NO18G01220, NO18G01220 (gene) Nannochloropsis oceanica

Overview
NameNO18G01220
Unique NameNO18G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2993
Alignment locationchr18:423537..426529 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:423537..426529 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036885SWIB_MDM2_dom_sf
IPR003121SWIB_MDM2_domain
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01220.1NO18G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G01220.2NO18G01220.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633646gene_9048Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01220.1NO18G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G01220.2NO18G01220.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01220 ID=NO18G01220|Name=NO18G01220|organism=Nannochloropsis oceanica|type=gene|length=2993bp
AACACAGAGCGAGGCACCGGCATAGTAAGAAAAGCGAGGCGGTGGGCGGT
AAACCCGAGGAGACGACGATGTTGCAGGTGTGTGACAAGGCGGAGAACGA
CTGCTGGAGAGCGGTGAGTACTATATTTAGACAGCTATAATGGTGTTGTG
TGTGCTGCCGACCTCTCCTCCCTCCCCTTCTCAAACAACCCTCCCCGCTA
TGGGCACGAACTCGCATGCACACAGCTTCAAAAGTTTTTCCCTGCGCAGG
CCACTCGGTTGGCGCGCTTGGACAGATTTGAGCGGGACTTGCAGTACAAA
TTGCTGCGTAAACGCAGGTTGAGTACACAGCACATGGGGGGACCAGACGT
TGCCCCTGCTACGCAGACATTGCGCATATACGTCCATCACCGTTTTGTCC
GCCTTATGATTTCTCCTTCGTCGTCCTTGTCGTCAAAAGAAAGCGTAATC
GGCAGCCGTAGTCGTGGTGGTGACGGCAGCGGTAATGATGGGCGAGGAGG
AAGAGATGGAGGAGGGGGGAAAGGAGGGCCGGCGTTGGTGTTGCGAATCG
AGGGAGGGGTACTGCAAGCGGCAGGAAGTGCGGGAGCTGTAGGTAGTGAT
GCTAGACAATTTAGTCCACATTATTACTTTACGGAGTTCTTTGACAGGGT
GACGGTTTTGGGGCTTCAGCAGGAGATTGCCCCTCGCAGAGGTGGTGAGG
CGGTGGCCGGGGAGGGCGGGGAAGAAGGCAATGAAGTTGAGgtaggggtg
gctgagggcaaaaaaaggggggggggagggtagagttgtaaggacacgtc
ggctttgcagctgatggtacgtttttattaagcttactttttcatcaatt
cttcatcccttttctttctctttttcttcgtcccccattagtgtatcgca
cgcgagattacatgctgtatactttcacaagcccccctcacactctattg
cctcgccatccctctcttgctctccaaaaaacccgcgagagtcatcaaat
tttgcccatccccaggcgtcctctcactcccactttcccccctcttcctc
accccaatctccatccaagTGGATCCGGCCTCCCTCGGCCCACGCCCAGG
AAACAGACGGACTGGAGTTCTCCCAGCCCCTCCAAGACCAAGCCGCCCAC
GGCGTCGCCTGTAAAGTCCGCATCCTCCTTGACCGCCGCCAGTACCTGGA
GCAGCAGTACCAGGGGCGACGGCGACTGTCACCCGAGCTGAGCAAGGTGT
TGAGGCTGCGAAAGGAAGAAAGGCAAGAGACAGTGGAAGCAGCGTTGTTG
GGACTGATAGCGACCAGGCAGCTCTTCCTCCATTCCGAGCCGGGGTGGAT
CCAATGCGACGACGACTTGTGGCGACTGTTTGGAAGGGGCTTGGAGGAAG
AGAGGACGGAAGAGGAAAGGGGGGGAGGAGGAGGAGGCGGAGGAAAAGGA
GGAGGAGGCGGAGGAGAAGAAGATGATGGGGAAGGGAGAAGTGGAAAGCT
GCATGTGTCAACATTGGCAAGCAGACTTGAAGgtagggggcggggtgcgc
atgtaggtggggaaaagggttatatagagggttgaccgtgagaaaaagca
taatgaaaaccgaccaactcaccctcccttcgactctcccttcccctctt
ttttaaaactttatttcattctctttctctctcccttcctctctctctac
acgtatgtatacatgttctctatctccctccagAGCATATCTCGCCTCTT
GAGCCCCTGGTCATCGATTACAAAATTCCCCCTTGCCAAGATCTGGACGA
CGACAAGGAAGGAGAAAGGAAGGAGGGAGGGGAGGGTTCACGTTGGCGCG
AGCGCACGAGGATATTTGATGTCCAGGTGGAGACAGGGCCCGGGAGAGAC
GACCTCCAAGCACGCCTCAATGCTCTTGTGGAGGAAAGCCAGCTGCTGCC
GCCACCGCCATCGGCGCCGCAACAACAACGGCAGCAGCAGCGGCTACAGC
AGCGGCTACAGCAGCCACCGAGAAGAGTGAAGGCGAGATCGAGGAGGAAA
AAGGGGCGAAAGAGAAGACGTAGACAAGCGAAAAAGGAAGTCCAGGAACA
AATCCCAGTGAAAAAAGAAGACGAAAACCCGGAGGAGGGAGAGGAGGAGG
AGGGACAGGAAGAGGAAGACGAGGAGGAAGAGGAGGAGGAGGAAGCAGGG
GAGGAAGCTATCCGGAGATTGGACAAGAAGATTGCATATGTGGGGGGGTT
GTTAATGGAGAGGGTAAGGACCTTGGTCCGCCTTAAGGAGCTGGCAAAGA
ACCCAGGACAGGTCCTGGTGCAGATGGAGGAGGAGGAGGCAGTGGCGGCG
ATGCTAGGGGAGGATACATTGCGTTCGGTGGTGGGTGTGCTGAAAAGGAC
AGGGAGTGGGGGTGGCGAGGCGGAGGACAGTGAAGGCAGTGGATCGCCGT
CGTCGCTGTGGCTCAAGTACTTGGACCAGTATTTGCAGCAACCGCAGCAG
CAGCATCCTGCTGCGATACGCTAAGAGGAATCGAGTGGCGACTTGCAAGG
CGGCTCCACCCTGTGCCTCCACCTTTTCCCTCCATCTTCTGCTCCTAGAT
GTAGAGGGAGGCAGGGCCCCGGTGAGTCATAGCAGTCGTGGCGGTGGTTC
AGAAAGCGTTCGGGGGTGGGACTGTTCCGGAAAGGCCTATCAGCACCAAG
GACTTATCCTCCTGGGGGGGGGGAGGGGGCACCTTCCAGTGACTGGATCG
CACTCGCCGACTCCCGACAGAGCAACACCTGCATCGGTAGGGACTTTGCT
CCCTTCAACCGTGGAGTCTACCCGGGCTCGTCACGCGGGAAACAAGACAA
ACTAAACGTGTGACGGCCCTTGTCCCGAGAGGCCGCCTTGTACAAGAAAT
GCTTTTGGGTGATTGCGTCGCCAGCACGCGACGCAAGTAGGAAGGAACAT
CAGCGAGCAAGCAAAAGAACCAGCAAACCAAGAAACATCAAGG
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protein sequence of NO18G01220.1

