NO17G02790, NO17G02790 (gene) Nannochloropsis oceanica

Overview
NameNO17G02790
Unique NameNO17G02790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1611
Alignment locationchr17:810495..813377 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:810495..813377 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G02790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL159nonsL159Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|271650gene_9347Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02790.1NO17G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02790.2NO17G02790.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02790.3NO17G02790.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02790.1NO17G02790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02790.2NO17G02790.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02790.3NO17G02790.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02790 ID=NO17G02790|Name=NO17G02790|organism=Nannochloropsis oceanica|type=gene|length=1611bp
CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA
GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG
CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT
ACACGgtaagtcatgtgcccgtgtgcacatgcatgaagaccatctgtccc
tgcctctcttctcatccattctcaatcttttttctcggtcattctcgtgc
atctatttttccctcttatatgcctccgcctatggccacgcccagCCGTA
GCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTT
GGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGA
TGGAGATGAACGCCTGGTGGTCCTTGGCATGGGGGAGCCTGTGGGGGAAG
GGAGGGAAGGAAGGGGGGAGGGGCAAGGAGAGGGCGAAGGAGGGAGTGTC
GTTGACGTATACGGCTTCGTCCTCCTCGCCGTTGGCCTTGTTTGAAGAAG
AAGAGAAGGAGGACGGATGGCAGGATGGAGATGAAGGGGACGGAGGAGAG
GGGTTGGTTTGGCGGGAAGTGGAGGGGGAGGAAGGGGAGAGGAGGGAGGG
ACGATGGGTGCACAGGGGGGAGGAGGACGAAGAGGGTGAGGAGGAGGAAG
GGGACGAATGGGAAGAGGAAGCACAGTTATGGAGAATAGGCGATGAAGAC
AAGGAAGAGGAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGCTTTA
TGCGGACGAGGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTGAGGG
AGGAAGGGATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCC
GCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCT
CAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCC
TCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCC
CTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGG
GAAGGAGGGAGGAAGGAACAGGCATGAAGgtgcggaaagggcgggggggg
agggagggagagagggagggagggagggagggaagttggtgccgtgtggg
tttccgtgaaaggagcttgcttattctctctccttctctcccttcctccc
tcccttcttcccactctcccactatctcgcttacttcccgacgtcagTAT
TTCTCCGCCCCGAGGGCGAGGGTCCTCCGATTGTTGATCCCTCCATCAGC
CCGTGGCCTGTCTACAGCGGCCTACTGGGGTATTTATTCGGCGGTGGCTT
TGGAGAGAATAAATTCGTGCGCTTCTCCTCTTGGCAGGTAATTGATTATT
TCCCCTTTCTCCCTCCCTATTTCTTACCCCTCCTCGCCGCAGGCAGGCGG
AAATCAGGTTATTTGTCCTCTCTTTTTCTTCGTCCTACTACCCCCTGATC
CCTCTTCATGACATGCACACGCGCACACACACACACACACACACACACAC
ACACACACACA
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protein sequence of NO17G02790.1

>NO17G02790.1-protein ID=NO17G02790.1-protein|Name=NO17G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGKEGGRG
KERAKEGVSLTYTASSSSPLALFEEEEKEDGWQDGDEGDGGEGLVWREVE
GEEGERREGRWVHRGEEDEEGEEEEGDEWEEEAQLWRIGDEDKEEEEEEG
YLSHFGQLYADEDKAEDEQSREEVREEGMATAAPADSPPSSAAIPAGPPS
PSLLFLSALSSLSRPGSWRLYLVLFLALVLVLSTSLVVAYLSLARLLGVS
PLEGWERGGKEGGRNRHEVFLRPEGEGPPIVDPSISPWPVYSGLLGYLFG
GGFGENKFVRFSSWQTEDDGEGGGVKRVPFEAYEAITYEEGIEAEDEAED
EGEDEDGLDLDYPSDDEDEGGEWRQESLWRKRKEAEEEKEGEGKRERCRR
STLEGREREDEREAVVWRSEKVMDLDGVTGAGGNGGREAARSVAS*
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protein sequence of NO17G02790.2

>NO17G02790.2-protein ID=NO17G02790.2-protein|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MLLSYSSSTRRKRRRGRAGGRRPLSLSLTLLPCLLLLLPSTTALHAVADS
PLVAAMEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGK
EGGRGKERAKEGVSLTYTASSSSPLALFEEEEKEDGWQDGDEGDGGEGLV
WREVEGEEGERREGRWVHRGEEDEEGEEEEGDEWEEEAQLWRIGDEDKEE
EEEEGYLSHFGQLYADEDKAEDEQSREEVREEGMATAAPADSPPSSAAIP
AGPPSPSLLFLSALSSLSRPGSWRLYLVLFLALVLVLSTSLVVAYLSLAR
LLGVSPLEGWERGGKEGGRNRHEVFLRPEGEGPPIVDPSISPWPVYSGLL
GYLFGGGFGENKFVRFSSWQVIDYFPFLPPYFLPLLAAGRRKSGYLSSLF
LRPTTP*
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protein sequence of NO17G02790.3

>NO17G02790.3-protein ID=NO17G02790.3-protein|Name=NO17G02790.3|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MLLSYSSSTRRKRRRGRAGGRRPLSLSLTLLPCLLLLLPSTTALHAVADS
PLVAAMEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGK
EGGRGKERAKEGVSLTYTASSSSPLALFEEEEKEDGWQDGDEGDGGEGLV
WREVEGEEGERREGRWVHRGEEDEEGEEEEGDEWEEEAQLWRIGDEDKEE
EEEEGYLSHFGQLYADEDKAEDEQSREEVREEGMATAAPADSPPSSAAIP
AGPPSPSLLFLSALSSLSRPGSWRLYLVLFLALVLVLSTSLVVAYLSLAR
LLGVSPLEGWERGGKEGGRNRHEVFLRPEGEGPPIVDPSISPWPVYSGLL
GYLFGGGFGENKFVRFSSWQTEDDGEGGGVKRVPFEAYEAITYEEGIEAE
DEAEDEGEDEDGLDLDYPSDDEDEGGEWRQESLWRKRKEAEEEKEGEGKR
ERCRRSTLEGREREDEREAVVWRSEKVMDLDGVTGAGGNGGREAARSVAS
*
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Synonyms
Publications