NO18G01220.2, NO18G01220.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01220.2
Unique Name	NO18G01220.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2464
Alignment location	chr18:423537..426529 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:423537..426529 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO18G01220.2 vs.

BLAST of NO18G01220.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01220	NO18G01220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01220.2	NO18G01220.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01220.2.cds1	NO18G01220.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G01220.2.cds2	NO18G01220.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G01220.2.cds3	NO18G01220.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:423537..426529+
coding sequence from alignment at chr18:423537..426529+

mRNA sequence

>NO18G01220.2 ID=NO18G01220.2|Name=NO18G01220.2|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp
AACACAGAGCGAGGCACCGGCATAGTAAGAAAAGCGAGGCGGTGGGCGGT
AAACCCGAGGAGACGACGATGTTGCAGGTGTGTGACAAGGCGGAGAACGA
CTGCTGGAGAGCGGTGAGTACTATATTTAGACAGCTATAATGGTGTTGTG
TGTGCTGCCGACCTCTCCTCCCTCCCCTTCTCAAACAACCCTCCCCGCTA
TGGGCACGAACTCGCATGCACACAGCTTCAAAAGTTTTTCCCTGCGCAGG
CCACTCGGTTGGCGCGCTTGGACAGATTTGAGCGGGACTTGCAGTACAAA
TTGCTGCGTAAACGCAGGTTGAGTACACAGCACATGGGGGGACCAGACGT
TGCCCCTGCTACGCAGACATTGCGCATATACGTCCATCACCGTTTTGTCC
GCCTTATGATTTCTCCTTCGTCGTCCTTGTCGTCAAAAGAAAGCGTAATC
GGCAGCCGTAGTCGTGGTGGTGACGGCAGCGGTAATGATGGGCGAGGAGG
AAGAGATGGAGGAGGGGGGAAAGGAGGGCCGGCGTTGGTGTTGCGAATCG
AGGGAGGGGTACTGCAAGCGGCAGGAAGTGCGGGAGCTGTAGGTAGTGAT
GCTAGACAATTTAGTCCACATTATTACTTTACGGAGTTCTTTGACAGGGT
GACGGTTTTGGGGCTTCAGCAGGAGATTGCCCCTCGCAGAGGTGGTGAGG
CGGTGGCCGGGGAGGGCGGGGAAGAAGGCAATGAAGTTGAGTGGATCCGG
CCTCCCTCGGCCCACGCCCAGGAAACAGACGGACTGGAGTTCTCCCAGCC
CCTCCAAGACCAAGCCGCCCACGGCGTCGCCTGTAAAGTCCGCATCCTCC
TTGACCGCCGCCAGTACCTGGAGCAGCAGTACCAGGGGCGACGGCGACTG
TCACCCGAGCTGAGCAAGGTGTTGAGGCTGCGAAAGGAAGAAAGGCAAGA
GACAGTGGAAGCAGCGTTGTTGGGACTGATAGCGACCAGGCAGCTCTTCC
TCCATTCCGAGCCGGGGTGGATCCAATGCGACGACGACTTGTGGCGACTG
TTTGGAAGGGGCTTGGAGGAAGAGAGGACGGAAGAGGAAAGGGGGGGAGG
AGGAGGAGGCGGAGGAAAAGGAGGAGGAGGCGGAGGAGAAGAAGATGATG
GGGAAGGGAGAAGTGGAAAGCTGCATGTGTCAACATTGGCAAGCAGACTT
GAAGAGCATATCTCGCCTCTTGAGCCCCTGGTCATCGATTACAAAATTCC
CCCTTGCCAAGATCTGGACGACGACAAGGAAGGAGAAAGGAAGGAGGGAG
GGGAGGGTTCACGTTGGCGCGAGCGCACGAGGATATTTGATGTCCAGGTG
GAGACAGGGCCCGGGAGAGACGACCTCCAAGCACGCCTCAATGCTCTTGT
GGAGGAAAGCCAGCTGCTGCCGCCACCGCCATCGGCGCCGCAACAACAAC
GGCAGCAGCAGCGGCTACAGCAGCGGCTACAGCAGCCACCGAGAAGAGTG
AAGGCGAGATCGAGGAGGAAAAAGGGGCGAAAGAGAAGACGTAGACAAGC
GAAAAAGGAAGTCCAGGAACAAATCCCAGTGAAAAAAGAAGACGAAAACC
CGGAGGAGGGAGAGGAGGAGGAGGGACAGGAAGAGGAAGACGAGGAGGAA
GAGGAGGAGGAGGAAGCAGGGGAGGAAGCTATCCGGAGATTGGACAAGAA
GATTGCATATGTGGGGGGGTTGTTAATGGAGAGGGTAAGGACCTTGGTCC
GCCTTAAGGAGCTGGCAAAGAACCCAGGACAGGTCCTGGTGCAGATGGAG
GAGGAGGAGGCAGTGGCGGCGATGCTAGGGGAGGATACATTGCGTTCGGT
GGTGGGTGTGCTGAAAAGGACAGGGAGTGGGGGTGGCGAGGCGGAGGACA
GTGAAGGCAGTGGATCGCCGTCGTCGCTGTGGCTCAAGTACTTGGACCAG
TATTTGCAGCAACCGCAGCAGCAGCATCCTGCTGCGATACGCTAAGAGGA
ATCGAGTGGCGACTTGCAAGGCGGCTCCACCCTGTGCCTCCACCTTTTCC
CTCCATCTTCTGCTCCTAGATGTAGAGGGAGGCAGGGCCCCGGTGAGTCA
TAGCAGTCGTGGCGGTGGTTCAGAAAGCGTTCGGGGGTGGGACTGTTCCG
GAAAGGCCTATCAGCACCAAGGACTTATCCTCCTGGGGGGGGGGAGGGGG
CACCTTCCAGTGACTGGATCGCACTCGCCGACTCCCGACAGAGCAACACC
TGCATCGGTAGGGACTTTGCTCCCTTCAACCGTGGAGTCTACCCGGGCTC
GTCACGCGGGAAACAAGACAAACTAAACGTGTGACGGCCCTTGTCCCGAG
AGGCCGCCTTGTACAAGAAATGCTTTTGGGTGATTGCGTCGCCAGCACGC
GACGCAAGTAGGAAGGAACATCAGCGAGCAAGCAAAAGAACCAGCAAACC
AAGAAACATCAAGG

