NO18G01060, NO18G01060 (gene) Nannochloropsis oceanica

Overview
NameNO18G01060
Unique NameNO18G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2205
Alignment locationchr18:375411..377615 -

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Properties
Property NameValue
DescriptionZinc finger, CCCH-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:375411..377615 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR000571Znf_CCCH
IPR013520Exonuclease_RNaseT/DNA_pol3
Homology
BLAST of NO18G01060 vs. NCBI_GenBank
Match: EWM23333.1 (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 656.0 bits (1691), Expect = 1.400e-184
Identity = 402/738 (54.47%), Postives = 451/738 (61.11%), Query Frame = 0
Query:    1 MAPATLKYKLKKVEEGLAGDEKPVCAFFSLPQGCRNGAKCPFMHGEAGAASEERPKATPTNKTTGVTKNAQAMQQVRLQLASE---QAKKRTAPAPSTPVGGATSTFAKRFKXXXXXXXXXXXXXXXXXXXXXXXPAPPLNVIKPTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTDDVMNPFLAIARPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIXXXXIAAAVAPIERRPAARVTAAALTNNKPANGNGVGMLGKISALPVTPFTITHNHKMEMKQEEVEVEDGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVHGESNWSCCVKATLDHARFEPNYRVVASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAASNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATG-DGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYVQVRLMYAPGKEEGEEGGEGVVKEDATSSPPAKIF 735
            MAPAT KYKL + E+  A  EK VCAFF+LPQGCRNGA C F+H    AA+   P+AT  N     TKN+ AMQQVRLQ+ ++   Q+KKR                     XXXXXXXXXXXXXXXXX          +++   +V                                  DV NPFLA+  P                                                                  +A    +  +P+   ++ A     P  GNGV ML K+SALPVTPFTI        + ++ E EDGE+                                                  C H  S W+ CVKAT++HARFE NYR +A++ KGE +WI AKKHGAWC+DLPHVLALDCEMCATRDPVSMEQDGKALIRLSVV GHDE QVLLDTLVLPSLPV+DYRTDIHGIRPEDLR VMFTFRHAQAAMLHLCCTETVL+GHGL NDLTALKMKHS+VVDTALLFEREDAPNHTPALKDVA ALLGLDM DMHDSVADAQVTLRIARHFL++GPVAPVPRLPAA NKKGRRAEA QSCLLLHRIP +V A HI +MFQ+RTHV PV VDPV  +G +GSLGRATARFLSK HADLAF+TLTGPARPDKDGR QKRVHLAGKKDYVQVRLMYAPG E G EG +G   E+    P AK+F
Sbjct:    1 MAPATPKYKLVRAEDSGAAGEKAVCAFFTLPQGCRNGANCSFVHAGTVAATVPAPRATLPN----TTKNSHAMQQVRLQIGADKQGQSKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLPRAVKAAVHIGPTSVTAVSRKNNIASTGKPTAEPCVG-----------HDVTNPFLAVVPPPPATSHLRQPVAAAAKRGAPVHSVQK-----------------------------------KRGDFSALSVSVPVQPSQSASSPA----SPRVGNGVSMLSKLSALPVTPFTIARKPNGATRDDD-EPEDGEL------------VQGEGEEGEDSAQSVVGANLSQHAKEESCQAEAVKEEVCFHAGSPWTGCVKATMEHARFEANYRALAAQKKGEADWIEAKKHGAWCRDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVCGHDEKQVLLDTLVLPSLPVIDYRTDIHGIRPEDLRQVMFTFRHAQAAMLHLCCTETVLIGHGLCNDLTALKMKHSRVVDTALLFEREDAPNHTPALKDVASALLGLDMADMHDSVADAQVTLRIARHFLDRGPVAPVPRLPAAPNKKGRRAEAVQSCLLLHRIPSFVTAAHIKDMFQTRTHVAPVTVDPVATSGAEGSLGRATARFLSKGHADLAFATLTGPARPDKDGRLQKRVHLAGKKDYVQVRLMYAPG-EAGHEGRDG---EEEPDLPSAKVF 667          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: OEU22560.1 (hypothetical protein FRACYDRAFT_179299 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 256.1 bits (653), Expect = 3.200e-64
