NO18G01060.1, NO18G01060.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01060.1
Unique Name	NO18G01060.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2205
Alignment location	chr18:375411..377615 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:375411..377615 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO18G01060.1 vs.
Match: EWM23333.1 (Zinc finger, CCCH-type [Nannochloropsis gaditana])

HSP 1 Score: 625.2 bits (1611), Expect = 2.600e-175
Identity = 361/583 (61.92%), Postives = 414/583 (71.01%), Query Frame = 0

Query:  189 RPPTSAPPTQQQQQQQQQQQQQQQQQKKKQFPAGPATNATPVTIGNKKNNTSNTK--------------------PPPVAKTIVPAPIAAAV---APIERRPAARVTAAALTNNKPAN-------------GNGVGMLGKISALPVTPFTITHNHKMEMKQEEVEVEDGEVVEEGGGVEEEQHFKEEIEEEKPVGAVAKKVKKQQQLQQQRQEEVVMEEEVCVHGESNWSCCVKATLDHARFEPNYRVVASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRHAQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHTPALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAASNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVATG-DGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYVQVRLMYAPGKEEGEEGGEGVVKEDATSSPPAKIF 735
            R     P T +    ++ +++   +  K     GP    T VT  ++KNN ++T                     PPP A + +  P+AAA    AP+      R   +AL+ + P               GNGV ML K+SALPVTPFTI        + ++ E EDGE+V+ G G E E         +  VGA   +  K++  Q +      ++EEVC H  S W+ CVKAT++HARFE NYR +A++ KGE +WI AKKHGAWC+DLPHVLALDCEMCATRDPVSMEQDGKALIRLSVV GHDE QVLLDTLVLPSLPV+DYRTDIHGIRPEDLR VMFTFRHAQAAMLHLCCTETVL+GHGL NDLTALKMKHS+VVDTALLFEREDAPNHTPALKDVA ALLGLDM DMHDSVADAQVTLRIARHFL++GPVAPVPRLPAA NKKGRRAEA QSCLLLHRIP +V A HI +MFQ+RTHV PV VDPV  +G +GSLGRATARFLSK HADLAF+TLTGPARPDKDGR QKRVHLAGKKDYVQVRLMYAPG E G EG +G   E+    P AK+F
Sbjct:  106 RSKKQEPETDESTSTEEAEEEGLPRAVKAAVHIGP----TSVTAVSRKNNIASTGKPTAEPCVGHDVTNPFLAVVPPPPATSHLRQPVAAAAKRGAPVHSVQKKRGDFSALSVSVPVQPSQSASSPASPRVGNGVSMLSKLSALPVTPFTIARKPNGATRDDD-EPEDGELVQ-GEGEEGED------SAQSVVGANLSQHAKEESCQAE-----AVKEEVCFHAGSPWTGCVKATMEHARFEANYRALAAQKKGEADWIEAKKHGAWCRDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVCGHDEKQVLLDTLVLPSLPVIDYRTDIHGIRPEDLRQVMFTFRHAQAAMLHLCCTETVLIGHGLCNDLTALKMKHSRVVDTALLFEREDAPNHTPALKDVASALLGLDMADMHDSVADAQVTLRIARHFLDRGPVAPVPRLPAAPNKKGRRAEAVQSCLLLHRIPSFVTAAHIKDMFQTRTHVAPVTVDPVATSGAEGSLGRATARFLSKGHADLAFATLTGPARPDKDGRLQKRVHLAGKKDYVQVRLMYAPG-EAGHEGRDG---EEEPDLPSAKVF 667

The following BLAST results are available for this feature:

BLAST of NO18G01060.1 vs.

