NO19G00390, NO19G00390 (gene) Nannochloropsis oceanica

Overview
NameNO19G00390
Unique NameNO19G00390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1668
Alignment locationchr19:153214..159227 +

Link to JBrowse

Properties
Property NameValue
Descriptionproton gradient regulation 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:153214..159227 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009773photosynthetic electron transport in photosystem I
GO:0009644response to high light intensity
Vocabulary: INTERPRO
TermDefinition
IPR037497PGR5
Homology
BLAST of NO19G00390 vs. NCBI_GenBank
Match: EWM23526.1 (hypothetical protein Naga_100940g3 [Nannochloropsis gaditana])

HSP 1 Score: 152.1 bits (383), Expect = 1.100e-33
Identity = 83/129 (64.34%), Postives = 91/129 (70.54%), Query Frame = 0
Query:    1 MARGLFTWGALLLLALFALLSSSHAFFVAAPARTALYSSPSIQPQQ-RQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFLW 129
            MAR    W  LL+  L         FF+                 + RQQG M+MMGGKVAKFG FSPAV+VAKI+LGE+KLNKVRGKAISLHSQAITEFC FVGAQGKTRNRLIKKAKTNGD+LGFLW
Sbjct:    1 MARSPCLWSGLLVALLLXXXXXXXXFFMXXXXXXXXXXXXXXXXXRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: CBJ33332.1 (proton gradient regulation [Ectocarpus siliculosus])

HSP 1 Score: 114.4 bits (285), Expect = 2.600e-22
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 0
Query:   12 LLLALFALLSSSHAFFVAAPARTALYSSPSI---------------------------QPQQRQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFLW 129
            +L  L A +++S A FV APAR  L + PS+                           +P++  +G + M  GKV+KFGIFSPAVV AK++LGE +LNK+RGK I+LHSQ I E+C +VGA  K R  LI+KAK NGDDLGFL+
Sbjct:    4 ILCILLACVAASQA-FVVAPARAGLSTMPSLREGSFVCSLPSTASLTVAQGGGNVAVSRPRRTSRGELRM--GKVSKFGIFSPAVVAAKVILGESRLNKIRGKGIALHSQVIQEYCRWVGAPPKVRGMLIRKAKGNGDDLGFLF 144          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: XP_009038064.1 (hypothetical protein AURANDRAFT_27980 [Aureococcus anophagefferens] >EGB07449.1 hypothetical protein AURANDRAFT_27980 [Aureococcus anophagefferens])

HSP 1 Score: 104.8 bits (260), Expect = 2.100e-19
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0
Query:   57 GKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFL 128
            G +AKFGIFSPAV   KILLG++ L+++RGK ISLHSQAI EFC FVGA  KT+  L+KKAK NGD LGFL
Sbjct:    2 GSMAKFGIFSPAVYAGKILLGDKGLDQIRGKGISLHSQAINEFCIFVGASTKTKGLLVKKAKNNGDTLGFL 72          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: CEL94740.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 103.6 bits (257), Expect = 4.700e-19
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 0
Query:   33 RTALYSSPSIQPQQRQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFL 128
            R A   +PS      +  +  +  GK A FG+FSPAV++ K++LG+++LNKVRGK I+LHSQ IT+FC F GAQ   R RLIKKAKT GD LG L
Sbjct:   59 RPAAVEAPSEPEAAAEAPKKAVKKGKQATFGLFSPAVLIGKLVLGDKQLNKVRGKIIALHSQVITQFCDFTGAQRSMRQRLIKKAKTTGDRLGML 153          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: XP_002178708.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49406.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 101.7 bits (252), Expect = 1.800e-18
Identity = 63/126 (50.00%), Postives = 78/126 (61.90%), Query Frame = 0
Query:   13 LLALFALL-SSSHAFFVAAPA----------RTALYSSPSIQPQQRQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFL 128
            +L  FALL +++ AF VA  A          RT++  +P     +   G   M  G  AKFG+FSPAV  AK++LG+ KLNK+RGKAISLHSQ I EFC + GA    R +LIKKAK NGD LGFL
Sbjct:    7 ILVTFALLIATAAAFRVAGGATGGSSFVLSRRTSIAVAPQSSTTRAAAGVSNMRMGSQAKFGVFSPAVYAAKVVLGQDKLNKIRGKAISLHSQYIGEFCEWAGAY-HLRTKLIKKAKVNGDTLGFL 131          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: XP_002289457.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92994.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 96.7 bits (239), Expect = 5.700e-17
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 0
Query:   12 LLLALFALLSSSHAFF-------VAAPARTALYSSPSIQPQQRQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFL 128
            L+L + AL +SS   F       V+  +   +   P       +  + ++  G  AKFGIFSPAV VAKI LG  +LNK+RGKAISLHSQ I EFC + GA    R RLIKKAKTNGD LGFL
Sbjct:    7 LVLVVVALAASSVQGFAPTSLGGVSGGSNFVVSQRPRAAAPVARTSKTSLQMGSQAKFGIFSPAVYVAKIGLGNDRLNKIRGKAISLHSQYIGEFCEWAGAY-HLRTRLIKKAKTNGDTLGFL 128          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: OEU15757.1 (hypothetical protein FRACYDRAFT_209197 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.9 bits (237), Expect = 9.700e-17
Identity = 62/128 (48.44%), Postives = 75/128 (58.59%), Query Frame = 0
Query:   13 LLALFAL-LSSSHAFFVAAPARTALYSSPSIQPQQRQQGRMTM------------MGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFL 128
            +L LFAL LS  +AF +     T   S  S    QR     T             MGGK +KFG+FSPAV  AK++LG  +LNK+RGK IS+HSQ I EFC ++GA    R +LIKKAK NGD LGFL
Sbjct:    7 VLVLFALALSVVNAFTIT----TGSQSGSSFLISQRSSATATTAAPVRTGVSSLHMGGKKSKFGVFSPAVYGAKVVLGTARLNKIRGKGISIHSQTIGEFCQWIGAY-HLRTKLIKKAKVNGDILGFL 129          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: NP_001151447.1 (pgr5 protein [Zea mays] >ACG42908.1 PGR5 [Zea mays] >ACR38643.1 unknown [Zea mays] >ONM03796.1 Protein PROTON GRADIENT REGULATION 5 chloroplastic [Zea mays])