protein sequence of NO18G01220.2

>NO18G01220.2-protein ID=NO18G01220.2-protein|Name=NO18G01220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MGGPDVAPATQTLRIYVHHRFVRLMISPSSSLSSKESVIGSRSRGGDGSG
NDGRGGRDGGGGKGGPALVLRIEGGVLQAAGSAGAVGSDARQFSPHYYFT
EFFDRVTVLGLQQEIAPRRGGEAVAGEGGEEGNEVEWIRPPSAHAQETDG
LEFSQPLQDQAAHGVACKVRILLDRRQYLEQQYQGRRRLSPELSKVLRLR
KEERQETVEAALLGLIATRQLFLHSEPGWIQCDDDLWRLFGRGLEEERTE
EERGGGGGGGGKGGGGGGEEDDGEGRSGKLHVSTLASRLEEHISPLEPLV
IDYKIPPCQDLDDDKEGERKEGGEGSRWRERTRIFDVQVETGPGRDDLQA
RLNALVEESQLLPPPPSAPQQQRQQQRLQQRLQQPPRRVKARSRRKKGRK
RRRRQAKKEVQEQIPVKKEDENPEEGEEEEGQEEEDEEEEEEEEAGEEAI
RRLDKKIAYVGGLLMERVRTLVRLKELAKNPGQVLVQMEEEEAVAAMLGE
DTLRSVVGVLKRTGSGGGEAEDSEGSGSPSSLWLKYLDQYLQQPQQQHPA
AIR*

