Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr17 genome chr17:811118..812728 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02790.2 vs.
Match: XP_005854919.1 (hypothetical protein NGA_0380700, partial [Nannochloropsis gaditana CCMP526]; EKU21442.1 hypothetical protein NGA_0380700, partial [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 75.1 bits (183), Expect = 5.600e-10
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 0
Query: 51 PLVAAMEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGKEGGRGKERAKEGV--SLTYTASSSSPLALFEEEEKEDGWQDGDEGD 145
P+ A+ G G+ GG E W+HA+ V+R+EM A WSL W WG+G +EG G KE V +LTYT + S LA+ EEEE+E+GW EG+
Sbjct: 13 PIAASEIGTGVDGVVTGGGEAWQHALGVLRVEMQALWSLTWKQYWGRGKREGKYGMRSDKEKVQGALTYT-TLLSELAMEEEEEEEEGWDQDWEGE 107
The following BLAST results are available for this feature:
BLAST of NO17G02790.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 Expect = 5.60e-10 / Id = 45.83 Sequence XP_005854919.1
Match Name E-value Identity Description
XP_005854919.1 5.600e-10 45.83 hypothetical protein NGA_0380700, partial [Nannoch... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO17G02790.2 ID=NO17G02790.2|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT ACACGCCGTAGCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGG AGGGAGGGTTGGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGG GTCATGCGGATGGAGATGAACGCCTGGTGGTCCTTGGCATGGGGGAGCCT GTGGGGGAAGGGAGGGAAGGAAGGGGGGAGGGGCAAGGAGAGGGCGAAGG AGGGAGTGTCGTTGACGTATACGGCTTCGTCCTCCTCGCCGTTGGCCTTG TTTGAAGAAGAAGAGAAGGAGGACGGATGGCAGGATGGAGATGAAGGGGA CGGAGGAGAGGGGTTGGTTTGGCGGGAAGTGGAGGGGGAGGAAGGGGAGA GGAGGGAGGGACGATGGGTGCACAGGGGGGAGGAGGACGAAGAGGGTGAG GAGGAGGAAGGGGACGAATGGGAAGAGGAAGCACAGTTATGGAGAATAGG CGATGAAGACAAGGAAGAGGAGGAAGAGGAGGGGTATCTCTCCCACTTCG GCCAGCTTTATGCGGACGAGGACAAGGCCGAGGACGAGCAAAGTAGGGAG GAAGTGAGGGAGGAAGGGATGGCGACAGCAGCACCCGCAGACTCCCCCCC TTCCTCTGCCGCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTC TCTCTGCCCTCAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTC GTCCTCTTCCTCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGC CTACTTATCCCTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGG AGCGAGGGGGGAAGGAGGGAGGAAGGAACAGGCATGAAGTATTTCTCCGC CCCGAGGGCGAGGGTCCTCCGATTGTTGATCCCTCCATCAGCCCGTGGCC TGTCTACAGCGGCCTACTGGGGTATTTATTCGGCGGTGGCTTTGGAGAGA ATAAATTCGTGCGCTTCTCCTCTTGGCAGGTAATTGATTATTTCCCCTTT CTCCCTCCCTATTTCTTACCCCTCCTCGCCGCAGGCAGGCGGAAATCAGG TTATTTGTCCTCTCTTTTTCTTCGTCCTACTACCCCCTGATCCCTCTTCA TGACATGCACACGCGCACACACACACACACACACACACACACACACACAC ACA back to top protein sequence of NO17G02790.2
