NO19G00480.1, NO19G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00480.1
Unique NameNO19G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length788
Alignment locationchr19:182447..183887 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:182447..183887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00480.1 vs.
Match: XP_005853756.1 (U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526]; EKU22604.1 U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526]; EWM23552.1 Ribosomal protein S4/S9 [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 7.200e-90
Identity = 166/183 (90.71%), Postives = 177/183 (96.72%), Query Frame = 0 
Query:    1 MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKICGHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLAASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSRSHEDFLTWVDSSKIKRAVMKYNDKLDDFDLLGN 184
            MRQL+HHEQKLLKKVDFLQWKSDQNIRE+K+LRRYHIQDREDYVKYNKICGHITKLT+KLK LKPEDEFRIKMTDDLL+KLYNMGLIPTKKSL QCETLAAS+FCRRRLPVVMVR+KMAETLKEA+TFIEQG VRVGPTVV+DP FLV+RS EDFLTWVDSSKIKRAV+ YNDKLDDFDLLGN
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN 183
The following BLAST results are available for this feature:
BLAST of NO19G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853756.17.200e-9090.71U3 small nucleolar ribonucleoprotein IMP3 [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00480NO19G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00480.1NO19G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00480.1.cds1NO19G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00480.1.cds2NO19G00480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00480.1.cds3NO19G00480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00480.1.cds4NO19G00480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00480.1 ID=NO19G00480.1|Name=NO19G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=788bp
AACAGGTTGGAAAGAACGAGGGTGAGCCAAATAAAACCTCCCCACTATCT
AGATCTCAGGAGATAAGCACATCCCCCAGTGTCCCCCCCTCGCTCCTAAG
CCTCCGCCTTGAACCAACAAGACGATGCGGCAACTTAAGCACCACGAACA
AAAGCTCCTGAAGAAAGTTGATTTTTTGCAATGGAAGAGCGACCAGAACA
TCCGCGAGGTCAAGGTTTTGCGTCGGTATCACATCCAGGACCGGGAAGAC
TACGTCAAGTATAATAAGATCTGCGGCCACATCACCAAACTGACGTCTAA
GCTAAAAGGCCTCAAGCCCGAGGATGAATTTCGGATCAAGATGACGGACG
ATCTCCTGACCAAGCTCTACAATATGGGCCTGATTCCTACCAAGAAATCT
TTGATTCAATGCGAGACACTTGCTGCGTCTTCCTTCTGTCGGCGTCGGCT
GCCGGTGGTGATGGTACGGGTAAAAATGGCCGAGACGTTGAAGGAGGCGA
TAACCTTTATCGAGCAGGGACAAGTGCGCGTCGGGCCAACAGTCGTCTCC
GACCCGGCCTTCCTAGTCAGCCGGAGCCACGAGGACTTCTTGACGTGGGT
GGACAGTTCGAAGATCAAACGCGCCGTCATGAAGTACAACGACAAGCTCG
ACGATTTTGACCTCCTCGGAAATTAATTAGGCTGCCTCCTTCTTCCTTTT
CCTGTTGTAATGCGGGCGGGGATTTGAAAGACACGTGTACATGAAGTAAC
AAAATGAAAATATTTAAGCCAGACGGACCTGTGCCGGC
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protein sequence of NO19G00480.1

>NO19G00480.1-protein ID=NO19G00480.1-protein|Name=NO19G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKIC
GHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLA
ASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSR
SHEDFLTWVDSSKIKRAVMKYNDKLDDFDLLGN*
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mRNA from alignment at chr19:182447..183887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00480.1 ID=NO19G00480.1|Name=NO19G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at chr19:182447..183887- (Nannochloropsis oceanica)
AACAGGTTGGAAAGAACGAGGGTGAGCCAAATAAAACCTCCCCACTATCT
AGATCTCAGGAGATAAGCACATCCCCCAGTGTCCCCCCCTCGCTCCTAAG
CCTCCGCCTTGAACCAACAAGACGATGCGGCAACTTAAGCACCACGAACA
AAAGCTCCTGAAGAAAGTTGATTTTTTGCAATGGAAGAGCGACCAGAACA
TCCGCGAGGTCAAGGTTTTGCGTCGGTATCACATCCAGGACCGGGAAGAC
TACGTCAAGTAAGTGCAGGGGCGAGGAGGGAGGCAAGAAAATAGACAAAG
AGGAGAGGTATATGTTAAATGACTCAGTGGGTGGCTATGTGTAGCTGTGG
ACGTCTGTTTGCTAGGCTCTGTCGTAGTGCGGTTTCCTTCGCAAGTCTCG
TCCTTCCCCGTCACAGTCCCTTACATCCTCCCGCGCTCTCTCCCTTTTTC
CTTTCAGGTATAATAAGATCTGCGGCCACATCACCAAACTGACGTCTAAG
CTAAAAGGCCTCAAGCCCGAGGATGAATTTCGGATCAAGATGACGGACGA
TGTATGAAGGGATGGAGGGAGGGAGGGATGGAAAGAGGGCAACAAAGATT
CCATTGGCAAACGGGGTAGACAAAGGGACTCCCACAGCGGCACAAAGCGT
CGATAGACGTCAGAGGACAGATAATAAAATAGTGAACAACAAAGAAGAGA
ATGAATAATTTACTCTCTCTCACCATACCCACCCATCCACCTTCAAAATC
CAGCTCCTGACCAAGCTCTACAATATGGGCCTGATTCCTACCAAGAAATC
TTTGATTCAATGCGAGACACTTGCTGCGTCTTCCTTCTGTCGGCGTCGGC
TGCCGGTGGTGATGGTACGGGTAAAAATGGCCGAGACGTTGAAGGAGGCG
ATAACCTTTATCGAGCAGGGACAAGTGCGCGTCGGGCCAACAGGTGGGTG
TTGGTAGAGAGGTCTGTCTATGAGAGTTATGGATGTGCCTTAGATGATAT
CGTCTTTCCTTTGCATCATGCTCTTATTAATCTCGCACACTTCTCTTCCC
TACCCTTCCCTTCTCTCGTTTCAAAGGATCTCTTGCTTCTCTCACATCTT
CACAGAGCCATTCACCTCATATTCCTCCTTCCCTACCTTCCTCCCTTCCT
TCCTTCCTTCCTCTCTTTCTCAAAACCATCCCTCCCCCTTCCTAGTCGTC
TCCGACCCGGCCTTCCTAGTCAGCCGGAGCCACGAGGACTTCTTGACGTG
GGTGGACAGTTCGAAGATCAAACGCGCCGTCATGAAGTACAACGACAAGC
TCGACGATTTTGACCTCCTCGGAAATTAATTAGGCTGCCTCCTTCTTCCT
TTTCCTGTTGTAATGCGGGCGGGGATTTGAAAGACACGTGTACATGAAGT
AACAAAATGAAAATATTTAAGCCAGACGGACCTGTGCCGGC
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Coding sequence (CDS) from alignment at chr19:182447..183887-

>NO19G00480.1 ID=NO19G00480.1|Name=NO19G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr19:182447..183887- (Nannochloropsis oceanica)
ATGCGGCAACTTAAGCACCACGAACAAAAGCTCCTGAAGAAAGTTGATTT
TTTGCAATGGAAGAGCGACCAGAACATCCGCGAGGTCAAGGTTTTGCGTC
GGTATCACATCCAGGACCGGGAAGACTACGTCAAGTATAATAAGATCTGC
GGCCACATCACCAAACTGACGTCTAAGCTAAAAGGCCTCAAGCCCGAGGA
TGAATTTCGGATCAAGATGACGGACGATCTCCTGACCAAGCTCTACAATA
TGGGCCTGATTCCTACCAAGAAATCTTTGATTCAATGCGAGACACTTGCT
GCGTCTTCCTTCTGTCGGCGTCGGCTGCCGGTGGTGATGGTACGGGTAAA
AATGGCCGAGACGTTGAAGGAGGCGATAACCTTTATCGAGCAGGGACAAG
TGCGCGTCGGGCCAACAGTCGTCTCCGACCCGGCCTTCCTAGTCAGCCGG
AGCCACGAGGACTTCTTGACGTGGGTGGACAGTTCGAAGATCAAACGCGC
CGTCATGAAGTACAACGACAAGCTCGACGATTTTGACCTCCTCGGAAATT
AA
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Synonyms
Publications