NO19G00480, NO19G00480 (gene) Nannochloropsis oceanica

Overview
NameNO19G00480
Unique NameNO19G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1441
Alignment locationchr19:182447..183887 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein S4/S9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:182447..183887 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0019843rRNA binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR022801Ribosomal_S4/S9
IPR002942S4_RNA-bd
IPR001912Ribosomal_S4/S9_N
Homology
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: XP_005853756.1 (U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >EKU22604.1 U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >EWM23552.1 Ribosomal protein S4/S9 [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 7.200e-90
Identity = 166/183 (90.71%), Postives = 177/183 (96.72%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLLGN 184
            MRQL+HHEQKLLKKVDFLQWKSDQNIRE+K+LRRYHIQDREDYVKYNKICGHITKLT+KLK LKPEDEFRIKMTDDLL+KLYNMGLIPTKKSL QCETLAAS+FCRRRLPVVMVR+KMAETLKEA+TFIEQG VRVGPTVV+DP FLV+RS EDFLTWVDSSKIKRAV+ YNDKLDDFDLLGN
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN 183
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: KXZ56634.1 (hypothetical protein GPECTOR_1g571 [Gonium pectorale])

HSP 1 Score: 281.6 bits (719), Expect = 1.800e-72
Identity = 135/181 (74.59%), Postives = 161/181 (88.95%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLL 182
            MRQLKHHE+KLLKKVDFL+WKSD N+RE++V+RRYHIQDR+DY KYNKICG ITKLT+ LK L P+D  RI++TD LL KLYNMG++PTKKSL+QC+ LA +SFCRRRL VVMVR+ MAETL+EA TFIEQG VRVGPT V+DPAF V+R+ EDF+TWVD+SK+KR V+KYNDKLDD+DLL
Sbjct:    1 MRQLKHHEKKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKICGMITKLTNILKHLDPKDTTRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATASFCRRRLAVVMVRLNMAETLREAATFIEQGHVRVGPTTVTDPAFHVTRTMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: XP_002956026.1 (hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis] >EFJ42986.1 hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis])

HSP 1 Score: 280.8 bits (717), Expect = 3.000e-72
Identity = 135/181 (74.59%), Postives = 161/181 (88.95%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLL 182
            MRQLK+HEQKLLKKVDFL+WKSD N+RE++VLRRYHIQDR+DY KYNKICG ITKLTS LK L P+D  RI++TD LL KLYNMG++PTKKSL+QC+ LA ++FCRRRL VVMVR+KM+ETL+EA TFIEQG VRVGP  V+DPAF V+R+ EDF+TWVD+SK+KR V+KYNDKLDD+DLL
Sbjct:    1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCRRRLAVVMVRLKMSETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: CEO98892.1 (hypothetical protein PBRA_007006 [Plasmodiophora brassicae])

HSP 1 Score: 273.5 bits (698), Expect = 4.900e-70
Identity = 131/183 (71.58%), Postives = 157/183 (85.79%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLLGN 184
            MRQLKHHEQ+LLKKVDFLQWK+DQ+ RE+ +LRRYHIQDREDYVKYN++CG I KL+++L  L P D FR K T+ LL KLYNMGLI +KKSL  C  + ASSFCRRRLPVVMVR+KMAETL+EA+TFIE G VRVGP VV+DPA L++R+ EDF+TW D+SKIKR +MKY+D+LDD+DLLGN
Sbjct:    1 MRQLKHHEQRLLKKVDFLQWKTDQSQREITILRRYHIQDREDYVKYNRLCGVIKKLSNQLLALDPRDPFRCKTTEHLLEKLYNMGLITSKKSLSLCANITASSFCRRRLPVVMVRIKMAETLREAVTFIEAGHVRVGPNVVNDPAMLITRTLEDFVTWTDTSKIKRHIMKYSDQLDDYDLLGN 183
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: PNH12075.1 (U3 small nucleolar ribonucleoprotein imp3 [Tetrabaena socialis])

