NO18G01220.1, NO18G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01220.1
Unique NameNO18G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2352
Alignment locationchr18:423537..426529 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:423537..426529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01220NO18G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01220.1NO18G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01220.1.cds1NO18G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01220.1.cds2NO18G01220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01220.1.cds3NO18G01220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01220.1.cds4NO18G01220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01220.1 ID=NO18G01220.1|Name=NO18G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2352bp
AACACAGAGCGAGGCACCGGCATAGTAAGAAAAGCGAGGCGGTGGGCGGT
AAACCCGAGGAGACGACGATGTTGCAGGTGTGTGACAAGGCGGAGAACGA
CTGCTGGAGAGCGCTTCAAAAGTTTTTCCCTGCGCAGGCCACTCGGTTGG
CGCGCTTGGACAGATTTGAGCGGGACTTGCAGTACAAATTGCTGCGTAAA
CGCAGGTTGAGTACACAGCACATGGGGGGACCAGACGTTGCCCCTGCTAC
GCAGACATTGCGCATATACGTCCATCACCGTTTTGTCCGCCTTATGATTT
CTCCTTCGTCGTCCTTGTCGTCAAAAGAAAGCGTAATCGGCAGCCGTAGT
CGTGGTGGTGACGGCAGCGGTAATGATGGGCGAGGAGGAAGAGATGGAGG
AGGGGGGAAAGGAGGGCCGGCGTTGGTGTTGCGAATCGAGGGAGGGGTAC
TGCAAGCGGCAGGAAGTGCGGGAGCTGTAGGTAGTGATGCTAGACAATTT
AGTCCACATTATTACTTTACGGAGTTCTTTGACAGGGTGACGGTTTTGGG
GCTTCAGCAGGAGATTGCCCCTCGCAGAGGTGGTGAGGCGGTGGCCGGGG
AGGGCGGGGAAGAAGGCAATGAAGTTGAGTGGATCCGGCCTCCCTCGGCC
CACGCCCAGGAAACAGACGGACTGGAGTTCTCCCAGCCCCTCCAAGACCA
AGCCGCCCACGGCGTCGCCTGTAAAGTCCGCATCCTCCTTGACCGCCGCC
AGTACCTGGAGCAGCAGTACCAGGGGCGACGGCGACTGTCACCCGAGCTG
AGCAAGGTGTTGAGGCTGCGAAAGGAAGAAAGGCAAGAGACAGTGGAAGC
AGCGTTGTTGGGACTGATAGCGACCAGGCAGCTCTTCCTCCATTCCGAGC
CGGGGTGGATCCAATGCGACGACGACTTGTGGCGACTGTTTGGAAGGGGC
TTGGAGGAAGAGAGGACGGAAGAGGAAAGGGGGGGAGGAGGAGGAGGCGG
AGGAAAAGGAGGAGGAGGCGGAGGAGAAGAAGATGATGGGGAAGGGAGAA
GTGGAAAGCTGCATGTGTCAACATTGGCAAGCAGACTTGAAGAGCATATC