BLAST of NO18G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23333.1	2.600e-175	61.92	Zinc finger, CCCH-type [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01060	NO18G01060	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01060.1	NO18G01060.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01060.1.cds1	NO18G01060.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:375411..377615-
coding sequence from alignment at chr18:375411..377615-

mRNA sequence

>NO18G01060.1 ID=NO18G01060.1|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp
ATGGCCCCCGCCACCCTGAAATATAAGCTCAAAAAGGTAGAGGAGGGGCT
GGCCGGGGACGAAAAGCCGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTT
GCCGAAACGGAGCCAAGTGTCCTTTTATGCACGGGGAGGCAGGCGCCGCA
TCCGAGGAGCGGCCCAAGGCCACCCCCACAAATAAGACGACAGGTGTGAC
CAAGAACGCTCAGGCCATGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGC
AGGCTAAGAAGCGTACGGCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCC
ACCAGCACATTTGCCAAAAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGA
GTCCACCGAGGAGGAGGACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCG
CCCCACCCCTCAACGTCATCAAGCCCACAGTTCCTGCGCGACAAGTTCCT
GTGCCGACAAAAACTGCGCCTGCATCCAAAAAGGCAGCTCCTGTCCCCAC
CCTCAGCAAGCCCGTCGGCACGGGCAATACTGATGATGTGATGAATCCTT
TCCTCGCGATTGCTCGGCCTCCCACATCCGCGCCGCCCACGCAACAACAG
CAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGAAGAAGAA
GCAATTTCCTGCAGGACCGGCGACGAACGCCACCCCCGTCACCATAGGAA
ACAAGAAAAACAACACCAGTAACACCAAGCCCCCTCCTGTTGCCAAGACC
ATAGTTCCCGCTCCGATAGCGGCAGCAGTGGCTCCAATCGAACGCAGACC
TGCTGCACGTGTGACTGCCGCTGCCCTCACAAACAACAAACCCGCTAATG
GAAATGGGGTGGGGATGCTTGGGAAGATCTCTGCCTTGCCCGTCACTCCA
TTTACTATCACACACAATCACAAGATGGAAATGAAGCAGGAGGAGGTGGA
GGTGGAGGACGGAGAGGTTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAAC
AGCACTTCAAGGAGGAGATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCC
AAAAAGGTCAAGAAACAACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGT
TGTTATGGAGGAGGAGGTGTGCGTACACGGGGAGAGCAATTGGTCCTGCT
GCGTGAAGGCTACTTTGGATCATGCGCGTTTTGAACCCAACTATCGGGTG
GTTGCTAGCAAAACGAAGGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCA
CGGGGCGTGGTGCAAGGACCTCCCTCACGTCCTCGCTTTGGATTGTGAGA
TGTGTGCAACCCGGGATCCGGTCAGCATGGAGCAGGATGGGAAGGCTTTG
ATCCGATTAAGTGTAGTGAGTGGGCACGATGAGAACCAGGTATTGCTTGA
CACGCTCGTCTTGCCTTCCTTGCCTGTGGTGGACTATCGCACAGACATCC
ATGGGATTCGCCCAGAGGACTTGAGAAGTGTAATGTTTACATTTAGACAT
GCTCAGGCGGCGATGCTGCATTTGTGTTGTACCGAGACTGTGCTGGTGGG
TCATGGGTTGGCCAACGATCTGACTGCTTTAAAAATGAAGCACTCCAAGG
TGGTGGACACTGCCCTTCTCTTCGAGAGGGAGGACGCGCCAAACCATACC
CCTGCATTAAAGGACGTGGCGGGTGCGTTGCTTGGCTTGGATATGCCGGA
CATGCACGATTCGGTGGCAGATGCGCAGGTCACGCTGAGAATCGCCCGAC
ACTTTTTGGAGCAGGGACCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCG
AGCAATAAGAAGGGGAGGCGGGCAGAGGCACAGCAAAGTTGCCTTTTATT
GCATCGGATTCCTCTGTATGTGAAGGCGGAACATATCTTGGAGATGTTTC
AGAGTCGGACCCATGTCATGCCTGTGGCGGTGGATCCAGTAGTGGCGACG
GGGGATGGAAGCTTGGGGAGGGCTACTGCCCGCTTTCTGTCAAAGCACCA
TGCCGATCTTGCGTTTAGTACCTTGACGGGCCCGGCTAGGCCTGATAAGG
ATGGACGGCCCCAGAAGAGGGTGCATTTGGCGGGGAAGAAGGATTATGTG
CAGGTGAGGTTGATGTACGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGG
GGAGGGAGTGGTGAAAGAGGATGCGACGTCGTCGCCGCCGGCGAAGATCT
TTTAG