Identity = 143/331 (43.20%), Postives = 191/331 (57.70%), Query Frame = 0
Query:  381 WSCCVKATLDHARFEPN-----YRVVASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLE-QGPVAPVPRLPAASNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYVQVRLM 706
            W   V  +  HAR+  +     Y+   +K   +  WI AK +G+WC   P  +A+DCEMC ++DP+S  ++ KAL RLSVV+     +VLLDTLV PS PV DYRT I+G+  E L  V FT RHAQA M+ LC  ETV+VGH L NDL AL M+H  V D++ LF  +D P  TP+LKD    +   +MP  HDSV D++  L    H+++  G V  V R     NKK    E  Q  L +HRIP   KAEH+  MF   T++ P  V+ +  +  GSLG+    F S  HA+L F +L G    +K GR QK+V+L    DY++VR M
Sbjct:  251 WQNAVIESRKHARYNNSFDFNRYQENDAKNGIQSSWIKAKAYGSWCASNPQAIAIDCEMCESQDPLSGAKNAKALCRLSVVNAEKPEEVLLDTLVKPSWPVTDYRTRINGVTKEHLDPVEFTLRHAQAFMMALCNEETVIVGHALHNDLVALNMEHDVVADSSFLFHAKDNPTATPSLKDTVMTMFKKEMPQTHDSVNDSRKALECVMHWVDNDGKVESVERTAKYPNKK----EGNQ--LFVHRIPKVCKAEHLSNMFLKTTNIQPTEVEEIQFS--GSLGKTHVTFKSTRHANLVFESLEGKTEEEKSGRQQKKVYLR-NGDYIRVRKM 572          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: CBJ28710.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 250.4 bits (638), Expect = 1.800e-62
Identity = 143/356 (40.17%), Postives = 200/356 (56.18%), Query Frame = 0
Query:  381 WSCCVKATLDHARFEPNYRVVASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPD-MHDSVADAQVTLRIARHFLEQ--GPVAPVPRLPAASNK----------------------------KGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLA--GKKDYVQVR 704
            W   V+ T  H +F  NY      T     W+ A   G  C  LP V+ALDCEMC + DP+S E++GK L+RLS+V G D  + L+DTLV P  PVVD+RTDIHG+ PE L  VMFT RHAQ A+  +CC  TV++GH L NDL+ALKM H +VVDT+ LFE  D    TP+LKDV    LG  + D  HDSV DA+ TL +AR+ LE+   P+ P+ R   AS +                            +  +AE ++  L++HR+P     E ++ + Q +T V+    + +  T  G+ G+    + +K  AD+AF+ ++  A+ D  GR QKR++ +  GKK Y+ VR
Sbjct:  570 WQGLVERTRAHPKFAKNYSFETDAT-----WVTASPCGDSCPGLPQVIALDCEMCMSEDPLSKERNGKELLRLSIVRGED-GEKLMDTLVRPGNPVVDWRTDIHGVAPEHLEGVMFTHRHAQVAISRICCPHTVIIGHALNNDLSALKMTHDRVVDTSFLFEGSDEKFSTPSLKDVVKVALGRHIQDGSHDSVTDAKSTLEVARYALEKVGAPLPPIDRTKKASRRWNGEGSSDDAGGRKKRRGLENGEDDADARAAKAEKERRSLMVHRLPAGTTPEQLMRVMQKKTKVIAQEAEGIEFT--GTTGKTHVVYATKELADVAFNGISTAAKEDTSGRLQKRIYTSEDGKK-YIAVR 916          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: XP_002293752.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88761.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 246.9 bits (629), Expect = 1.900e-61
