NO19G00390.1, NO19G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00390.1
Unique NameNO19G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1165
Alignment locationchr19:153214..159227 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:153214..159227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G00390.1 vs.
Match: EWM23526.1 (hypothetical protein Naga_100940g3 [Nannochloropsis gaditana])

HSP 1 Score: 181.0 bits (458), Expect = 2.300e-42
Identity = 95/129 (73.64%), Postives = 107/129 (82.95%), Query Frame = 0 
Query:    1 MARGLFTWGALLLLALFALLSSSHAFFVAAPART-ALYSSPSIQPQQRQQGRMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFCYFVGAQGKTRNRLIKKAKTNGDDLGFLW 129
            MAR    W  LL+  L +L++SSHAFF+AAP R  A   +P   P+ RQQG M+MMGGKVAKFG FSPAV+VAKI+LGE+KLNKVRGKAISLHSQAITEFC FVGAQGKTRNRLIKKAKTNGD+LGFLW
Sbjct:    1 MARSPCLWSGLLVALLLSLMASSHAFFMAAPLRPPASTPAPYGLPRGRQQGAMSMMGGKVAKFGFFSPAVIVAKIVLGEKKLNKVRGKAISLHSQAITEFCTFVGAQGKTRNRLIKKAKTNGDELGFLW 129
The following BLAST results are available for this feature:
BLAST of NO19G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23526.12.300e-4273.64hypothetical protein Naga_100940g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00390NO19G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00390.1NO19G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00390.1.cds1NO19G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00390.1.cds2NO19G00390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00390.1 ID=NO19G00390.1|Name=NO19G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp
AAACAAAAGCACCACAAGATGGCACGCGGCCTCTTCACCTGGGGTGCCCT
CCTCCTCCTAGCCCTCTTCGCTCTCCTCTCCTCCTCCCATGCGTTTTTTG
TGGCGGCGCCCGCCCGTACCGCGCTCTACTCCTCTCCCTCAATCCAACCA
CAACAACGGCAGCAAGGACGAATGACCATGATGGGTGGGAAGGTGGCAAA
ATTTGGGATTTTCTCCCCTGCAGTCGTCGTGGCCAAGATCTTGCTAGGCG
AGCAGAAGCTGAACAAGGTCCGCGGCAAGGCCATTTCCCTCCACTCCCAA
GCCATCACCGAGTTCTGCTACTTTGTGGGCGCACAAGGTAAAACCCGCAA
CCGTCTCATCAAGAAGGCGAAGACCAATGGCGACGATCTTGGCTTCTTGT
GGTAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGGGAGGGAGGTG
AGTAGCTTTGTCCACTCTATCCTGTTTTTCTACCCCTAGAGGCTACAAGC
