTGCACTGGCGGGTACTGGAGCAGGAGGAGGC
GAAGGAAGAGGGGAGGGATGAGGGGATGGAGGGCAGGGTCTGTGGGCCAG
CAATAGTCGTCGTTGTTTTTTCCGACCCCCCTCCTTCCCTCCTTCCCTCC
CTCGCTACCCCTCGTCCCCTTCACCATGGTTGTGTACGCGCCGAGTGCAT
TACAGCTGGGTGGGTCCTACGTCCTGTTCTTGTCCACGAAAAAAAGGAAA
AGGAAGGGGAGGGAGGGAGGGAAGGAGGGCAAGGAGGGCAAGGAGGCCTG
CACACACATCATCTTCACAAGCACCATCACAAGCACCAGCACCATCACCA
TCACCATCACCATCACCACCACCATCACAATCATGCCCCCAAAAGGAAGC
ATCAGGTCGGAGACATTGACAAGGAGGAAGAGAAAGATGAGGTAAAAATA
CACACGAAATGTACCTATTTCTCTATGGCGGATCTGAAGGGTTATATCCC
TAAGAGGCTGGTGGACTTCGCCACTGAGCCCCAACCCCTCATGATCCACG
CCATCTCCACCGTCATCACGGCGGAAAACAAACGGAGCGATAAATTTGCG
GTGGATGCGCGGATAGGTGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGCTTGAATTGGAGGGGGAGGGATGTATGGCCGTATGTGAAGCGGATTC
ATCGAATCAATTTGCCCGAGGAGGAGAGAAGGAAATATGGGTGGTTGAGG
ACGAAGGAGGAAGAGGAGGAAGAAGAGAAACAAAAGGAGGGACGTAAGGA
TCATTGGTCTGAGGGTACACGACGGCGACGGAGAGGGTCGGCGGGAGGAG
GTGGAGGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGGGGAGGACACTCC
TTTTCGCCGTCGTCTTCGCCGTTGCACAGGCAAAGAGGCACCTTGTCTTC
CTCTCTTCGTTCCTCCTCCTCGTCTTCTCTTTCCCCCTCCCTAAAAGGCT
CTCTCCGACGTGCCCTTCTTGTCTTTCTGCTCGTTTTTCTTGCTTGTCTC
TTTGGTCATCTCCACATGCAGCAGCAGGGGAAGGAGGGAGGGGAGGAAGG
AGGCGTGTGGGGGAGAGGGAGGGATAGGCTGCTGGAGGGATGGCGTTGGT
TTTGGCTGTGTGCGTATGGTTTGATGCACCGCTTATTGGGAGGAGGAGGA
GGAGGGGGGGACGGGCTGAGGGGGAAGGAGAAGAGGTGGGGAAGAGGTTG
GGGTTGGACGCGGAATGGAATGGAGACGTGAATGTATAGATGACAACCTC
CTCACCCTCCTTTTCCTCCTTCTCCTCCTCCTCCTCCTGCTGCTGCCGCC
GCAGTAATTGATAGCAAGGTTTATACCAAATGTGCAATGAAAGACAAAAG
GGGGACAAGAGCTGAAGAAGAGGACGAGGTTTATGTGCGAGTGTGCATGT
GCGTGAAATCGAGGCCTTGTGTCAAGGTATATTCACACGTCCTTATATTC
TCCTTACACTTGGTATGCTAAGCTGGAAGTATAAGAGCAAGCACAAGCAC
GTGCACAATCATATAATTACATACATACATACATATATATACATACATAA
ATATGTATATGTATATGTAGACGAAAGAGGAAAGTCCCACACAGCCACAT
GGAGAAAAAACATCCAAGAGAGGAAGAAATCAAAGCAAAGATTCATGATA
GTAGTCGCA
back to top

Coding sequence (CDS) from alignment at chr19:365324..368332+

>NO19G01110.2 ID=NO19G01110.2|Name=NO19G01110.2|organism=Nannochloropsis oceanica|type=CDS|length=2229bp|location=Sequence derived from alignment at chr19:365324..368332+ (Nannochloropsis oceanica)
ATGTCGTCCAGCACCACCCCTCCCTCCTTCTCCTCCTCCTCCCCATCCTG
CTCCTCGTCTTGTCGCCCCTCAAATCACCACCACCAGCATCTACCAAGAA
AAAGCCTTTCGTCCTCCGCCTCCTCAATTTCCTCCCCCTCCCACCAACCC