Identity = 142/334 (42.51%), Postives = 195/334 (58.38%), Query Frame = 0
Query:  381 WSCCVKATLDHARFEPNYRVVASK-------TKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFL-EQGPVAPVPRLPAASNKKGR-RAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYVQVRLM 706
            W   V AT DHA ++  +    +K             WI  + +G WCK+ P  +A+DCEMC T+DPV+ + D KAL RLSV++  +  +VLLDTLV    PV +YRT I+GI+ +DL  V FT RHAQ  M  LC  +TV+VGH + NDL AL+M H    DTA+L+   +    TP+LK++A  +L  DMP++HDSV DA+V L  A H+  + G V PV ++   +N  GR R  A  + LL+HR+P   +  HI +MF + T + P  V  +  T  G  G+    F SK HA+LA+++L G  R DK G+ QKRV L     YV VR M
Sbjct:  265 WKNAVIATRDHANYDNAFNFERTKQLEFEQGISTPHHWITTRPYGDWCKNNPASIAIDCEMCETQDPVTGKTDTKALCRLSVINADNPTEVLLDTLVKSEWPVSNYRTWINGIKAKDLEGVQFTLRHAQMFMNALCSEQTVVVGHAVHNDLLALRMIHHCNADTAMLYNHSEEEGGTPSLKNLAYGVLKRDMPEVHDSVNDARVALACADHYCSKNGKVDPVEKVFRRNNGGGRDRDPADTAVLLVHRLPPTSQPGHIADMFLAYTCIKPKNVPEI--TFSGQHGKCHVEFTSKDHAELAYASLNGEEREDKTGKKQKRVGLK-NGSYVCVRKM 595          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: GAX09948.1 (RNA exonuclease 1 [Fistulifera solaris])

HSP 1 Score: 238.4 bits (607), Expect = 6.900e-59
Identity = 135/348 (38.79%), Postives = 197/348 (56.61%), Query Frame = 0
Query:  381 WSCCVKATLDHARFEPNYRVVASKTKGE-------GEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAASNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLT-GPARPDKDGRPQKRVHLAGKKDYVQVRLMYAPGKEEGEEGGEGV 721
            W   ++ T     F  NY     K K E         W+ AK +GAWC+ LP V+A+DCEMC T+DPVS +++  AL R+S+V    + +VLLD+L  P+ PV ++R+ ++GI  E L +V FT RHAQA ++ LC  ETV+VGH + NDL A++M+H  VVD+ALLF+  D+   T +LKD A ++LG DMPD HDSV DA   L    ++L++G         + +    +      S L +HRIP  V  EH+  +F +   + P++V+ +     G++G+    F S  HA LAF  L  G   PD  GR QK+V L   K Y++VR M     E+ E+  + +
Sbjct:  262 WINAIQTTQSSKAFAINYNFAKYKQKDEESGICSANGWVKAKPYGAWCEKLPQVIAIDCEMCETQDPVSGDKNFNALCRISIVDAVTK-EVLLDSLCKPAWPVSNHRSWVNGITEEHLENVQFTVRHAQAFLMALCSEETVIVGHAVHNDLAAVRMEHYCVVDSALLFKATDSETATVSLKDSAKSILGKDMPDTHDSVNDALTALECLEYYLQKGSDMKTIDRSSNTPSSAKSFTFYASQLFVHRIPNTVNEEHLTNLFLAHADIKPLSVETI--EFQGNMGKTHVVFRSPEHATLAFQYLEGGKPEPDPSGRLQKKVFLR-NKSYIRVRKMAFEKTEKAEKSDDDI 605          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: GAX14475.1 (RNA exonuclease 1 [Fistulifera solaris])

HSP 1 Score: 234.6 bits (597), Expect = 1.000e-57
Identity = 132/333 (39.64%), Postives = 190/333 (57.06%), Query Frame = 0
Query:  381 WSCCVKATLDHARFEPNYRVVASKTKGE-------GEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAASNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLT-GPARPDKDGRPQKRVHLAGKKDYVQVRLM 706
            W   ++ T     F  NY     K K E         W+ AK +G WC+ LP V+A+DCEMC T+DPVS +++  AL R+S+V    + +VLLD+L  P+ PV ++R+ ++GI  E L +V FT RHAQA ++ LC  ETV+VGH + NDL A++M+H  VVD+ALLF+  D+   T +LKD A ++LG DMP+ HDSV DA   L    ++L++G         + +    +      S L +HRIP  V  EH+  +F +   + P++V+ +     GS+G+    F S  HA LAF  L  G   PD  GR QK+V L   K Y++VR M