protein sequence of NO18G01060.1

>NO18G01060.1-protein ID=NO18G01060.1-protein|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MAPATLKYKLKKVEEGLAGDEKPVCAFFSLPQGCRNGAKCPFMHGEAGAA
SEERPKATPTNKTTGVTKNAQAMQQVRLQLASEQAKKRTAPAPSTPVGGA
TSTFAKRFKRQEPEEEESTEEEDEEEGEEEKVPAPPLNVIKPTVPARQVP
VPTKTAPASKKAAPVPTLSKPVGTGNTDDVMNPFLAIARPPTSAPPTQQQ
QQQQQQQQQQQQQQKKKQFPAGPATNATPVTIGNKKNNTSNTKPPPVAKT
IVPAPIAAAVAPIERRPAARVTAAALTNNKPANGNGVGMLGKISALPVTP
FTITHNHKMEMKQEEVEVEDGEVVEEGGGVEEEQHFKEEIEEEKPVGAVA
KKVKKQQQLQQQRQEEVVMEEEVCVHGESNWSCCVKATLDHARFEPNYRV
VASKTKGEGEWIAAKKHGAWCKDLPHVLALDCEMCATRDPVSMEQDGKAL
IRLSVVSGHDENQVLLDTLVLPSLPVVDYRTDIHGIRPEDLRSVMFTFRH
AQAAMLHLCCTETVLVGHGLANDLTALKMKHSKVVDTALLFEREDAPNHT
PALKDVAGALLGLDMPDMHDSVADAQVTLRIARHFLEQGPVAPVPRLPAA
SNKKGRRAEAQQSCLLLHRIPLYVKAEHILEMFQSRTHVMPVAVDPVVAT
GDGSLGRATARFLSKHHADLAFSTLTGPARPDKDGRPQKRVHLAGKKDYV
QVRLMYAPGKEEGEEGGEGVVKEDATSSPPAKIF*