TCTTGAATTGACGATTGAGAGGGTGATGTAGGGATGAAGGGAGGGAATGA
GGCAAAGTTGATGGGTCTTACCCCACCCAGGCTTATCAAGGATTTAAGGG
TGAAAGGGAGAGAGGAATAGAAGCAGCAGCGTCAGCAGCAGCAGCAGCAG
AAGAAACATTAAGACCTGTAAACTGGGATCATTAAATCATTTTCTCATTC
GGTCGGTCACAGATAGACTCACACGTTGCACGCCCCTGGAGTACCTCTAC
TCGTTTTTGTGTTCCTGTGCCAGGCCTGAGCCTGAGCTTAAGCTTGCTCT
TCTTCGTGTTCTTATTCTAGTATTCTAGTTCTTTTCCTTCTTTGTCTTTG
CATTTCACTCGTTCTTCTTCTTCCTCTTCTTCTTCTTCCTTTTCTTTTTC
TTCTTGTTGTCGCCTGTTTATGGTGTCGTTCTTTTCGTCCTTCTCCGCGC
TCTTCGCTTTTGTCGGTGGTTTCCGTTATGCCCTTGGAGAGTATGCGTCT
GTGCTCTCAACATGCGTGAGGATCCTTCCTTCCTTCCATCATTTCCTCCC
TCCTCCTCCCTCTTCTCCTTCCCTTTTCTCGATCCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGTTCCTCCTCTTTGGCACCAAGCACCAC
GCCTTCCTCCATCCA
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protein sequence of NO19G00390.1

>NO19G00390.1-protein ID=NO19G00390.1-protein|Name=NO19G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MARGLFTWGALLLLALFALLSSSHAFFVAAPARTALYSSPSIQPQQRQQG
RMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFC
YFVGAQGKTRNRLIKKAKTNGDDLGFLW*
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mRNA from alignment at chr19:153214..159227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00390.1 ID=NO19G00390.1|Name=NO19G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=6014bp|location=Sequence derived from alignment at chr19:153214..159227+ (Nannochloropsis oceanica)
AAACAAAAGGTCGGCCATTCGGGATCTTCACATCCTCAATCACCTCGATC
GATTGCTCCTTCCCTCCCTTCCTCCCGCCCTCCTGTCTTCCCTTCTCTAC
CTGCTCCTCCCCCAGCCCGTCAAGACGCTTGATGAGGGAACGAAGGCTGT
TGGCATGGGCCACCACCAAGGGCCGTTCGCCTCGTCGGATGGAGGGAAGC
ACTTCCTCTTCCCAGTAGACCATGACGCGTTCCGCGCACATTTCGAGGCT
TTCGCCCTTGGGCAAGACGGAGTCGGCCACGTCTTTGTAGCGCCTGATTG
ATTAATTGATTGATTGCTTTGATTAAAGTCGGGGCTTTTGAAAACCATGG
TGGATTTGACTTTACATCGAGCGAGATGGAGGGAGGGAGGGAGGGAGGGA
AGAAAGGAAGGAGGGAGGGAAGGACACCTGCCGGCCTACCTGTCTCCTCG
AATGAGGGGGTAGTGGGGGTGGGAAGGCGGCATGTCTGGAGGTTTTCCCC
TCCAGCTTCGACGCCACAGCTTTACGATGGGTCCGAGTTTCTTTTCTGAC
TCTTCTTTGGACAGACCTTGCATGGCACCTACAGCAGGAGGGAGGGAAGG
AGGGAGGGAGGGAGGGAATGAGGGGGGAAAAAAAAAAGAAGGGGGGGAAG