Sbjct:  208 WINAIQTTQSSKAFAINYNFAKYKQKDEESGICSANGWVKAKPYGPWCEKLPQVIAIDCEMCETQDPVSGDKNFNALCRISIVDAVTK-EVLLDSLCKPAWPVSNHRSWVNGITEEHLENVQFTVRHAQAFLMALCSEETVIVGHAVHNDLAAVRMEHYCVVDSALLFKATDSETATVSLKDSAKSILGKDMPETHDSVNDALTALECLEYYLQKGSDMKTIDRSSNTPSSAKSFTFYASQLFVHRIPNTVNEEHLTNLFLAHADIKPLSVETI--EFQGSMGKTHVVFRSPEHATLAFQYLEGGKPEPDPSGRLQKKVFLR-NKSYIRVRKM 536          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: XP_002186127.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65597.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 227.3 bits (578), Expect = 1.600e-55
Identity = 130/336 (38.69%), Postives = 186/336 (55.36%), Query Frame = 0
Query:  379 SNWSCCVKATLDHARFEPNYRVVASKT-------KGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQ-GPVAPVPRLPAASNKKGRRAEAQQSCLLLHRIPLYVKAE-HILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYVQVRLM 706
            + W   ++    H ++   Y  V  K             WI AK +G WCK  P  +A+DCEMC T DPVS + + K L R+S+V+  + ++VLLD+LV PS PVVDYR+ I+GI  E L+ V FT RH QA ++ LC  ETV++GH L NDL A++M+H    D+A LF   D+   + +LKD+A  +L   MPD HDSV DA+   ++  H++E+ G V P+ R  +         +   S L +HRIP  +  E H+  MF + T + P  V+ +   G+  +G+    F S  HA+LAF TL      D  GR QK+V L     Y++VR M
Sbjct:  235 AKWMKAIQQARQHHKYATAYDFVKYKALDAEIGLDPSSTWIQAKPYGEWCKGFPQAIAIDCEMCETEDPVSGKHNAKDLCRVSIVNA-ENDEVLLDSLVKPSWPVVDYRSRINGITEEHLKGVQFTLRHTQAFLMALCSQETVILGHALHNDLAAMRMEHYCNADSANLFSASDSERSSVSLKDLASNVLKKTMPDKHDSVNDARTAWKVLEHWVEKDGQVEPIVRSMSVK-------QTFASQLFIHRIPKNMCEESHLSRMFLAHTSIAPTEVEEIEFAGE--MGKTHVVFKSPQHANLAFDTLDSKTDTDPSGRLQKKVFLR-NGGYIRVRKM 559          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: XP_002905590.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68431.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 172.9 bits (437), Expect = 3.600e-39
Identity = 122/370 (32.97%), Postives = 179/370 (48.38%), Query Frame = 0
Query:  378 ESNWSCCVKATLDHARFEPNYRVVASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSG-HDENQVLLDTLV---LPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFERED-APNH-TPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFL--EQG-------------PVAPVP--------------RLPAASNKKGRRAEAQQSC-LLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLTGP-----ARPDKDGRPQKRVHLAG--KKDYVQVRL 705
            E  W   V+ T    RFE  +    +  + E  W+  K      K   +++A+DCEMC T+D  + E+   AL R+S V G H    ++ D +V    P   +VD +TDIHGI P+ + S   T   AQ  ML     +T++VGH +  DL ++++ H +V+DTAL+F+R+D +P+  TP LKD+   LLG DMP  HDS  DAQ ++  A++    E G             P  PVP               +   + K    A   +SC L LHRIP  + ++ I + F   TH++P AV+ +V   + + G     F +  HA LAF +  GP        D  GRPQK + +     K Y  V L
