NO17G02790.2, NO17G02790.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02790.2
Unique NameNO17G02790.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1303
Alignment locationchr17:811118..812728 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:811118..812728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02790.2 vs.
Match: XP_005854919.1 (hypothetical protein NGA_0380700, partial [Nannochloropsis gaditana CCMP526]; EKU21442.1 hypothetical protein NGA_0380700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.1 bits (183), Expect = 5.600e-10
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 0 
Query:   51 PLVAAMEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGKEGGRGKERAKEGV--SLTYTASSSSPLALFEEEEKEDGWQDGDEGD 145
            P+ A+  G    G+  GG E W+HA+ V+R+EM A WSL W   WG+G +EG  G    KE V  +LTYT +  S LA+ EEEE+E+GW    EG+
Sbjct:   13 PIAASEIGTGVDGVVTGGGEAWQHALGVLRVEMQALWSLTWKQYWGRGKREGKYGMRSDKEKVQGALTYT-TLLSELAMEEEEEEEEGWDQDWEGE 107
The following BLAST results are available for this feature:
BLAST of NO17G02790.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854919.15.600e-1045.83hypothetical protein NGA_0380700, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02790NO17G02790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02790.2NO17G02790.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02790.2.cds1NO17G02790.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02790.2.cds2NO17G02790.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02790.2.cds3NO17G02790.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02790.2 ID=NO17G02790.2|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp
CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA
GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG
CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT
ACACGCCGTAGCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGG
AGGGAGGGTTGGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGG
GTCATGCGGATGGAGATGAACGCCTGGTGGTCCTTGGCATGGGGGAGCCT
GTGGGGGAAGGGAGGGAAGGAAGGGGGGAGGGGCAAGGAGAGGGCGAAGG
AGGGAGTGTCGTTGACGTATACGGCTTCGTCCTCCTCGCCGTTGGCCTTG
TTTGAAGAAGAAGAGAAGGAGGACGGATGGCAGGATGGAGATGAAGGGGA
CGGAGGAGAGGGGTTGGTTTGGCGGGAAGTGGAGGGGGAGGAAGGGGAGA
GGAGGGAGGGACGATGGGTGCACAGGGGGGAGGAGGACGAAGAGGGTGAG
GAGGAGGAAGGGGACGAATGGGAAGAGGAAGCACAGTTATGGAGAATAGG
CGATGAAGACAAGGAAGAGGAGGAAGAGGAGGGGTATCTCTCCCACTTCG
GCCAGCTTTATGCGGACGAGGACAAGGCCGAGGACGAGCAAAGTAGGGAG
GAAGTGAGGGAGGAAGGGATGGCGACAGCAGCACCCGCAGACTCCCCCCC
TTCCTCTGCCGCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTC
TCTCTGCCCTCAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTC
GTCCTCTTCCTCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGC
CTACTTATCCCTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGG
AGCGAGGGGGGAAGGAGGGAGGAAGGAACAGGCATGAAGTATTTCTCCGC
CCCGAGGGCGAGGGTCCTCCGATTGTTGATCCCTCCATCAGCCCGTGGCC
TGTCTACAGCGGCCTACTGGGGTATTTATTCGGCGGTGGCTTTGGAGAGA
ATAAATTCGTGCGCTTCTCCTCTTGGCAGGTAATTGATTATTTCCCCTTT
CTCCCTCCCTATTTCTTACCCCTCCTCGCCGCAGGCAGGCGGAAATCAGG
TTATTTGTCCTCTCTTTTTCTTCGTCCTACTACCCCCTGATCCCTCTTCA
TGACATGCACACGCGCACACACACACACACACACACACACACACACACAC
ACA
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protein sequence of NO17G02790.2

>NO17G02790.2-protein ID=NO17G02790.2-protein|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MLLSYSSSTRRKRRRGRAGGRRPLSLSLTLLPCLLLLLPSTTALHAVADS
PLVAAMEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGK
EGGRGKERAKEGVSLTYTASSSSPLALFEEEEKEDGWQDGDEGDGGEGLV
WREVEGEEGERREGRWVHRGEEDEEGEEEEGDEWEEEAQLWRIGDEDKEE
EEEEGYLSHFGQLYADEDKAEDEQSREEVREEGMATAAPADSPPSSAAIP
AGPPSPSLLFLSALSSLSRPGSWRLYLVLFLALVLVLSTSLVVAYLSLAR
LLGVSPLEGWERGGKEGGRNRHEVFLRPEGEGPPIVDPSISPWPVYSGLL
GYLFGGGFGENKFVRFSSWQVIDYFPFLPPYFLPLLAAGRRKSGYLSSLF
LRPTTP*