TCGCCTCTTGAGCCCCTGGTCATCGATTACAAAATTCCCCCTTGCCAAGA
TCTGGACGACGACAAGGAAGGAGAAAGGAAGGAGGGAGGGGAGGGTTCAC
GTTGGCGCGAGCGCACGAGGATATTTGATGTCCAGGTGGAGACAGGGCCC
GGGAGAGACGACCTCCAAGCACGCCTCAATGCTCTTGTGGAGGAAAGCCA
GCTGCTGCCGCCACCGCCATCGGCGCCGCAACAACAACGGCAGCAGCAGC
GGCTACAGCAGCGGCTACAGCAGCCACCGAGAAGAGTGAAGGCGAGATCG
AGGAGGAAAAAGGGGCGAAAGAGAAGACGTAGACAAGCGAAAAAGGAAGT
CCAGGAACAAATCCCAGTGAAAAAAGAAGACGAAAACCCGGAGGAGGGAG
AGGAGGAGGAGGGACAGGAAGAGGAAGACGAGGAGGAAGAGGAGGAGGAG
GAAGCAGGGGAGGAAGCTATCCGGAGATTGGACAAGAAGATTGCATATGT
GGGGGGGTTGTTAATGGAGAGGGTAAGGACCTTGGTCCGCCTTAAGGAGC
TGGCAAAGAACCCAGGACAGGTCCTGGTGCAGATGGAGGAGGAGGAGGCA
GTGGCGGCGATGCTAGGGGAGGATACATTGCGTTCGGTGGTGGGTGTGCT
GAAAAGGACAGGGAGTGGGGGTGGCGAGGCGGAGGACAGTGAAGGCAGTG
GATCGCCGTCGTCGCTGTGGCTCAAGTACTTGGACCAGTATTTGCAGCAA
CCGCAGCAGCAGCATCCTGCTGCGATACGCTAAGAGGAATCGAGTGGCGA
CTTGCAAGGCGGCTCCACCCTGTGCCTCCACCTTTTCCCTCCATCTTCTG
CTCCTAGATGTAGAGGGAGGCAGGGCCCCGGTGAGTCATAGCAGTCGTGG
CGGTGGTTCAGAAAGCGTTCGGGGGTGGGACTGTTCCGGAAAGGCCTATC
AGCACCAAGGACTTATCCTCCTGGGGGGGGGGAGGGGGCACCTTCCAGTG
ACTGGATCGCACTCGCCGACTCCCGACAGAGCAACACCTGCATCGGTAGG
GACTTTGCTCCCTTCAACCGTGGAGTCTACCCGGGCTCGTCACGCGGGAA
ACAAGACAAACTAAACGTGTGACGGCCCTTGTCCCGAGAGGCCGCCTTGT
ACAAGAAATGCTTTTGGGTGATTGCGTCGCCAGCACGCGACGCAAGTAGG
AAGGAACATCAGCGAGCAAGCAAAAGAACCAGCAAACCAAGAAACATCAA
GG
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protein sequence of NO18G01220.1

>NO18G01220.1-protein ID=NO18G01220.1-protein|Name=NO18G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MLQVCDKAENDCWRALQKFFPAQATRLARLDRFERDLQYKLLRKRRLSTQ
HMGGPDVAPATQTLRIYVHHRFVRLMISPSSSLSSKESVIGSRSRGGDGS
GNDGRGGRDGGGGKGGPALVLRIEGGVLQAAGSAGAVGSDARQFSPHYYF
TEFFDRVTVLGLQQEIAPRRGGEAVAGEGGEEGNEVEWIRPPSAHAQETD
GLEFSQPLQDQAAHGVACKVRILLDRRQYLEQQYQGRRRLSPELSKVLRL
RKEERQETVEAALLGLIATRQLFLHSEPGWIQCDDDLWRLFGRGLEEERT
EEERGGGGGGGGKGGGGGGEEDDGEGRSGKLHVSTLASRLEEHISPLEPL
VIDYKIPPCQDLDDDKEGERKEGGEGSRWRERTRIFDVQVETGPGRDDLQ
ARLNALVEESQLLPPPPSAPQQQRQQQRLQQRLQQPPRRVKARSRRKKGR