mRNA from alignment at chr18:375411..377615-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01060.1 ID=NO18G01060.1|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp|location=Sequence derived from alignment at chr18:375411..377615- (Nannochloropsis oceanica)
ATGGCCCCCGCCACCCTGAAATATAAGCTCAAAAAGGTAGAGGAGGGGCT
GGCCGGGGACGAAAAGCCGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTT
GCCGAAACGGAGCCAAGTGTCCTTTTATGCACGGGGAGGCAGGCGCCGCA
TCCGAGGAGCGGCCCAAGGCCACCCCCACAAATAAGACGACAGGTGTGAC
CAAGAACGCTCAGGCCATGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGC
AGGCTAAGAAGCGTACGGCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCC
ACCAGCACATTTGCCAAAAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGA
GTCCACCGAGGAGGAGGACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCG
CCCCACCCCTCAACGTCATCAAGCCCACAGTTCCTGCGCGACAAGTTCCT
GTGCCGACAAAAACTGCGCCTGCATCCAAAAAGGCAGCTCCTGTCCCCAC
CCTCAGCAAGCCCGTCGGCACGGGCAATACTGATGATGTGATGAATCCTT
TCCTCGCGATTGCTCGGCCTCCCACATCCGCGCCGCCCACGCAACAACAG
CAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGAAGAAGAA
GCAATTTCCTGCAGGACCGGCGACGAACGCCACCCCCGTCACCATAGGAA
ACAAGAAAAACAACACCAGTAACACCAAGCCCCCTCCTGTTGCCAAGACC
ATAGTTCCCGCTCCGATAGCGGCAGCAGTGGCTCCAATCGAACGCAGACC
TGCTGCACGTGTGACTGCCGCTGCCCTCACAAACAACAAACCCGCTAATG
GAAATGGGGTGGGGATGCTTGGGAAGATCTCTGCCTTGCCCGTCACTCCA
TTTACTATCACACACAATCACAAGATGGAAATGAAGCAGGAGGAGGTGGA
GGTGGAGGACGGAGAGGTTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAAC
AGCACTTCAAGGAGGAGATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCC
AAAAAGGTCAAGAAACAACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGT
TGTTATGGAGGAGGAGGTGTGCGTACACGGGGAGAGCAATTGGTCCTGCT
GCGTGAAGGCTACTTTGGATCATGCGCGTTTTGAACCCAACTATCGGGTG
GTTGCTAGCAAAACGAAGGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCA
CGGGGCGTGGTGCAAGGACCTCCCTCACGTCCTCGCTTTGGATTGTGAGA
TGTGTGCAACCCGGGATCCGGTCAGCATGGAGCAGGATGGGAAGGCTTTG
ATCCGATTAAGTGTAGTGAGTGGGCACGATGAGAACCAGGTATTGCTTGA
CACGCTCGTCTTGCCTTCCTTGCCTGTGGTGGACTATCGCACAGACATCC
ATGGGATTCGCCCAGAGGACTTGAGAAGTGTAATGTTTACATTTAGACAT
GCTCAGGCGGCGATGCTGCATTTGTGTTGTACCGAGACTGTGCTGGTGGG
TCATGGGTTGGCCAACGATCTGACTGCTTTAAAAATGAAGCACTCCAAGG
TGGTGGACACTGCCCTTCTCTTCGAGAGGGAGGACGCGCCAAACCATACC
CCTGCATTAAAGGACGTGGCGGGTGCGTTGCTTGGCTTGGATATGCCGGA
CATGCACGATTCGGTGGCAGATGCGCAGGTCACGCTGAGAATCGCCCGAC
ACTTTTTGGAGCAGGGACCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCG
AGCAATAAGAAGGGGAGGCGGGCAGAGGCACAGCAAAGTTGCCTTTTATT
GCATCGGATTCCTCTGTATGTGAAGGCGGAACATATCTTGGAGATGTTTC
AGAGTCGGACCCATGTCATGCCTGTGGCGGTGGATCCAGTAGTGGCGACG
GGGGATGGAAGCTTGGGGAGGGCTACTGCCCGCTTTCTGTCAAAGCACCA
TGCCGATCTTGCGTTTAGTACCTTGACGGGCCCGGCTAGGCCTGATAAGG
ATGGACGGCCCCAGAAGAGGGTGCATTTGGCGGGGAAGAAGGATTATGTG
CAGGTGAGGTTGATGTACGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGG
GGAGGGAGTGGTGAAAGAGGATGCGACGTCGTCGCCGCCGGCGAAGATCT
TTTAG