TTCCGTCTCTCCGGCACTCTCTACAAACGCAAAGACCATTTAACCTGGAA
ATGGCGTCCGCGTCTCTTTCTAACCCACCACGAAGATTTTCTCCTCTTTT
ACTACCTGCCGTCTACTTCCCCTTCAACAGCCCCTCCTAGGGGGGTAGTG
CCTTTGGCAGGGTGTGAAGCACGAGTGATGGATCGGGACGAAGTGAGAGG
CTCTGATAGAAAATACCCTTTTGAATTGAGGCATGCATGGTTGGATAAGC
CCTGGGTATTGGCTGCGAGGAGTGAGGAGGAGAGGAGGAATTGGGTGGAA
GGGTTAAGGAGGCTAAGGAAGGAAGCGCAGGCAGCGATGAGGGAGAGTGT
GTGGGGAGAGATGGAGGGAGGGAGAAGGAGGACGGATGAGGGGCAGGAAG
AGGAAGAGTTGGAGGAGGGGGAGGAGGAGGAAGCGGATGAGGGGGAGGAC
GGGCATTTGGGGAGGTTAGTGTGGCCAGGGTATGAGGAGGAGGTGGGGAC
GGCAATGAAACGGGTGTTGGAGTTCGCCGAGCCCTCCAACGGCTGGAAGC
TGCAATTCACCAAGCATGGAGTCAGTGCGTACCGGAGGGAAGTGCCAAAC
ACAAACGACTCCTTTACGACCCTCAAGGGCCAGGGGGTGGTGCCGCATCA
TCCAGTGGCGATGCTGATGGGTATAATTGATAACACCATTGGAGCCGAGA
TCGACCGTCAGTACGACTACGGCCACCGGGTTCGCGTCTTGAACCACCAC
AACTGGATCGACTACCTCAAGTATAAAGGCGTGGCTATTGTCGCCCCCCG
GGACATGTACTTGTATGTGCACTGGCGGGTACTGGAGCAGGAGGAGGCGA
AGGAAGAGGGGAGGGATGAGGGGATGGAGGGCAGGGTCTGTGGGCCAGCA
ATAGTCGTCGTTGTTTTTTCCGACCCCCCTCCTTCCCTCCTTCCCTCCCT
CGCTACCCCTCGTCCCCTTCACCATGGTTGTGTACGCGCCGAGTGCATTA
CAGCTGGGTGGGTCCTACGTCCTGTTCTTGTCCACGAAAAAAAGGAAAAG
GAAGGGGAGGGAGGGAGGGAAGGAGGGCAAGGAGGGCAAGGAGGCCTGCA
CACACATCATCTTCACAAGCACCATCACAAGCACCAGCACCATCACCATC
ACCATCACCATCACCACCACCATCACAATCATGCCCCCAAAAGGAAGCAT
CAGGTCGGAGACATTGACAAGGAGGAAGAGAAAGATGAGGTAAAAATACA
CACGAAATGTACCTATTTCTCTATGGCGGATCTGAAGGGTTATATCCCTA
AGAGGCTGGTGGACTTCGCCACTGAGCCCCAACCCCTCATGATCCACGCC
ATCTCCACCGTCATCACGGCGGAAAACAAACGGAGCGATAAATTTGCGGT
GGATGCGCGGATAGGTGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GCTTGAATTGGAGGGGGAGGGATGTATGGCCGTATGTGAAGCGGATTCAT
CGAATCAATTTGCCCGAGGAGGAGAGAAGGAAATATGGGTGGTTGAGGAC
GAAGGAGGAAGAGGAGGAAGAAGAGAAACAAAAGGAGGGACGTAAGGATC
ATTGGTCTGAGGGTACACGACGGCGACGGAGAGGGTCGGCGGGAGGAGGT
GGAGGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGGGGAGGACACTCCTT
TTCGCCGTCGTCTTCGCCGTTGCACAGGCAAAGAGGCACCTTGTCTTCCT
CTCTTCGTTCCTCCTCCTCGTCTTCTCTTTCCCCCTCCCTAAAAGGCTCT
CTCCGACGTGCCCTTCTTGTCTTTCTGCTCGTTTTTCTTGCTTGTCTCTT
TGGTCATCTCCACATGCAGCAGCAGGGGAAGGAGGGAGGGGAGGAAGGAG
GCGTGTGGGGGAGAGGGAGGGATAGGCTGCTGGAGGGATGGCGTTGGTTT
TGGCTGTGTGCGTATGGTTTGATGCACCGCTTATTGGGAGGAGGAGGAGG
AGGGGGGGACGGGCTGAGGGGGAAGGAGAAGAGGTGGGGAAGAGGTTGGG
GTTGGACGCGGAATGGAATGGAGACGTGA
back to top
Synonyms
Publications