mRNA from alignment at chr18:423537..426529+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01220.2 ID=NO18G01220.2|Name=NO18G01220.2|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp|location=Sequence derived from alignment at chr18:423537..426529+ (Nannochloropsis oceanica)
AACACAGAGCGAGGCACCGGCATAGTAAGAAAAGCGAGGCGGTGGGCGGT
AAACCCGAGGAGACGACGATGTTGCAGGTGTGTGACAAGGCGGAGAACGA
CTGCTGGAGAGCGGTGAGTACTATATTTAGACAGCTATAATGGTGTTGTG
TGTGCTGCCGACCTCTCCTCCCTCCCCTTCTCAAACAACCCTCCCCGCTA
TGGGCACGAACTCGCATGCACACAGCTTCAAAAGTTTTTCCCTGCGCAGG
CCACTCGGTTGGCGCGCTTGGACAGATTTGAGCGGGACTTGCAGTACAAA
TTGCTGCGTAAACGCAGGTTGAGTACACAGCACATGGGGGGACCAGACGT
TGCCCCTGCTACGCAGACATTGCGCATATACGTCCATCACCGTTTTGTCC
GCCTTATGATTTCTCCTTCGTCGTCCTTGTCGTCAAAAGAAAGCGTAATC
GGCAGCCGTAGTCGTGGTGGTGACGGCAGCGGTAATGATGGGCGAGGAGG
AAGAGATGGAGGAGGGGGGAAAGGAGGGCCGGCGTTGGTGTTGCGAATCG
AGGGAGGGGTACTGCAAGCGGCAGGAAGTGCGGGAGCTGTAGGTAGTGAT
GCTAGACAATTTAGTCCACATTATTACTTTACGGAGTTCTTTGACAGGGT
GACGGTTTTGGGGCTTCAGCAGGAGATTGCCCCTCGCAGAGGTGGTGAGG
CGGTGGCCGGGGAGGGCGGGGAAGAAGGCAATGAAGTTGAGGTAGGGGTG
GCTGAGGGCAAAAAAAGGGGGGGGGGAGGGTAGAGTTGTAAGGACACGTC
GGCTTTGCAGCTGATGGTACGTTTTTATTAAGCTTACTTTTTCATCAATT
CTTCATCCCTTTTCTTTCTCTTTTTCTTCGTCCCCCATTAGTGTATCGCA
CGCGAGATTACATGCTGTATACTTTCACAAGCCCCCCTCACACTCTATTG
CCTCGCCATCCCTCTCTTGCTCTCCAAAAAACCCGCGAGAGTCATCAAAT
TTTGCCCATCCCCAGGCGTCCTCTCACTCCCACTTTCCCCCCTCTTCCTC
ACCCCAATCTCCATCCAAGTGGATCCGGCCTCCCTCGGCCCACGCCCAGG
AAACAGACGGACTGGAGTTCTCCCAGCCCCTCCAAGACCAAGCCGCCCAC
GGCGTCGCCTGTAAAGTCCGCATCCTCCTTGACCGCCGCCAGTACCTGGA
GCAGCAGTACCAGGGGCGACGGCGACTGTCACCCGAGCTGAGCAAGGTGT
TGAGGCTGCGAAAGGAAGAAAGGCAAGAGACAGTGGAAGCAGCGTTGTTG
GGACTGATAGCGACCAGGCAGCTCTTCCTCCATTCCGAGCCGGGGTGGAT