GTAGATTTTTAAAAGAGAAGGAGGGAGGGAGGGAGGAGGGATCGGAGGGA
GGGAGGGAAGGAAGGAAGGAGGGAGGGAGGGAATACGTACCGTAGTGTCG
CTCATTCAAGCGCCAGTGCATTTTGATGGGAATGAAGGTGTGATCACAGC
CATCGAGACAGCACCACAGGCTCTTCACGGCGCGCTTCAGCACCGAGGTG
TAGGCGATGTCGAAGGTAAAGCCCCGCGAAGCAAGGAGCATACCTGCTTC
CTTGCACTCGTCTTCTCTGAGGGAGGGAAGGAAGGAGGGAAGGAAGGAGG
GAAGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGT
CAGTCTGGTGCAGCACATTCAGCAAGGTCACCTAGCAAGACGAAGGAAGG
CATTGAGGGAGCGAGGGAAGGAGGGAGGGAAGGAGGGATGGATGGAAGCA
AGTGACATACCCTTTCTTGTTCACGTCCACGTCGCACCAGCCCGTGAAAA
TTTCCTGTCGATTAAAATCAGACTGACCATGACGGACGAACACGACAGGG
GTCGGGGGCCGCCGGGGAGGCGATGGAGAGGAAGATGAAGAGGAGGAAAG
GGGTGGATTGGAGGAAGAGAGGGGAGAGAAAGATAAAACGGTTGTAGAGC
TGCTGCTGCTGCTGGTGATGGTTCTGCAACTGGTGCTGCAACTGCTGCTG
CTGAAGGTTGTCCGTGACGCGGAGAAGGAGGAGAAAGGATGCGTTTGACT
GGGGCTTGCCTGCCGCCAAGAGGATAGGGAGGGATTAGGAAGGAAGGCAG
CACACGTGGAGAAGAAGGAGGCACCGTTAGTAGCAGCACTGGCCATGGCG
GCGGCAGCGGATGGGAAAATTATGAAGGTGGGGAGGAGCCAGTAGTACGA
GGAAGAGGAGGTTGAGGAGGAGAAGGAGGAGGGTGGCCGTCTTCTCCTTC
TGCCTGAGGGCTTGGCTGCCGGGTAGGTCATGCCCCTAAGCGTCGTCGTG
CTTGTCGTGGTGGACTGTGTGTGAATGTCAGAGAAGGCAAGTGGATTTAA
AAGCAAAGAATGTCTCATCACTTCAAGCTTGCATCCCATTCCTCTGCCTG
CCGAATACATTCCGCCCGTAATTCCGCCATAAACCTACCACCAAGAGGAC
CAGACACATGACACGGCGGGAAATGGGGCGAAAGGTTTGCCTCGTGGCGA
CAAGCACCATACACTTTTATGTGGAACAGGCTAGGGACGGGAAACGTAGG
AAGGAATGAGGCGACGCAGTTGCAGTCCTGGGAGGGGTTGCAAACGAGCG
CGTTACTGGTCGGTTACTCACGAGACGCTTTCTCTGGCCGTCTTCTTCCC
TAGGAGAGTGATCTGTTGACCGTCCGTGCCTGGTTTTGAGTGTGTGTTTG
TGCAGGGCCACACGTAAGAATGGGATTCGTGTGTGCCTTGAGGAAAGAAC
GAAGGGAGCATCTGATGACTTGAAGAAATAGTTAAAGCGACATGGCTTCG
TCCACGAAAGTTATGGACGCCCTTTTTCCTGTTTCATCGTTATGTACTCT
CTATCTTTAAACACCTCCATACTACGAGACAAACTTATGTTCTCGACTTT
TCTCTTTCGAAAACAGGAATGACGCTCATTGCCCTTGCTTCTACAAAGAT
GCGACGCAATTTGTCTATGTAATCACGATACGTGAAGGCAAGTATTCACA
TCTCTTACTTTGGGAGATGAATTCCTATACTTTGTCTGATTGCGCATCTT
GTATAGCCATGTCAATTAGCATTGAGATCCTCCTATCAAACAGTGATAGA
TCAAGCCACAGAGCTGGCCACCCTGGAAGGAAATGTCATGGATGAAAAAG
AGTTGGAATGTGGAACGACTTTCGTGGAGACACGAACCATGATGCATTGG
AGATCGATTCGCTGTCCCGGTGTCACCGGTGTCACCGTGCTCTTTTACCC
GTCGCATTTGGGCATCTTGGACTGCGCCACAAACCCTACAGTCCCCCGAA
ATATTGCCTGGTCGTAAACTCCCCATTCCCATCTTTCTCGTCCCCTTCAC