HSP 1 Score: 271.9 bits (694), Expect = 1.400e-69
Identity = 130/181 (71.82%), Postives = 161/181 (88.95%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLL 182
            MRQLK+HE+KLLKKVDFL+WKSD N+RE++V+RRYHIQDR+DY KYNKI G ITKLT+ LK L P+D  RI++TD LL KL+NM ++PTKKSL+QC+ LAA+SFCRRRL VVMVR+KMAETL+EA+TFIEQG VRVGP  +++PA+ V+RS EDF+TWVD+SK+KR V+KYNDKLDD+DLL
Sbjct:    1 MRQLKYHEKKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKITGMITKLTNMLKQLDPKDTTRIELTDRLLEKLHNMAVLPTKKSLVQCDKLAAASFCRRRLAVVMVRLKMAETLREAVTFIEQGHVRVGPETITEPAYHVTRSMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: XP_001703317.1 (small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii] >PNW85079.1 hypothetical protein CHLRE_03g170750v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 271.2 bits (692), Expect = 2.400e-69
Identity = 131/181 (72.38%), Postives = 157/181 (86.74%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLL 182
            MRQLKHHEQKLLKKVDFL+WKSD N+RE++V+RRYHIQDR+DY KYNKI G +TKLTS LK L  +D  R+++TD LL KL+ MG+IPTKKSL+QC+ L  +SFCRRRL VVMVR+KMAETL+EA TFIEQG VRVGP  V+DPAF V+R+ EDF+TWVD+SK+KR V+KYNDKLDD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFCRRRLAVVMVRLKMAETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: GAQ90652.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Klebsormidium nitens])

HSP 1 Score: 270.8 bits (691), Expect = 3.200e-69
Identity = 127/182 (69.78%), Postives = 158/182 (86.81%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLLG 183
            MR+LK HEQKLLKKVDFLQWK++ N+REV+ +R+YHI DR+DY KYNK+CG +TKLTS LK L P+D FRI++TD LL KLYNMG+IPT+KSL  C+ L+ SSFCRRRL V++VR+K AET++EA+TF+EQG +RVGP  V+DPAFLV R+ EDF+TWVD+SKIKR V+KYNDKLDD+DLLG
Sbjct:    1 MRKLKFHEQKLLKKVDFLQWKNEHNLREVQAMRQYHITDRDDYKKYNKLCGMVTKLTSILKKLDPQDPFRIELTDQLLEKLYNMGVIPTRKSLALCDKLSTSSFCRRRLAVMLVRLKFAETMREAVTFVEQGHIRVGPETVTDPAFLVVRNMEDFVTWVDTSKIKRKVLKYNDKLDDYDLLG 182
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: CBJ48426.1 (small nucleolar ribonucleoprotein U3 component [Ectocarpus siliculosus])