CCAATGCGACGACGACTTGTGGCGACTGTTTGGAAGGGGCTTGGAGGAAG
AGAGGACGGAAGAGGAAAGGGGGGGAGGAGGAGGAGGCGGAGGAAAAGGA
GGAGGAGGCGGAGGAGAAGAAGATGATGGGGAAGGGAGAAGTGGAAAGCT
GCATGTGTCAACATTGGCAAGCAGACTTGAAGGTAGGGGGCGGGGTGCGC
ATGTAGGTGGGGAAAAGGGTTATATAGAGGGTTGACCGTGAGAAAAAGCA
TAATGAAAACCGACCAACTCACCCTCCCTTCGACTCTCCCTTCCCCTCTT
TTTTAAAACTTTATTTCATTCTCTTTCTCTCTCCCTTCCTCTCTCTCTAC
ACGTATGTATACATGTTCTCTATCTCCCTCCAGAGCATATCTCGCCTCTT
GAGCCCCTGGTCATCGATTACAAAATTCCCCCTTGCCAAGATCTGGACGA
CGACAAGGAAGGAGAAAGGAAGGAGGGAGGGGAGGGTTCACGTTGGCGCG
AGCGCACGAGGATATTTGATGTCCAGGTGGAGACAGGGCCCGGGAGAGAC
GACCTCCAAGCACGCCTCAATGCTCTTGTGGAGGAAAGCCAGCTGCTGCC
GCCACCGCCATCGGCGCCGCAACAACAACGGCAGCAGCAGCGGCTACAGC
AGCGGCTACAGCAGCCACCGAGAAGAGTGAAGGCGAGATCGAGGAGGAAA
AAGGGGCGAAAGAGAAGACGTAGACAAGCGAAAAAGGAAGTCCAGGAACA
AATCCCAGTGAAAAAAGAAGACGAAAACCCGGAGGAGGGAGAGGAGGAGG
AGGGACAGGAAGAGGAAGACGAGGAGGAAGAGGAGGAGGAGGAAGCAGGG
GAGGAAGCTATCCGGAGATTGGACAAGAAGATTGCATATGTGGGGGGGTT
GTTAATGGAGAGGGTAAGGACCTTGGTCCGCCTTAAGGAGCTGGCAAAGA
ACCCAGGACAGGTCCTGGTGCAGATGGAGGAGGAGGAGGCAGTGGCGGCG
ATGCTAGGGGAGGATACATTGCGTTCGGTGGTGGGTGTGCTGAAAAGGAC
AGGGAGTGGGGGTGGCGAGGCGGAGGACAGTGAAGGCAGTGGATCGCCGT
CGTCGCTGTGGCTCAAGTACTTGGACCAGTATTTGCAGCAACCGCAGCAG
CAGCATCCTGCTGCGATACGCTAAGAGGAATCGAGTGGCGACTTGCAAGG
CGGCTCCACCCTGTGCCTCCACCTTTTCCCTCCATCTTCTGCTCCTAGAT
GTAGAGGGAGGCAGGGCCCCGGTGAGTCATAGCAGTCGTGGCGGTGGTTC
AGAAAGCGTTCGGGGGTGGGACTGTTCCGGAAAGGCCTATCAGCACCAAG
GACTTATCCTCCTGGGGGGGGGGAGGGGGCACCTTCCAGTGACTGGATCG
CACTCGCCGACTCCCGACAGAGCAACACCTGCATCGGTAGGGACTTTGCT
CCCTTCAACCGTGGAGTCTACCCGGGCTCGTCACGCGGGAAACAAGACAA
ACTAAACGTGTGACGGCCCTTGTCCCGAGAGGCCGCCTTGTACAAGAAAT
GCTTTTGGGTGATTGCGTCGCCAGCACGCGACGCAAGTAGGAAGGAACAT
CAGCGAGCAAGCAAAAGAACCAGCAAACCAAGAAACATCAAGG