CCCGTGCGCCACCTCTATGTTTGTCGCACTTCACTCGCCTTCTCCCGCCA
ATCCCTCCCAAAGTTAGAGAGAGAGGTGTGGGAGCCTGGCGTCGCCTTTG
ATCTCCGTATGTACAGTATTTCAAGATTCCTCCCCTCCCTCCCTCCCCCT
CGCCCTTCACTCCATTCTCCTCAGTCCTGGCCCCACAACGATGCGTCCTT
CGGAAACAGGAAACCCGGTTGGTCCAAGGGCAAGACCAAATTCCTCGATC
GAAAGGACGTAGGCTTAAGGCCTACGGAAGGACGGAGCCAGCCCGGACCG
AAGAGAGCGTTAGCACTAAGCATCCCGATGGCGGCGAGGGCGAGGAGGAG
AGTGAGGGGATTCACGCCTAAAATGGTAATAATTGCTTCTTTGGGGGAGA
GACCGGAGCCGCCGAAGCCTTCGCTATCGGTGCTGTCAGAAGGGGGCTGT
GCGGGGTGGGGGGAAAAGGAGGGGGGCAGGGAAGGAAGGAAAGAGGGTAA
TGGGATAAGGAGATGGAGAAAAAGGAGGAAAAGGAGACGGGTAAGCTTTG
TTATCGCACGCGACAATCAGGCTGATCTTATTCCAAGTAAAGTAGAAAGT
ATGCCTGCGAGGCAAATCCGTCTCTATCAGGGGAAATTGTGGAAGCCCAA
GCATACAGGTTAAGAAACGGTGAGATTGATCAACGTACCACGTCGTCGCC
ACCATCGCCCTCTCCTTGCCCCCGGCCATCAGGCGAGAGAGGGGACCGTC
AGAAAGGCGAGCAGGGGGGCGACAAAAGCTTGGGATATAAATGCTGCTGC
TGCTGCTGCTGCTGCTGCTGTGACAGGTGCGATATAGGAGTATGGGTCTT
GCCGTGTAGGGTCGAGTGGCAGACTGAGGTGAAAGATTAAAGGCCTTGAC
ACCAACGATGCCGAGACAGCCACCACGACAGTCACTGTTTAAAAGCAGCA
GGACGACGAGTGGAAGTAGAAGTAGATTATAAGGCATGAAGAGGGGGATG
GTTATTGTTAGCTTTCTTGATAAAGTCGGTGAAGAGACAGCGGCAGATGC
GGATGGGAGCCGGTGTTGCTCTCGAATAAAGGGGACACATGATGATGGCC
ACGCGCTGCACACTTTCGCACGCTCTTTCTCCACGGTGAGCATCCCAGAC
TGGGGCGTGACAGTGCTTCCTGGACCACCTACTTTGAAGTGCGCATCTGC
ACCATTTTGCGGTGATGCAAGGGCCCCGCTGTTTACTGCATTGACGGGTT
CTATGAAGATGGTGGTGTTAGCCTTCCTACCCTGCTGACATGGACGAGGC
CGTCTTCTGTTGCTGCCGCTTTCAAGCATGGCTGTACCTAAAAGGACGTG
TACGAGGCATAAGAATCAGGGCGAGCAAGTCTGTAGACTGCGTAGGAGGG
ACTGATGGGGGTGGAGGTGCTAATTTTTCAATCCTGCAGCTGTGGACAAG
GCCACAAGGCGTTCAAGGCGATTAGCCTGACACTAATGAGAGTGTCGGGT
CATGGGGAGACCTCTTCGGCTGGCAAGCAGTAGCGACGATATGATCAAAG
ACTACACACGTAGTAATTCTGAAAAAGGAAAGGGAAAGGGTTAGATGATG
CAATAGGAAAGCATGACCCAAAAGAAAGTGTTCTCAACCTCGACGCAGAA
CGTGGAATTGACTCACGATCTAGTTTTGATCTTTGGCCGTTGCCCCCTGC
TCTAGGCACACGCTGCCTCCTGTGTGTCTGTCTGCCCTGTTCATGCGCAC
GCAATGCCGTGCAATATCTAACACGCACAAGTACAGACGTGAAAGGAGTG
AGTGGCAGCCGTCTACTGCCACGCATTCGGACTCTGCCTCTCGTTGCACG
GTGTGCGTTGTTGTTTCTCCCATCATCATCTCATCCCTCTCCATGTGTTG
CCCTCTTCGTCCTATCCGAACCCACAGCACCACAAGATGGCACGCGGCCT
CTTCACCTGGGGTGCCCTCCTCCTCCTAGCCCTCTTCGCTCTCCTCTCCT
CCTCCCATGCGTTTTTTGTGGCGGCGCCCGCCCGTACCGCGCTCTACTCC