Sbjct:   17 EDEWEQLVQLTQKSERFEKLF----TFPEDEPGWVTTKSKKK--KTHLNIVAVDCEMCVTQDESNCERKTNALCRVSAVDGEHMLRNIISDFIVHQPEPGFHMVDPKTDIHGITPQQIASCKITVAQAQKKMLKYINKDTIVVGHSVYGDLASMRINHRRVIDTALIFQRKDGSPSRATPGLKDLTKFLLGFDMPQGHDSTVDAQASMMAAKYAARHETGRIIPSALELHGPQPGKPVPVKIPVNDASYIDMAAIETTARKHKSEAMIARSCRLRLHRIPKGLSSKDIEKWFYENTHIVPTAVEKIVWLPNQNRGSCNVTFSTNAHAALAFESAQGPNGKTKITNDSIGRPQKTIAIVSYMGKTYKNVAL 380          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: ETI38683.1 (hypothetical protein F443_15653 [Phytophthora parasitica P1569])

HSP 1 Score: 168.7 bits (426), Expect = 6.700e-38
Identity = 119/377 (31.56%), Postives = 177/377 (46.95%), Query Frame = 0
Query:  378 ESNWSCCVKATLDHARFEPNYRVVASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVL----PSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDA--PNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFL--EQGPVAP-------------VPRLPA---------------------ASNKKGRRAEAQQSC-LLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLTGP-----ARPDKDGRPQKRVHLAG--KKDYVQVRL 705
            ++ W   V+ T    RFE  +    S  + E  W+  K      K    ++A+DCEMC T++  + E+   AL R+S V G +  + ++   ++    P   +VD +TDIHGI P  + S   T   AQ  ML     +T++VGH +  DL ++++ H +V+DTAL+F+R+D      TP LKD+  ALLG DMP  HDS  DAQ ++  A++    E G + P              PR PA                      + K    A   +SC L LHRIP  + ++ I + F   T+++P AV+ +V   + + G     F +  HA LAF T  GP        D  GRPQK + +     K Y  V L
Sbjct:   57 DAEWEQLVQLTQQSERFEKLF----SFPEDEPGWVTTKSKKK--KTHLKIVAVDCEMCVTQEEGTCERKTNALCRVSAVDGENMLRNIISDFIVHQPEPGFHMVDPKTDIHGITPVQIASCKITVAQAQKKMLKYINKDTIVVGHSVYGDLASMRINHRRVIDTALIFQRKDGSPTRATPGLKDLTKALLGFDMPQGHDSTVDAQASMMAAKYAARHETGRIIPSALELHGPPYHPGEPREPAKPTPVKIPVNDASYIDMAAIETTRKHKSEAMIARSCRLRLHRIPKGLSSKDIEKWFIENTNIVPTAVEKIVWLPNQNRGSCNVTFATNAHAALAFETAQGPNGKTKITNDSIGRPQKTIAIVSFMGKTYKNVAL 427          
BLAST of NO18G01060 vs. NCBI_GenBank
Match: ETP08590.1 (hypothetical protein F441_15472 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 168.7 bits (426), Expect = 6.700e-38
Identity = 119/377 (31.56%), Postives = 177/377 (46.95%), Query Frame = 0
Query:  378 ESNWSCCVKATLDHARFEPNYRVVASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVL----PSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDA--PNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFL--EQGPVAP-------------VPRLPA---------------------ASNKKGRRAEAQQSC-LLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATGDGSLGRATARFLSKHHADLAFSTLTGP-----ARPDKDGRPQKRVHLAG--KKDYVQVRL 705
            ++ W   V+ T    RFE  +    S  + E  W+  K      K    ++A+DCEMC T++  + E+   AL R+S V G +  + ++   ++    P   +VD +TDIHGI P  + S   T   AQ  ML     +T++VGH +  DL ++++ H +V+DTAL+F+R+D      TP LKD+  ALLG DMP  HDS  DAQ ++  A++    E G + P              PR PA                      + K    A   +SC L LHRIP  + ++ I + F   T+++P AV+ +V   + + G     F +  HA LAF T  GP        D  GRPQK + +     K Y  V L