HSP 1 Score: 269.6 bits (688), Expect = 7.000e-69
Identity = 135/182 (74.18%), Postives = 157/182 (86.26%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLLG 183
            MR+LK+HEQKLLKKVDFLQWKSDQNIRE++VLRRY +Q+R+DYVKYNKI G ITKLT++LK L   DEFRIKMT+ LL KL+ MG+I TKKSL + ET + SSFCRRRLPVVMVR+KM+ETL EA T+IEQG VRVGP  V+DPAFLV+RS EDF+TWVD SKIKRA+  Y DK+DDFDLLG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 182
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: KNE63619.1 (ribosomal protein S4 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 268.9 bits (686), Expect = 1.200e-68
Identity = 124/181 (68.51%), Postives = 154/181 (85.08%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLL 182
            +RQLKHHEQKLLKKVDFLQWK++ N+RE++V+RRYHIQ REDY KYN++CG I +L  ++  L   D F+   TD LLTKLYNMG +PTKK+L QCE +  S+ CRRRLP+VMVR+KMAET++EA+TF+EQG +RVGP VV+DPAFLV+R+ EDF+TWVD+SKIKR +MKYNDKLDDFDLL
Sbjct:    2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKITVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGPQVVTDPAFLVTRNFEDFITWVDTSKIKRKIMKYNDKLDDFDLL 182
[Close]
BLAST of NO19G00480 vs. NCBI_GenBank
Match: KNE64830.1 (hypothetical protein AMAG_10166 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 268.9 bits (686), Expect = 1.200e-68
Identity = 124/181 (68.51%), Postives = 154/181 (85.08%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLL 182
            +RQLKHHEQKLLKKVDFLQWK++ N+RE++V+RRYHIQ REDY KYN++CG I +L  ++  L   D F+   TD LLTKLYNMG +PTKK+L QCE +  S+ CRRRLP+VMVR+KMAET++EA+TF+EQG +RVGP VV+DPAFLV+R+ EDF+TWVD+SKIKR +MKYNDKLDDFDLL
Sbjct:    2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKMTVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGPQVVTDPAFLVTRNFEDFITWVDTSKIKRKIMKYNDKLDDFDLL 182
The following BLAST results are available for this feature:
BLAST of NO19G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853756.17.200e-9090.71U3 small nucleolar ribonucleoprotein IMP3 [Nannoch... [more]
KXZ56634.11.800e-7274.59hypothetical protein GPECTOR_1g571 [Gonium pectora... [more]
XP_002956026.13.000e-7274.59hypothetical protein VOLCADRAFT_76931 [Volvox cart... [more]
CEO98892.14.900e-7071.58hypothetical protein PBRA_007006 [Plasmodiophora b... [more]
PNH12075.11.400e-6971.82U3 small nucleolar ribonucleoprotein imp3 [Tetraba... [more]
XP_001703317.12.400e-6972.38small nucleolar ribonucleoprotein U3 component [Ch... [more]
GAQ90652.13.200e-6969.78Alpha-L RNA-binding motif/Ribosomal protein S4 fam... [more]
CBJ48426.17.000e-6974.18small nucleolar ribonucleoprotein U3 component [Ec... [more]
KNE63619.11.200e-6868.51ribosomal protein S4 [Allomyces macrogynus ATCC 38... [more]
KNE64830.11.200e-6868.51hypothetical protein AMAG_10166 [Allomyces macrogy... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00480.1NO19G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606984gene_9738Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100857g1gene6903Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00480.1NO19G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00480 ID=NO19G00480|Name=NO19G00480|organism=Nannochloropsis oceanica|type=gene|length=1441bp
AACAGGTTGGAAAGAACGAGGGTGAGCCAAATAAAACCTCCCCACTATCT
AGATCTCAGGAGATAAGCACATCCCCCAGTGTCCCCCCCTCGCTCCTAAG
CCTCCGCCTTGAACCAACAAGACGATGCGGCAACTTAAGCACCACGAACA
AAAGCTCCTGAAGAAAGTTGATTTTTTGCAATGGAAGAGCGACCAGAACA
TCCGCGAGGTCAAGGTTTTGCGTCGGTATCACATCCAGGACCGGGAAGAC
TACGTCAAgtaagtgcaggggcgaggagggaggcaagaaaatagacaaag
aggagaggtatatgttaaatgactcagtgggtggctatgtgtagctgtgg
acgtctgtttgctaggctctgtcgtagtgcggtttccttcgcaagtctcg
tccttccccgtcacagtcccttacatcctcccgcgctctctccctttttc
ctttcagGTATAATAAGATCTGCGGCCACATCACCAAACTGACGTCTAAG
CTAAAAGGCCTCAAGCCCGAGGATGAATTTCGGATCAAGATGACGGACGA
Tgtatgaagggatggagggagggagggatggaaagagggcaacaaagatt
ccattggcaaacggggtagacaaagggactcccacagcggcacaaagcgt
cgatagacgtcagaggacagataataaaatagtgaacaacaaagaagaga
atgaataatttactctctctcaccatacccacccatccaccttcaaaatc
cagCTCCTGACCAAGCTCTACAATATGGGCCTGATTCCTACCAAGAAATC
TTTGATTCAATGCGAGACACTTGCTGCGTCTTCCTTCTGTCGGCGTCGGC
TGCCGGTGGTGATGGTACGGGTAAAAATGGCCGAGACGTTGAAGGAGGCG
ATAACCTTTATCGAGCAGGGACAAGTGCGCGTCGGGCCAACAGgtgggtg
ttggtagagaggtctgtctatgagagttatggatgtgccttagatgatat
cgtctttcctttgcatcatgctcttattaatctcgcacacttctcttccc
tacccttcccttctctcgtttcaaaggatctcttgcttctctcacatctt
cacagagccattcacctcatattcctccttccctaccttcctcccttcct
tccttccttcctctctttctcaaaaccatccctcccccttcctagTCGTC
TCCGACCCGGCCTTCCTAGTCAGCCGGAGCCACGAGGACTTCTTGACGTG
GGTGGACAGTTCGAAGATCAAACGCGCCGTCATGAAGTACAACGACAAGC
TCGACGATTTTGACCTCCTCGGAAATTAATTAGGCTGCCTCCTTCTTCCT
TTTCCTGTTGTAATGCGGGCGGGGATTTGAAAGACACGTGTACATGAAGT
AACAAAATGAAAATATTTAAGCCAGACGGACCTGTGCCGGC
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protein sequence of NO19G00480.1

>NO19G00480.1-protein ID=NO19G00480.1-protein|Name=NO19G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKIC
GHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLA
ASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSR
SHEDFLTWVDSSKIKRAVMKYNDKLDDFDLLGN*
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Synonyms
Publications