|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr19 | genome | chr19:157560..159227 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G00390.2 vs.
Match: EWM23526.1 (hypothetical protein Naga_100940g3 [Nannochloropsis gaditana]) HSP 1 Score: 181.0 bits (458), Expect = 2.300e-42 Identity = 95/129 (73.64%), Postives = 107/129 (82.95%), Query Frame = 0
Query: 1 MARGLFTWGALLLLALFALLSSSHAFFVAAPART-ALYSSPSIQPQQRQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFLW 129
MAR W LL+ L +L++SSHAFF+AAP R A +P P+ RQQG M+MMGGKVAKFG FSPAV+VAKI+LGE+KLNKVRGKAISLHSQAITEFC FVGAQGKTRNRLIKKAKTNGD+LGFLW
Sbjct: 1 MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G00390.2 ID=NO19G00390.2|Name=NO19G00390.2|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
AGAACGTGGAATTGACTCACGATCTAGTTTTGATCTTTGGCCGTTGCCCC
CTGCTCTAGGCACACGCTGCCTCCTGTGTGTCTGTCTGCCCTGTTCATGC
GCACGCAATGCCGTGCAATATCTAACACGCACAAGTACAGACGTGAAAGG
AGTGAGTGGCAGCCGTCTACTGCCACGCATTCGGACTCTGCCTCTCGTTG
CACGGTGTGCGTTGTTGTTTCTCCCATCATCATCTCATCCCTCTCCATGT
GTTGCCCTCTTCGTCCTATCCGAACCCACAGCACCACAAGATGGCACGCG
GCCTCTTCACCTGGGGTGCCCTCCTCCTCCTAGCCCTCTTCGCTCTCCTC
TCCTCCTCCCATGCGTTTTTTGTGGCGGCGCCCGCCCGTACCGCGCTCTA
CTCCTCTCCCTCAATCCAACCACAACAACGGCAGCAAGGACGAATGACCA
TGATGGGTGGGAAGGTGGCAAAATTTGGGATTTTCTCCCCTGCAGTCGTC
GTGGCCAAGATCTTGCTAGGCGAGCAGAAGCTGAACAAGGTCCGCGGCAA
GGCCATTTCCCTCCACTCCCAAGCCATCACCGAGTTCTGCTACTTTGTGG
GCGCACAAGGTAAAACCCGCAACCGTCTCATCAAGAAGGCGAAGACCAAT
GGCGACGATCTTGGCTTCTTGTGGTAGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAAGAAGGGAGGGAGGTGAGTAGCTTTGTCCACTCTATCCTGTTTT
TCTACCCCTAGAGGCTACAAGCTCTTGAATTGACGATTGAGAGGGTGATG
TAGGGATGAAGGGAGGGAATGAGGCAAAGTTGATGGGTCTTACCCCACCC
AGGCTTATCAAGGATTTAAGGGTGAAAGGGAGAGAGGAATAGAAGCAGCA
GCGTCAGCAGCAGCAGCAGCAGAAGAAACATTAAGACCTGTAAACTGGGA
TCATTAAATCATTTTCTCATTCGGTCGGTCACAGATAGACTCACACGTTG
CACGCCCCTGGAGTACCTCTACTCGTTTTTGTGTTCCTGTGCCAGGCCTG
AGCCTGAGCTTAAGCTTGCTCTTCTTCGTGTTCTTATTCTAGTATTCTAG
TTCTTTTCCTTCTTTGTCTTTGCATTTCACTCGTTCTTCTTCTTCCTCTT
CTTCTTCTTCCTTTTCTTTTTCTTCTTGTTGTCGCCTGTTTATGGTGTCG
TTCTTTTCGTCCTTCTCCGCGCTCTTCGCTTTTGTCGGTGGTTTCCGTTA
TGCCCTTGGAGAGTATGCGTCTGTGCTCTCAACATGCGTGAGGATCCTTC
CTTCCTTCCATCATTTCCTCCCTCCTCCTCCCTCTTCTCCTTCCCTTTTC
TCGATCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCCT
CCTCTTTGGCACCAAGCACCACGCCTTCCTCCATCCA back to topprotein sequence of NO19G00390.2 >NO19G00390.2-protein ID=NO19G00390.2-protein|Name=NO19G00390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MARGLFTWGALLLLALFALLSSSHAFFVAAPARTALYSSPSIQPQQRQQG
RMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFC
YFVGAQGKTRNRLIKKAKTNGDDLGFLW* back to topmRNA from alignment at chr19:157560..159227+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G00390.2 ID=NO19G00390.2|Name=NO19G00390.2|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp|location=Sequence derived from alignment at chr19:157560..159227+ (Nannochloropsis oceanica)
AGAACGTGGAATTGACTCACGATCTAGTTTTGATCTTTGGCCGTTGCCCC
CTGCTCTAGGCACACGCTGCCTCCTGTGTGTCTGTCTGCCCTGTTCATGC
GCACGCAATGCCGTGCAATATCTAACACGCACAAGTACAGACGTGAAAGG
AGTGAGTGGCAGCCGTCTACTGCCACGCATTCGGACTCTGCCTCTCGTTG
CACGGTGTGCGTTGTTGTTTCTCCCATCATCATCTCATCCCTCTCCATGT
GTTGCCCTCTTCGTCCTATCCGAACCCACAGCACCACAAGATGGCACGCG
GCCTCTTCACCTGGGGTGCCCTCCTCCTCCTAGCCCTCTTCGCTCTCCTC
TCCTCCTCCCATGCGTTTTTTGTGGCGGCGCCCGCCCGTACCGCGCTCTA
CTCCTCTCCCTCAATCCAACCACAACAACGGCAGCAAGGACGAATGACCA
TGATGGGTGGGAAGGTGGCAAAATTTGGGATTTTCTCCCCTGCAGTCGTC
GTGGCCAAGATCTTGCTAGGCGAGCAGAAGCTGAACAAGGTGCTCGACGG
AGAAGGAAGGACGAAGGGGAAGGATGGAGCATGTTCTGGAAAGAGAGCGT
GGGAATGCGATAAGTTTCTTTCAGAGAGGTCATACTACACTCTCTGACAA
ACGAGCGGCAAGGAATGCCTTTTAAATGGGACGGTATTCCCCTCCGTGAC
GACGGACTGTGCTCACCTCCCTCGCTCCCTCCCTCTCTTCCCCCCCCCGC
CCCCTTTCGTTGTACCCCAGGTCCGCGGCAAGGCCATTTCCCTCCACTCC
CAAGCCATCACCGAGTTCTGCTACTTTGTGGGCGCACAAGGTAAAACCCG
CAACCGTCTCATCAAGAAGGCGAAGACCAATGGCGACGATCTTGGCTTCT
TGTGGTAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGGGAGGGAG
GTGAGTAGCTTTGTCCACTCTATCCTGTTTTTCTACCCCTAGAGGCTACA
AGCTCTTGAATTGACGATTGAGAGGGTGATGTAGGGATGAAGGGAGGGAA
TGAGGCAAAGTTGATGGGTCTTACCCCACCCAGGCTTATCAAGGATTTAA
GGGTGAAAGGGAGAGAGGAATAGAAGCAGCAGCGTCAGCAGCAGCAGCAG
CAGAAGAAACATTAAGACCTGTAAACTGGGATCATTAAATCATTTTCTCA
TTCGGTCGGTCACAGATAGACTCACACGTTGCACGCCCCTGGAGTACCTC
TACTCGTTTTTGTGTTCCTGTGCCAGGCCTGAGCCTGAGCTTAAGCTTGC
TCTTCTTCGTGTTCTTATTCTAGTATTCTAGTTCTTTTCCTTCTTTGTCT
TTGCATTTCACTCGTTCTTCTTCTTCCTCTTCTTCTTCTTCCTTTTCTTT
TTCTTCTTGTTGTCGCCTGTTTATGGTGTCGTTCTTTTCGTCCTTCTCCG
CGCTCTTCGCTTTTGTCGGTGGTTTCCGTTATGCCCTTGGAGAGTATGCG
TCTGTGCTCTCAACATGCGTGAGGATCCTTCCTTCCTTCCATCATTTCCT
CCCTCCTCCTCCCTCTTCTCCTTCCCTTTTCTCGATCCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGTTCCTCCTCTTTGGCACCAAGCAC
CACGCCTTCCTCCATCCA back to topCoding sequence (CDS) from alignment at chr19:157560..159227+ >NO19G00390.2 ID=NO19G00390.2|Name=NO19G00390.2|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at chr19:157560..159227+ (Nannochloropsis oceanica)
ATGGCACGCGGCCTCTTCACCTGGGGTGCCCTCCTCCTCCTAGCCCTCTT
CGCTCTCCTCTCCTCCTCCCATGCGTTTTTTGTGGCGGCGCCCGCCCGTA
CCGCGCTCTACTCCTCTCCCTCAATCCAACCACAACAACGGCAGCAAGGA
CGAATGACCATGATGGGTGGGAAGGTGGCAAAATTTGGGATTTTCTCCCC
TGCAGTCGTCGTGGCCAAGATCTTGCTAGGCGAGCAGAAGCTGAACAAGG
TCCGCGGCAAGGCCATTTCCCTCCACTCCCAAGCCATCACCGAGTTCTGC
TACTTTGTGGGCGCACAAGGTAAAACCCGCAACCGTCTCATCAAGAAGGC
GAAGACCAATGGCGACGATCTTGGCTTCTTGTGGTAG back to top
|