Coding sequence (CDS) from alignment at chr18:423537..426529+

>NO18G01220.2 ID=NO18G01220.2|Name=NO18G01220.2|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr18:423537..426529+ (Nannochloropsis oceanica)
ATGGGGGGACCAGACGTTGCCCCTGCTACGCAGACATTGCGCATATACGT
CCATCACCGTTTTGTCCGCCTTATGATTTCTCCTTCGTCGTCCTTGTCGT
CAAAAGAAAGCGTAATCGGCAGCCGTAGTCGTGGTGGTGACGGCAGCGGT
AATGATGGGCGAGGAGGAAGAGATGGAGGAGGGGGGAAAGGAGGGCCGGC
GTTGGTGTTGCGAATCGAGGGAGGGGTACTGCAAGCGGCAGGAAGTGCGG
GAGCTGTAGGTAGTGATGCTAGACAATTTAGTCCACATTATTACTTTACG
GAGTTCTTTGACAGGGTGACGGTTTTGGGGCTTCAGCAGGAGATTGCCCC
TCGCAGAGGTGGTGAGGCGGTGGCCGGGGAGGGCGGGGAAGAAGGCAATG
AAGTTGAGTGGATCCGGCCTCCCTCGGCCCACGCCCAGGAAACAGACGGA
CTGGAGTTCTCCCAGCCCCTCCAAGACCAAGCCGCCCACGGCGTCGCCTG
TAAAGTCCGCATCCTCCTTGACCGCCGCCAGTACCTGGAGCAGCAGTACC
AGGGGCGACGGCGACTGTCACCCGAGCTGAGCAAGGTGTTGAGGCTGCGA
AAGGAAGAAAGGCAAGAGACAGTGGAAGCAGCGTTGTTGGGACTGATAGC
GACCAGGCAGCTCTTCCTCCATTCCGAGCCGGGGTGGATCCAATGCGACG
ACGACTTGTGGCGACTGTTTGGAAGGGGCTTGGAGGAAGAGAGGACGGAA
GAGGAAAGGGGGGGAGGAGGAGGAGGCGGAGGAAAAGGAGGAGGAGGCGG
AGGAGAAGAAGATGATGGGGAAGGGAGAAGTGGAAAGCTGCATGTGTCAA
CATTGGCAAGCAGACTTGAAGAGCATATCTCGCCTCTTGAGCCCCTGGTC
ATCGATTACAAAATTCCCCCTTGCCAAGATCTGGACGACGACAAGGAAGG
AGAAAGGAAGGAGGGAGGGGAGGGTTCACGTTGGCGCGAGCGCACGAGGA
TATTTGATGTCCAGGTGGAGACAGGGCCCGGGAGAGACGACCTCCAAGCA
CGCCTCAATGCTCTTGTGGAGGAAAGCCAGCTGCTGCCGCCACCGCCATC
GGCGCCGCAACAACAACGGCAGCAGCAGCGGCTACAGCAGCGGCTACAGC
AGCCACCGAGAAGAGTGAAGGCGAGATCGAGGAGGAAAAAGGGGCGAAAG
AGAAGACGTAGACAAGCGAAAAAGGAAGTCCAGGAACAAATCCCAGTGAA
AAAAGAAGACGAAAACCCGGAGGAGGGAGAGGAGGAGGAGGGACAGGAAG
AGGAAGACGAGGAGGAAGAGGAGGAGGAGGAAGCAGGGGAGGAAGCTATC
CGGAGATTGGACAAGAAGATTGCATATGTGGGGGGGTTGTTAATGGAGAG
GGTAAGGACCTTGGTCCGCCTTAAGGAGCTGGCAAAGAACCCAGGACAGG
TCCTGGTGCAGATGGAGGAGGAGGAGGCAGTGGCGGCGATGCTAGGGGAG
GATACATTGCGTTCGGTGGTGGGTGTGCTGAAAAGGACAGGGAGTGGGGG
TGGCGAGGCGGAGGACAGTGAAGGCAGTGGATCGCCGTCGTCGCTGTGGC
TCAAGTACTTGGACCAGTATTTGCAGCAACCGCAGCAGCAGCATCCTGCT
GCGATACGCTAA

Synonyms

Publications