TCTCCCTCAATCCAACCACAACAACGGCAGCAAGGACGAATGACCATGAT
GGGTGGGAAGGTGGCAAAATTTGGGATTTTCTCCCCTGCAGTCGTCGTGG
CCAAGATCTTGCTAGGCGAGCAGAAGCTGAACAAGGTGCTCGACGGAGAA
GGAAGGACGAAGGGGAAGGATGGAGCATGTTCTGGAAAGAGAGCGTGGGA
ATGCGATAAGTTTCTTTCAGAGAGGTCATACTACACTCTCTGACAAACGA
GCGGCAAGGAATGCCTTTTAAATGGGACGGTATTCCCCTCCGTGACGACG
GACTGTGCTCACCTCCCTCGCTCCCTCCCTCTCTTCCCCCCCCCGCCCCC
TTTCGTTGTACCCCAGGTCCGCGGCAAGGCCATTTCCCTCCACTCCCAAG
CCATCACCGAGTTCTGCTACTTTGTGGGCGCACAAGGTAAAACCCGCAAC
CGTCTCATCAAGAAGGCGAAGACCAATGGCGACGATCTTGGCTTCTTGTG
GTAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGGGAGGGAGGTGA
GTAGCTTTGTCCACTCTATCCTGTTTTTCTACCCCTAGAGGCTACAAGCT
CTTGAATTGACGATTGAGAGGGTGATGTAGGGATGAAGGGAGGGAATGAG
GCAAAGTTGATGGGTCTTACCCCACCCAGGCTTATCAAGGATTTAAGGGT
GAAAGGGAGAGAGGAATAGAAGCAGCAGCGTCAGCAGCAGCAGCAGCAGA
AGAAACATTAAGACCTGTAAACTGGGATCATTAAATCATTTTCTCATTCG
GTCGGTCACAGATAGACTCACACGTTGCACGCCCCTGGAGTACCTCTACT
CGTTTTTGTGTTCCTGTGCCAGGCCTGAGCCTGAGCTTAAGCTTGCTCTT
CTTCGTGTTCTTATTCTAGTATTCTAGTTCTTTTCCTTCTTTGTCTTTGC
ATTTCACTCGTTCTTCTTCTTCCTCTTCTTCTTCTTCCTTTTCTTTTTCT
TCTTGTTGTCGCCTGTTTATGGTGTCGTTCTTTTCGTCCTTCTCCGCGCT
CTTCGCTTTTGTCGGTGGTTTCCGTTATGCCCTTGGAGAGTATGCGTCTG
TGCTCTCAACATGCGTGAGGATCCTTCCTTCCTTCCATCATTTCCTCCCT
CCTCCTCCCTCTTCTCCTTCCCTTTTCTCGATCCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGTTCCTCCTCTTTGGCACCAAGCACCACG
CCTTCCTCCATCCA
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Coding sequence (CDS) from alignment at chr19:153214..159227+

>NO19G00390.1 ID=NO19G00390.1|Name=NO19G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at chr19:153214..159227+ (Nannochloropsis oceanica)
ATGGCACGCGGCCTCTTCACCTGGGGTGCCCTCCTCCTCCTAGCCCTCTT
CGCTCTCCTCTCCTCCTCCCATGCGTTTTTTGTGGCGGCGCCCGCCCGTA
CCGCGCTCTACTCCTCTCCCTCAATCCAACCACAACAACGGCAGCAAGGA
CGAATGACCATGATGGGTGGGAAGGTGGCAAAATTTGGGATTTTCTCCCC
TGCAGTCGTCGTGGCCAAGATCTTGCTAGGCGAGCAGAAGCTGAACAAGG
TCCGCGGCAAGGCCATTTCCCTCCACTCCCAAGCCATCACCGAGTTCTGC
TACTTTGTGGGCGCACAAGGTAAAACCCGCAACCGTCTCATCAAGAAGGC
GAAGACCAATGGCGACGATCTTGGCTTCTTGTGGTAG
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Synonyms
Publications