Sbjct:   57 DAEWEQLVQLTQQSERFEKLF----SFPEDEPGWVTTKSKKK--KTHLKIVAVDCEMCVTQEEGTCERKTNALCRVSAVDGENMLRNIISDFIVHQPEPGFHMVDPKTDIHGITPVQIASCKITVAQAQKKMLKYINKDTIVVGHSVYGDLASMRINHRRVIDTALIFQRKDGSPTRATPGLKDLTKALLGFDMPQGHDSTVDAQASMMAAKYAARHETGRIIPSALELHGPPYHPGEPREPAKPTPVKIPVNDASYIDMAAIETTRKHKSEAMIARSCRLRLHRIPKGLSSKDIEKWFIENTNIVPTAVEKIVWLPNQNRGSCNVTFATNAHAALAFETAQGPNGKTKITNDSIGRPQKTIAIVSFMGKTYKNVAL 427          
The following BLAST results are available for this feature:
BLAST of NO18G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23333.11.400e-18454.47Zinc finger, CCCH-type [Nannochloropsis gaditana][more]
OEU22560.13.200e-6443.20hypothetical protein FRACYDRAFT_179299 [Fragilario... [more]
CBJ28710.11.800e-6240.17conserved unknown protein [Ectocarpus siliculosus][more]
XP_002293752.11.900e-6142.51predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX09948.16.900e-5938.79RNA exonuclease 1 [Fistulifera solaris][more]
GAX14475.11.000e-5739.64RNA exonuclease 1 [Fistulifera solaris][more]
XP_002186127.11.600e-5538.69predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002905590.13.600e-3932.97conserved hypothetical protein [Phytophthora infes... [more]
ETI38683.16.700e-3831.56hypothetical protein F443_15653 [Phytophthora para... [more]
ETP08590.16.700e-3831.56hypothetical protein F441_15472 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003961NSK003961Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01060.1NO18G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609085gene_9538Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100053g27gene7134Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01060.1NO18G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01060 ID=NO18G01060|Name=NO18G01060|organism=Nannochloropsis oceanica|type=gene|length=2205bp
ATGGCCCCCGCCACCCTGAAATATAAGCTCAAAAAGGTAGAGGAGGGGCT
GGCCGGGGACGAAAAGCCGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTT
GCCGAAACGGAGCCAAGTGTCCTTTTATGCACGGGGAGGCAGGCGCCGCA
TCCGAGGAGCGGCCCAAGGCCACCCCCACAAATAAGACGACAGGTGTGAC
CAAGAACGCTCAGGCCATGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGC
AGGCTAAGAAGCGTACGGCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCC
ACCAGCACATTTGCCAAAAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGA
GTCCACCGAGGAGGAGGACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCG
CCCCACCCCTCAACGTCATCAAGCCCACAGTTCCTGCGCGACAAGTTCCT
GTGCCGACAAAAACTGCGCCTGCATCCAAAAAGGCAGCTCCTGTCCCCAC
CCTCAGCAAGCCCGTCGGCACGGGCAATACTGATGATGTGATGAATCCTT
TCCTCGCGATTGCTCGGCCTCCCACATCCGCGCCGCCCACGCAACAACAG
CAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGAAGAAGAA
GCAATTTCCTGCAGGACCGGCGACGAACGCCACCCCCGTCACCATAGGAA