Coding sequence (CDS) from alignment at chr18:375411..377615-

>NO18G01060.1 ID=NO18G01060.1|Name=NO18G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at chr18:375411..377615- (Nannochloropsis oceanica)
ATGGCCCCCGCCACCCTGAAATATAAGCTCAAAAAGGTAGAGGAGGGGCT
GGCCGGGGACGAAAAGCCGGTTTGTGCCTTCTTCTCCCTGCCACAAGGTT
GCCGAAACGGAGCCAAGTGTCCTTTTATGCACGGGGAGGCAGGCGCCGCA
TCCGAGGAGCGGCCCAAGGCCACCCCCACAAATAAGACGACAGGTGTGAC
CAAGAACGCTCAGGCCATGCAGCAAGTCCGCCTTCAGCTCGCATCGGAGC
AGGCTAAGAAGCGTACGGCTCCCGCCCCCTCGACGCCTGTTGGTGGTGCC
ACCAGCACATTTGCCAAAAGGTTTAAGCGACAGGAGCCCGAAGAGGAGGA
GTCCACCGAGGAGGAGGACGAGGAGGAAGGTGAGGAGGAAAAAGTCCCCG
CCCCACCCCTCAACGTCATCAAGCCCACAGTTCCTGCGCGACAAGTTCCT
GTGCCGACAAAAACTGCGCCTGCATCCAAAAAGGCAGCTCCTGTCCCCAC
CCTCAGCAAGCCCGTCGGCACGGGCAATACTGATGATGTGATGAATCCTT
TCCTCGCGATTGCTCGGCCTCCCACATCCGCGCCGCCCACGCAACAACAG
CAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGAAGAAGAA
GCAATTTCCTGCAGGACCGGCGACGAACGCCACCCCCGTCACCATAGGAA
ACAAGAAAAACAACACCAGTAACACCAAGCCCCCTCCTGTTGCCAAGACC
ATAGTTCCCGCTCCGATAGCGGCAGCAGTGGCTCCAATCGAACGCAGACC
TGCTGCACGTGTGACTGCCGCTGCCCTCACAAACAACAAACCCGCTAATG
GAAATGGGGTGGGGATGCTTGGGAAGATCTCTGCCTTGCCCGTCACTCCA
TTTACTATCACACACAATCACAAGATGGAAATGAAGCAGGAGGAGGTGGA
GGTGGAGGACGGAGAGGTTGTGGAAGAAGGGGGAGGGGTAGAGGAAGAAC
AGCACTTCAAGGAGGAGATAGAGGAAGAGAAGCCGGTGGGGGCGGTAGCC
AAAAAGGTCAAGAAACAACAGCAGCTTCAGCAACAGCGGCAGGAGGAAGT
TGTTATGGAGGAGGAGGTGTGCGTACACGGGGAGAGCAATTGGTCCTGCT
GCGTGAAGGCTACTTTGGATCATGCGCGTTTTGAACCCAACTATCGGGTG
GTTGCTAGCAAAACGAAGGGGGAGGGGGAGTGGATCGCAGCGAAAAAGCA
CGGGGCGTGGTGCAAGGACCTCCCTCACGTCCTCGCTTTGGATTGTGAGA
TGTGTGCAACCCGGGATCCGGTCAGCATGGAGCAGGATGGGAAGGCTTTG
ATCCGATTAAGTGTAGTGAGTGGGCACGATGAGAACCAGGTATTGCTTGA
CACGCTCGTCTTGCCTTCCTTGCCTGTGGTGGACTATCGCACAGACATCC
ATGGGATTCGCCCAGAGGACTTGAGAAGTGTAATGTTTACATTTAGACAT
GCTCAGGCGGCGATGCTGCATTTGTGTTGTACCGAGACTGTGCTGGTGGG
TCATGGGTTGGCCAACGATCTGACTGCTTTAAAAATGAAGCACTCCAAGG
TGGTGGACACTGCCCTTCTCTTCGAGAGGGAGGACGCGCCAAACCATACC
CCTGCATTAAAGGACGTGGCGGGTGCGTTGCTTGGCTTGGATATGCCGGA
CATGCACGATTCGGTGGCAGATGCGCAGGTCACGCTGAGAATCGCCCGAC
ACTTTTTGGAGCAGGGACCCGTGGCGCCTGTCCCCCGTTTACCGGCAGCG
AGCAATAAGAAGGGGAGGCGGGCAGAGGCACAGCAAAGTTGCCTTTTATT
GCATCGGATTCCTCTGTATGTGAAGGCGGAACATATCTTGGAGATGTTTC
AGAGTCGGACCCATGTCATGCCTGTGGCGGTGGATCCAGTAGTGGCGACG
GGGGATGGAAGCTTGGGGAGGGCTACTGCCCGCTTTCTGTCAAAGCACCA
TGCCGATCTTGCGTTTAGTACCTTGACGGGCCCGGCTAGGCCTGATAAGG
ATGGACGGCCCCAGAAGAGGGTGCATTTGGCGGGGAAGAAGGATTATGTG
CAGGTGAGGTTGATGTACGCGCCAGGGAAGGAGGAGGGAGAGGAAGGGGG
GGAGGGAGTGGTGAAAGAGGATGCGACGTCGTCGCCGCCGGCGAAGATCT
TTTAG

Synonyms

Publications