HSP 1 Score: 94.4 bits (233), Expect = 2.800e-16
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 0
Query:   35 ALYSSPSIQPQQRQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFL 128
            AL  S S++P+ R +    MMG   A  G+F+P VVVA+ ++G ++ N++RGKAI+LHSQ ITEFC  +GA  K R  LI+ AK NG+ LGFL
Sbjct:   32 ALAMSVSVRPRCRARSPARMMGNVNAGKGLFAPLVVVARNIIGRKRFNQLRGKAIALHSQVITEFCKTIGADSKQRQGLIRLAKKNGEKLGFL 124          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: XP_024521357.1 (uncharacterized protein LOC112342936 [Selaginella moellendorffii])

HSP 1 Score: 90.1 bits (222), Expect = 5.300e-15
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   38 SSPSIQPQQRQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFL 128
            SS S + + R+   + + G K    GIF+P VVVA+ +LG ++ N++RGK I+LHSQ ITEFC  VGA  K R  LI+ AK NG+ LGFL
Sbjct:   74 SSSSARQRGRRSSLVVVAGSKEGSSGIFAPLVVVARSVLGAKQFNQLRGKGIALHSQVITEFCKSVGADNKVRQGLIRIAKKNGEKLGFL 163          
BLAST of NO19G00390 vs. NCBI_GenBank
Match: XP_005703445.1 (electron carrier protein (proton gradient regulation 5) isoform 1 [Galdieria sulphuraria] >EME26925.1 electron carrier protein (proton gradient regulation 5) isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 89.7 bits (221), Expect = 7.000e-15
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   48 QQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFL 128
            +Q  + +  GKV+ FG F+P V V + +LG+ + NK+RG+AI+LHSQ ITEFC +VG   + R  LI+ AKTNG  LGFL
Sbjct:   49 KQSAIEVYMGKVSNFGPFTPVVYVTRWVLGKDRFNKIRGRAIALHSQVITEFCKYVGMDARLRQGLIRLAKTNGSKLGFL 128          
The following BLAST results are available for this feature:
BLAST of NO19G00390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23526.11.100e-3364.34hypothetical protein Naga_100940g3 [Nannochloropsi... [more]
CBJ33332.12.600e-2246.53proton gradient regulation [Ectocarpus siliculosus... [more]
XP_009038064.12.100e-1969.01hypothetical protein AURANDRAFT_27980 [Aureococcus... [more]
CEL94740.14.700e-1953.68unnamed protein product [Vitrella brassicaformis C... [more]
XP_002178708.11.800e-1850.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002289457.15.700e-1749.59predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU15757.19.700e-1748.44hypothetical protein FRACYDRAFT_209197 [Fragilario... [more]
NP_001151447.12.800e-1650.54pgr5 protein [Zea mays] >ACG42908.1 PGR5 [Zea mays... [more]
XP_024521357.15.300e-1550.00uncharacterized protein LOC112342936 [Selaginella ... [more]
XP_005703445.17.000e-1551.25electron carrier protein (proton gradient regulati... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00390.1NO19G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G00390.2NO19G00390.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607015gene_9746Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100940g3gene6925Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00390.1NO19G00390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G00390.2NO19G00390.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00390 ID=NO19G00390|Name=NO19G00390|organism=Nannochloropsis oceanica|type=gene|length=1668bp