ACAAGAAAAACAACACCAGTAACACCAAGCCCCCTCCTGTTGCCAAGACC
ATAGTTCCCGCTCCGATAGCGGCAGCAGTGGCTCCAATCGAACGCAGACC
TGCTGCACGTGTGACTGCCGCTGCCCTCACAAACAACAAACCCGCTAATG
GAAATGGGGTGGGGATGCTTGGGAAGATCTCTGCCTTGCCCGTCACTCCA
TTTACTATCACACACAATCACAAGATGGAAATGAAGCAGGAGGAGGTGGA
GGTGGAGGACGGAGAGGTTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAAC
AGCACTTCAAGGAGGAGATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCC
AAAAAGGTCAAGAAACAACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGT
TGTTATGGAGGAGGAGGTGTGCGTACACGGGGAGAGCAATTGGTCCTGCT
GCGTGAAGGCTACTTTGGATCATGCGCGTTTTGAACCCAACTATCGGGTG
GTTGCTAGCAAAACGAAGGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCA
CGGGGCGTGGTGCAAGGACCTCCCTCACGTCCTCGCTTTGGATTGTGAGA
TGTGTGCAACCCGGGATCCGGTCAGCATGGAGCAGGATGGGAAGGCTTTG
ATCCGATTAAGTGTAGTGAGTGGGCACGATGAGAACCAGGTATTGCTTGA
CACGCTCGTCTTGCCTTCCTTGCCTGTGGTGGACTATCGCACAGACATCC
ATGGGATTCGCCCAGAGGACTTGAGAAGTGTAATGTTTACATTTAGACAT
GCTCAGGCGGCGATGCTGCATTTGTGTTGTACCGAGACTGTGCTGGTGGG
TCATGGGTTGGCCAACGATCTGACTGCTTTAAAAATGAAGCACTCCAAGG
TGGTGGACACTGCCCTTCTCTTCGAGAGGGAGGACGCGCCAAACCATACC
CCTGCATTAAAGGACGTGGCGGGTGCGTTGCTTGGCTTGGATATGCCGGA
CATGCACGATTCGGTGGCAGATGCGCAGGTCACGCTGAGAATCGCCCGAC
ACTTTTTGGAGCAGGGACCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCG
AGCAATAAGAAGGGGAGGCGGGCAGAGGCACAGCAAAGTTGCCTTTTATT
GCATCGGATTCCTCTGTATGTGAAGGCGGAACATATCTTGGAGATGTTTC
AGAGTCGGACCCATGTCATGCCTGTGGCGGTGGATCCAGTAGTGGCGACG
GGGGATGGAAGCTTGGGGAGGGCTACTGCCCGCTTTCTGTCAAAGCACCA
TGCCGATCTTGCGTTTAGTACCTTGACGGGCCCGGCTAGGCCTGATAAGG
ATGGACGGCCCCAGAAGAGGGTGCATTTGGCGGGGAAGAAGGATTATGTG
CAGGTGAGGTTGATGTACGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGG
GGAGGGAGTGGTGAAAGAGGATGCGACGTCGTCGCCGCCGGCGAAGATCT
TTTAG
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protein sequence of NO18G01060.1

>NO18G01060.1-protein ID=NO18G01060.1-protein|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MAPATLKYKLKKVEEGLAGDEKPVCAFFSLPQGCRNGAKCPFMHGEAGAA
SEERPKATPTNKTTGVTKNAQAMQQVRLQLASEQAKKRTAPAPSTPVGGA
TSTFAKRFKRQEPEEEESTEEEDEEEGEEEKVPAPPLNVIKPTVPARQVP
VPTKTAPASKKAAPVPTLSKPVGTGNTDDVMNPFLAIARPPTSAPPTQQQ
QQQQQQQQQQQQQQKKKQFPAGPATNATPVTIGNKKNNTSNTKPPPVAKT
IVPAPIAAAVAPIERRPAARVTAAALTNNKPANGNGVGMLGKISALPVTP
FTITHNHKMEMKQEEVEVEDGEVVEEGGGVEEEQHFKEEIEEEKPVGAVA
KKVKKQQQLQQQRQEEVVMEEEVCVHGESNWSCCVKATLDHARFEPNYRV
VASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKAL
IRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRH
AQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHT
PALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAA
SNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVAT
GDGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYV
QVRLMYAPGKEEGEEGGEGVVKEDATSSPPAKIF*
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Synonyms
Publications