KRRRRQAKKEVQEQIPVKKEDENPEEGEEEEGQEEEDEEEEEEEEAGEEA
IRRLDKKIAYVGGLLMERVRTLVRLKELAKNPGQVLVQMEEEEAVAAMLG
EDTLRSVVGVLKRTGSGGGEAEDSEGSGSPSSLWLKYLDQYLQQPQQQHP
AAIR*
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mRNA from alignment at chr18:423537..426529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01220.1 ID=NO18G01220.1|Name=NO18G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp|location=Sequence derived from alignment at chr18:423537..426529+ (Nannochloropsis oceanica)
AACACAGAGCGAGGCACCGGCATAGTAAGAAAAGCGAGGCGGTGGGCGGT
AAACCCGAGGAGACGACGATGTTGCAGGTGTGTGACAAGGCGGAGAACGA
CTGCTGGAGAGCGGTGAGTACTATATTTAGACAGCTATAATGGTGTTGTG
TGTGCTGCCGACCTCTCCTCCCTCCCCTTCTCAAACAACCCTCCCCGCTA
TGGGCACGAACTCGCATGCACACAGCTTCAAAAGTTTTTCCCTGCGCAGG
CCACTCGGTTGGCGCGCTTGGACAGATTTGAGCGGGACTTGCAGTACAAA
TTGCTGCGTAAACGCAGGTTGAGTACACAGCACATGGGGGGACCAGACGT
TGCCCCTGCTACGCAGACATTGCGCATATACGTCCATCACCGTTTTGTCC
GCCTTATGATTTCTCCTTCGTCGTCCTTGTCGTCAAAAGAAAGCGTAATC
GGCAGCCGTAGTCGTGGTGGTGACGGCAGCGGTAATGATGGGCGAGGAGG
AAGAGATGGAGGAGGGGGGAAAGGAGGGCCGGCGTTGGTGTTGCGAATCG
AGGGAGGGGTACTGCAAGCGGCAGGAAGTGCGGGAGCTGTAGGTAGTGAT
GCTAGACAATTTAGTCCACATTATTACTTTACGGAGTTCTTTGACAGGGT
GACGGTTTTGGGGCTTCAGCAGGAGATTGCCCCTCGCAGAGGTGGTGAGG
CGGTGGCCGGGGAGGGCGGGGAAGAAGGCAATGAAGTTGAGGTAGGGGTG
GCTGAGGGCAAAAAAAGGGGGGGGGGAGGGTAGAGTTGTAAGGACACGTC
GGCTTTGCAGCTGATGGTACGTTTTTATTAAGCTTACTTTTTCATCAATT
CTTCATCCCTTTTCTTTCTCTTTTTCTTCGTCCCCCATTAGTGTATCGCA
CGCGAGATTACATGCTGTATACTTTCACAAGCCCCCCTCACACTCTATTG
CCTCGCCATCCCTCTCTTGCTCTCCAAAAAACCCGCGAGAGTCATCAAAT
TTTGCCCATCCCCAGGCGTCCTCTCACTCCCACTTTCCCCCCTCTTCCTC
ACCCCAATCTCCATCCAAGTGGATCCGGCCTCCCTCGGCCCACGCCCAGG
AAACAGACGGACTGGAGTTCTCCCAGCCCCTCCAAGACCAAGCCGCCCAC
GGCGTCGCCTGTAAAGTCCGCATCCTCCTTGACCGCCGCCAGTACCTGGA
GCAGCAGTACCAGGGGCGACGGCGACTGTCACCCGAGCTGAGCAAGGTGT
TGAGGCTGCGAAAGGAAGAAAGGCAAGAGACAGTGGAAGCAGCGTTGTTG
GGACTGATAGCGACCAGGCAGCTCTTCCTCCATTCCGAGCCGGGGTGGAT
CCAATGCGACGACGACTTGTGGCGACTGTTTGGAAGGGGCTTGGAGGAAG