AGAACGTGGAATTGACTCACGATCTAGTTTTGATCTTTGGCCGTTGCCCC
CTGCTCTAGGCACACGCTGCCTCCTGTGTGTCTGTCTGCCCTGTTCATGC
GCACGCAATGCCGTGCAATATCTAACACGCACAAGTACAGACGTGAAAGG
AGTGAGTGGCAGCCGTCTACTGCCACGCATTCGGACTCTGCCTCTCGTTG
CACGGTGTGCGTTGTTGTTTCTCCCATCATCATCTCATCCCTCTCCATGT
GTTGCCCTCTTCGTCCTATCCGAACCCACAGCACCACAAGATGGCACGCG
GCCTCTTCACCTGGGGTGCCCTCCTCCTCCTAGCCCTCTTCGCTCTCCTC
TCCTCCTCCCATGCGTTTTTTGTGGCGGCGCCCGCCCGTACCGCGCTCTA
CTCCTCTCCCTCAATCCAACCACAACAACGGCAGCAAGGACGAATGACCA
TGATGGGTGGGAAGGTGGCAAAATTTGGGATTTTCTCCCCTGCAGTCGTC
GTGGCCAAGATCTTGCTAGGCGAGCAGAAGCTGAACAAGgtgctcgacgg
agaaggaaggacgaaggggaaggatggagcatgttctggaaagagagcgt
gggaatgcgataagtttctttcagagaggtcatactacactctctgacaa
acgagcggcaaggaatgccttttaaatgggacggtattcccctccgtgac
gacggactgtgctcacctccctcgctccctccctctcttcccccccccgc
cccctttcgttgtaccccagGTCCGCGGCAAGGCCATTTCCCTCCACTCC
CAAGCCATCACCGAGTTCTGCTACTTTGTGGGCGCACAAGGTAAAACCCG
CAACCGTCTCATCAAGAAGGCGAAGACCAATGGCGACGATCTTGGCTTCT
TGTGGTAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGGGAGGGAG
GTGAGTAGCTTTGTCCACTCTATCCTGTTTTTCTACCCCTAGAGGCTACA
AGCTCTTGAATTGACGATTGAGAGGGTGATGTAGGGATGAAGGGAGGGAA
TGAGGCAAAGTTGATGGGTCTTACCCCACCCAGGCTTATCAAGGATTTAA
GGGTGAAAGGGAGAGAGGAATAGAAGCAGCAGCGTCAGCAGCAGCAGCAG
CAGAAGAAACATTAAGACCTGTAAACTGGGATCATTAAATCATTTTCTCA
TTCGGTCGGTCACAGATAGACTCACACGTTGCACGCCCCTGGAGTACCTC
TACTCGTTTTTGTGTTCCTGTGCCAGGCCTGAGCCTGAGCTTAAGCTTGC
TCTTCTTCGTGTTCTTATTCTAGTATTCTAGTTCTTTTCCTTCTTTGTCT
TTGCATTTCACTCGTTCTTCTTCTTCCTCTTCTTCTTCTTCCTTTTCTTT
TTCTTCTTGTTGTCGCCTGTTTATGGTGTCGTTCTTTTCGTCCTTCTCCG
CGCTCTTCGCTTTTGTCGGTGGTTTCCGTTATGCCCTTGGAGAGTATGCG
TCTGTGCTCTCAACATGCGTGAGGATCCTTCCTTCCTTCCATCATTTCCT
CCCTCCTCCTCCCTCTTCTCCTTCCCTTTTCTCGATCCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGTTCCTCCTCTTTGGCACCAAGCAC
CACGCCTTCCTCCATCCA
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protein sequence of NO19G00390.1

>NO19G00390.1-protein ID=NO19G00390.1-protein|Name=NO19G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MARGLFTWGALLLLALFALLSSSHAFFVAAPARTALYSSPSIQPQQRQQG
RMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFC
YFVGAQGKTRNRLIKKAKTNGDDLGFLW*
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protein sequence of NO19G00390.2

>NO19G00390.2-protein ID=NO19G00390.2-protein|Name=NO19G00390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MARGLFTWGALLLLALFALLSSSHAFFVAAPARTALYSSPSIQPQQRQQG
RMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFC
YFVGAQGKTRNRLIKKAKTNGDDLGFLW*
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Synonyms
Publications