>NO18G01220.1-protein ID=NO18G01220.1-protein|Name=NO18G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MLQVCDKAENDCWRALQKFFPAQATRLARLDRFERDLQYKLLRKRRLSTQ
HMGGPDVAPATQTLRIYVHHRFVRLMISPSSSLSSKESVIGSRSRGGDGS
GNDGRGGRDGGGGKGGPALVLRIEGGVLQAAGSAGAVGSDARQFSPHYYF
TEFFDRVTVLGLQQEIAPRRGGEAVAGEGGEEGNEVEWIRPPSAHAQETD
GLEFSQPLQDQAAHGVACKVRILLDRRQYLEQQYQGRRRLSPELSKVLRL
RKEERQETVEAALLGLIATRQLFLHSEPGWIQCDDDLWRLFGRGLEEERT
EEERGGGGGGGGKGGGGGGEEDDGEGRSGKLHVSTLASRLEEHISPLEPL
VIDYKIPPCQDLDDDKEGERKEGGEGSRWRERTRIFDVQVETGPGRDDLQ
ARLNALVEESQLLPPPPSAPQQQRQQQRLQQRLQQPPRRVKARSRRKKGR
KRRRRQAKKEVQEQIPVKKEDENPEEGEEEEGQEEEDEEEEEEEEAGEEA
IRRLDKKIAYVGGLLMERVRTLVRLKELAKNPGQVLVQMEEEEAVAAMLG
EDTLRSVVGVLKRTGSGGGEAEDSEGSGSPSSLWLKYLDQYLQQPQQQHP
AAIR*
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protein sequence of NO18G01220.2

>NO18G01220.2-protein ID=NO18G01220.2-protein|Name=NO18G01220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MGGPDVAPATQTLRIYVHHRFVRLMISPSSSLSSKESVIGSRSRGGDGSG
NDGRGGRDGGGGKGGPALVLRIEGGVLQAAGSAGAVGSDARQFSPHYYFT
EFFDRVTVLGLQQEIAPRRGGEAVAGEGGEEGNEVEWIRPPSAHAQETDG
LEFSQPLQDQAAHGVACKVRILLDRRQYLEQQYQGRRRLSPELSKVLRLR
KEERQETVEAALLGLIATRQLFLHSEPGWIQCDDDLWRLFGRGLEEERTE
EERGGGGGGGGKGGGGGGEEDDGEGRSGKLHVSTLASRLEEHISPLEPLV
IDYKIPPCQDLDDDKEGERKEGGEGSRWRERTRIFDVQVETGPGRDDLQA
RLNALVEESQLLPPPPSAPQQQRQQQRLQQRLQQPPRRVKARSRRKKGRK
RRRRQAKKEVQEQIPVKKEDENPEEGEEEEGQEEEDEEEEEEEEAGEEAI
RRLDKKIAYVGGLLMERVRTLVRLKELAKNPGQVLVQMEEEEAVAAMLGE
DTLRSVVGVLKRTGSGGGEAEDSEGSGSPSSLWLKYLDQYLQQPQQQHPA
AIR*
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Synonyms
Publications