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mRNA from alignment at chr17:811118..812728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02790.2 ID=NO17G02790.2|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp|location=Sequence derived from alignment at chr17:811118..812728+ (Nannochloropsis oceanica)
CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA
GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG
CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT
ACACGGTAAGTCATGTGCCCGTGTGCACATGCATGAAGACCATCTGTCCC
TGCCTCTCTTCTCATCCATTCTCAATCTTTTTTCTCGGTCATTCTCGTGC
ATCTATTTTTCCCTCTTATATGCCTCCGCCTATGGCCACGCCCAGCCGTA
GCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTT
GGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGA
TGGAGATGAACGCCTGGTGGTCCTTGGCATGGGGGAGCCTGTGGGGGAAG
GGAGGGAAGGAAGGGGGGAGGGGCAAGGAGAGGGCGAAGGAGGGAGTGTC
GTTGACGTATACGGCTTCGTCCTCCTCGCCGTTGGCCTTGTTTGAAGAAG
AAGAGAAGGAGGACGGATGGCAGGATGGAGATGAAGGGGACGGAGGAGAG
GGGTTGGTTTGGCGGGAAGTGGAGGGGGAGGAAGGGGAGAGGAGGGAGGG
ACGATGGGTGCACAGGGGGGAGGAGGACGAAGAGGGTGAGGAGGAGGAAG
GGGACGAATGGGAAGAGGAAGCACAGTTATGGAGAATAGGCGATGAAGAC
AAGGAAGAGGAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGCTTTA
TGCGGACGAGGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTGAGGG
AGGAAGGGATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCC
GCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCT
CAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCC
TCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCC
CTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGG
GAAGGAGGGAGGAAGGAACAGGCATGAAGGTGCGGAAAGGGCGGGGGGGG
AGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAAGTTGGTGCCGTGTGGG
TTTCCGTGAAAGGAGCTTGCTTATTCTCTCTCCTTCTCTCCCTTCCTCCC
TCCCTTCTTCCCACTCTCCCACTATCTCGCTTACTTCCCGACGTCAGTAT
TTCTCCGCCCCGAGGGCGAGGGTCCTCCGATTGTTGATCCCTCCATCAGC
CCGTGGCCTGTCTACAGCGGCCTACTGGGGTATTTATTCGGCGGTGGCTT
TGGAGAGAATAAATTCGTGCGCTTCTCCTCTTGGCAGGTAATTGATTATT
TCCCCTTTCTCCCTCCCTATTTCTTACCCCTCCTCGCCGCAGGCAGGCGG
AAATCAGGTTATTTGTCCTCTCTTTTTCTTCGTCCTACTACCCCCTGATC
CCTCTTCATGACATGCACACGCGCACACACACACACACACACACACACAC
ACACACACACA
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Coding sequence (CDS) from alignment at chr17:811118..812728+

>NO17G02790.2 ID=NO17G02790.2|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr17:811118..812728+ (Nannochloropsis oceanica)
ATGCTGCTGTCGTACAGCAGCAGTACCAGGAGGAAGAGAAGGAGAGGGCG
CGCTGGCGGTCGGCGCCCGCTGTCATTGTCGCTTACCCTCCTCCCTTGCC
TTCTCCTTCTCCTTCCCAGCACGACAGCACTACACGCCGTAGCAGACAGT
CCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTTGGAGGGAGG
AGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGATGGAGATGA
ACGCCTGGTGGTCCTTGGCATGGGGGAGCCTGTGGGGGAAGGGAGGGAAG
GAAGGGGGGAGGGGCAAGGAGAGGGCGAAGGAGGGAGTGTCGTTGACGTA
TACGGCTTCGTCCTCCTCGCCGTTGGCCTTGTTTGAAGAAGAAGAGAAGG
AGGACGGATGGCAGGATGGAGATGAAGGGGACGGAGGAGAGGGGTTGGTT
TGGCGGGAAGTGGAGGGGGAGGAAGGGGAGAGGAGGGAGGGACGATGGGT
GCACAGGGGGGAGGAGGACGAAGAGGGTGAGGAGGAGGAAGGGGACGAAT
GGGAAGAGGAAGCACAGTTATGGAGAATAGGCGATGAAGACAAGGAAGAG
GAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGCTTTATGCGGACGA
GGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTGAGGGAGGAAGGGA
TGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCCGCCATCCCC
GCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCTCAGCAGCCT
CTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCCTCGCCCTCG
TCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCCCTAGCTCGG
CTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGGGAAGGAGGG
AGGAAGGAACAGGCATGAAGTATTTCTCCGCCCCGAGGGCGAGGGTCCTC
CGATTGTTGATCCCTCCATCAGCCCGTGGCCTGTCTACAGCGGCCTACTG
GGGTATTTATTCGGCGGTGGCTTTGGAGAGAATAAATTCGTGCGCTTCTC
CTCTTGGCAGGTAATTGATTATTTCCCCTTTCTCCCTCCCTATTTCTTAC
CCCTCCTCGCCGCAGGCAGGCGGAAATCAGGTTATTTGTCCTCTCTTTTT
CTTCGTCCTACTACCCCCTGA
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Synonyms
Publications