AGAGGACGGAAGAGGAAAGGGGGGGAGGAGGAGGAGGCGGAGGAAAAGGA
GGAGGAGGCGGAGGAGAAGAAGATGATGGGGAAGGGAGAAGTGGAAAGCT
GCATGTGTCAACATTGGCAAGCAGACTTGAAGGTAGGGGGCGGGGTGCGC
ATGTAGGTGGGGAAAAGGGTTATATAGAGGGTTGACCGTGAGAAAAAGCA
TAATGAAAACCGACCAACTCACCCTCCCTTCGACTCTCCCTTCCCCTCTT
TTTTAAAACTTTATTTCATTCTCTTTCTCTCTCCCTTCCTCTCTCTCTAC
ACGTATGTATACATGTTCTCTATCTCCCTCCAGAGCATATCTCGCCTCTT
GAGCCCCTGGTCATCGATTACAAAATTCCCCCTTGCCAAGATCTGGACGA
CGACAAGGAAGGAGAAAGGAAGGAGGGAGGGGAGGGTTCACGTTGGCGCG
AGCGCACGAGGATATTTGATGTCCAGGTGGAGACAGGGCCCGGGAGAGAC
GACCTCCAAGCACGCCTCAATGCTCTTGTGGAGGAAAGCCAGCTGCTGCC
GCCACCGCCATCGGCGCCGCAACAACAACGGCAGCAGCAGCGGCTACAGC
AGCGGCTACAGCAGCCACCGAGAAGAGTGAAGGCGAGATCGAGGAGGAAA
AAGGGGCGAAAGAGAAGACGTAGACAAGCGAAAAAGGAAGTCCAGGAACA
AATCCCAGTGAAAAAAGAAGACGAAAACCCGGAGGAGGGAGAGGAGGAGG
AGGGACAGGAAGAGGAAGACGAGGAGGAAGAGGAGGAGGAGGAAGCAGGG
GAGGAAGCTATCCGGAGATTGGACAAGAAGATTGCATATGTGGGGGGGTT
GTTAATGGAGAGGGTAAGGACCTTGGTCCGCCTTAAGGAGCTGGCAAAGA
ACCCAGGACAGGTCCTGGTGCAGATGGAGGAGGAGGAGGCAGTGGCGGCG
ATGCTAGGGGAGGATACATTGCGTTCGGTGGTGGGTGTGCTGAAAAGGAC
AGGGAGTGGGGGTGGCGAGGCGGAGGACAGTGAAGGCAGTGGATCGCCGT
CGTCGCTGTGGCTCAAGTACTTGGACCAGTATTTGCAGCAACCGCAGCAG
CAGCATCCTGCTGCGATACGCTAAGAGGAATCGAGTGGCGACTTGCAAGG
CGGCTCCACCCTGTGCCTCCACCTTTTCCCTCCATCTTCTGCTCCTAGAT
GTAGAGGGAGGCAGGGCCCCGGTGAGTCATAGCAGTCGTGGCGGTGGTTC
AGAAAGCGTTCGGGGGTGGGACTGTTCCGGAAAGGCCTATCAGCACCAAG
GACTTATCCTCCTGGGGGGGGGGAGGGGGCACCTTCCAGTGACTGGATCG
CACTCGCCGACTCCCGACAGAGCAACACCTGCATCGGTAGGGACTTTGCT
CCCTTCAACCGTGGAGTCTACCCGGGCTCGTCACGCGGGAAACAAGACAA
ACTAAACGTGTGACGGCCCTTGTCCCGAGAGGCCGCCTTGTACAAGAAAT
GCTTTTGGGTGATTGCGTCGCCAGCACGCGACGCAAGTAGGAAGGAACAT
CAGCGAGCAAGCAAAAGAACCAGCAAACCAAGAAACATCAAGG
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Coding sequence (CDS) from alignment at chr18:423537..426529+

>NO18G01220.1 ID=NO18G01220.1|Name=NO18G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=1815bp|location=Sequence derived from alignment at chr18:423537..426529+ (Nannochloropsis oceanica)
ATGTTGCAGGTGTGTGACAAGGCGGAGAACGACTGCTGGAGAGCGCTTCA
AAAGTTTTTCCCTGCGCAGGCCACTCGGTTGGCGCGCTTGGACAGATTTG
AGCGGGACTTGCAGTACAAATTGCTGCGTAAACGCAGGTTGAGTACACAG
CACATGGGGGGACCAGACGTTGCCCCTGCTACGCAGACATTGCGCATATA
CGTCCATCACCGTTTTGTCCGCCTTATGATTTCTCCTTCGTCGTCCTTGT
CGTCAAAAGAAAGCGTAATCGGCAGCCGTAGTCGTGGTGGTGACGGCAGC
GGTAATGATGGGCGAGGAGGAAGAGATGGAGGAGGGGGGAAAGGAGGGCC
GGCGTTGGTGTTGCGAATCGAGGGAGGGGTACTGCAAGCGGCAGGAAGTG
CGGGAGCTGTAGGTAGTGATGCTAGACAATTTAGTCCACATTATTACTTT
ACGGAGTTCTTTGACAGGGTGACGGTTTTGGGGCTTCAGCAGGAGATTGC
CCCTCGCAGAGGTGGTGAGGCGGTGGCCGGGGAGGGCGGGGAAGAAGGCA
ATGAAGTTGAGTGGATCCGGCCTCCCTCGGCCCACGCCCAGGAAACAGAC
GGACTGGAGTTCTCCCAGCCCCTCCAAGACCAAGCCGCCCACGGCGTCGC
CTGTAAAGTCCGCATCCTCCTTGACCGCCGCCAGTACCTGGAGCAGCAGT
ACCAGGGGCGACGGCGACTGTCACCCGAGCTGAGCAAGGTGTTGAGGCTG
CGAAAGGAAGAAAGGCAAGAGACAGTGGAAGCAGCGTTGTTGGGACTGAT
AGCGACCAGGCAGCTCTTCCTCCATTCCGAGCCGGGGTGGATCCAATGCG
ACGACGACTTGTGGCGACTGTTTGGAAGGGGCTTGGAGGAAGAGAGGACG
GAAGAGGAAAGGGGGGGAGGAGGAGGAGGCGGAGGAAAAGGAGGAGGAGG
CGGAGGAGAAGAAGATGATGGGGAAGGGAGAAGTGGAAAGCTGCATGTGT
CAACATTGGCAAGCAGACTTGAAGAGCATATCTCGCCTCTTGAGCCCCTG
GTCATCGATTACAAAATTCCCCCTTGCCAAGATCTGGACGACGACAAGGA
AGGAGAAAGGAAGGAGGGAGGGGAGGGTTCACGTTGGCGCGAGCGCACGA
GGATATTTGATGTCCAGGTGGAGACAGGGCCCGGGAGAGACGACCTCCAA
GCACGCCTCAATGCTCTTGTGGAGGAAAGCCAGCTGCTGCCGCCACCGCC
ATCGGCGCCGCAACAACAACGGCAGCAGCAGCGGCTACAGCAGCGGCTAC
AGCAGCCACCGAGAAGAGTGAAGGCGAGATCGAGGAGGAAAAAGGGGCGA
AAGAGAAGACGTAGACAAGCGAAAAAGGAAGTCCAGGAACAAATCCCAGT
GAAAAAAGAAGACGAAAACCCGGAGGAGGGAGAGGAGGAGGAGGGACAGG
AAGAGGAAGACGAGGAGGAAGAGGAGGAGGAGGAAGCAGGGGAGGAAGCT
ATCCGGAGATTGGACAAGAAGATTGCATATGTGGGGGGGTTGTTAATGGA
GAGGGTAAGGACCTTGGTCCGCCTTAAGGAGCTGGCAAAGAACCCAGGAC
AGGTCCTGGTGCAGATGGAGGAGGAGGAGGCAGTGGCGGCGATGCTAGGG
GAGGATACATTGCGTTCGGTGGTGGGTGTGCTGAAAAGGACAGGGAGTGG
GGGTGGCGAGGCGGAGGACAGTGAAGGCAGTGGATCGCCGTCGTCGCTGT
GGCTCAAGTACTTGGACCAGTATTTGCAGCAACCGCAGCAGCAGCATCCT
GCTGCGATACGCTAA
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Synonyms
Publications