>NO17G02790.2-protein ID=NO17G02790.2-protein|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp MLLSYSSSTRRKRRRGRAGGRRPLSLSLTLLPCLLLLLPSTTALHAVADS PLVAAMEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGK EGGRGKERAKEGVSLTYTASSSSPLALFEEEEKEDGWQDGDEGDGGEGLV WREVEGEEGERREGRWVHRGEEDEEGEEEEGDEWEEEAQLWRIGDEDKEE EEEEGYLSHFGQLYADEDKAEDEQSREEVREEGMATAAPADSPPSSAAIP AGPPSPSLLFLSALSSLSRPGSWRLYLVLFLALVLVLSTSLVVAYLSLAR LLGVSPLEGWERGGKEGGRNRHEVFLRPEGEGPPIVDPSISPWPVYSGLL GYLFGGGFGENKFVRFSSWQVIDYFPFLPPYFLPLLAAGRRKSGYLSSLF LRPTTP* back to top mRNA from alignment at chr17:811118..812728+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02790.2 ID=NO17G02790.2|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp|location=Sequence derived from alignment at chr17:811118..812728+ (Nannochloropsis oceanica) CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA
GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG
CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT
ACACG GTAAGTCATGTGCCCGTGTGCACATGCATGAAGACCATCTGTCCC
TGCCTCTCTTCTCATCCATTCTCAATCTTTTTTCTCGGTCATTCTCGTGC
ATCTATTTTTCCCTCTTATATGCCTCCGCCTATGGCCACGCCCAGCCGTA
GCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTT
GGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGA
TGGAGATGAACGCCTGGTGGTCCTTGGCATGGGGGAGCCTGTGGGGGAAG
GGAGGGAAGGAAGGGGGGAGGGGCAAGGAGAGGGCGAAGGAGGGAGTGTC
GTTGACGTATACGGCTTCGTCCTCCTCGCCGTTGGCCTTGTTTGAAGAAG
AAGAGAAGGAGGACGGATGGCAGGATGGAGATGAAGGGGACGGAGGAGAG
GGGTTGGTTTGGCGGGAAGTGGAGGGGGAGGAAGGGGAGAGGAGGGAGGG
ACGATGGGTGCACAGGGGGGAGGAGGACGAAGAGGGTGAGGAGGAGGAAG
GGGACGAATGGGAAGAGGAAGCACAGTTATGGAGAATAGGCGATGAAGAC
AAGGAAGAGGAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGCTTTA
TGCGGACGAGGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTGAGGG
AGGAAGGGATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCC
GCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCT
CAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCC
TCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCC
CTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGG
GAAGGAGGGAGGAAGGAACAGGCATGAAG GTGCGGAAAGGGCGGGGGGGG
AGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAAGTTGGTGCCGTGTGGG
TTTCCGTGAAAGGAGCTTGCTTATTCTCTCTCCTTCTCTCCCTTCCTCCC
TCCCTTCTTCCCACTCTCCCACTATCTCGCTTACTTCCCGACGTCAGTAT
TTCTCCGCCCCGAGGGCGAGGGTCCTCCGATTGTTGATCCCTCCATCAGC
CCGTGGCCTGTCTACAGCGGCCTACTGGGGTATTTATTCGGCGGTGGCTT
TGGAGAGAATAAATTCGTGCGCTTCTCCTCTTGGCAGGTAATTGATTATT
TCCCCTTTCTCCCTCCCTATTTCTTACCCCTCCTCGCCGCAGGCAGGCGG
AAATCAGGTTATTTGTCCTCTCTTTTTCTTCGTCCTACTACCCCCTGA TC
CCTCTTCATGACATGCACACGCGCACACACACACACACACACACACACAC
ACACACACACA back to top Coding sequence (CDS) from alignment at chr17:811118..812728+
>NO17G02790.2 ID=NO17G02790.2|Name=NO17G02790.2|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr17:811118..812728+ (Nannochloropsis oceanica) ATGCTGCTGTCGTACAGCAGCAGTACCAGGAGGAAGAGAAGGAGAGGGCG CGCTGGCGGTCGGCGCCCGCTGTCATTGTCGCTTACCCTCCTCCCTTGCC TTCTCCTTCTCCTTCCCAGCACGACAGCACTACACGCCGTAGCAGACAGT CCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTTGGAGGGAGG AGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGATGGAGATGA ACGCCTGGTGGTCCTTGGCATGGGGGAGCCTGTGGGGGAAGGGAGGGAAG GAAGGGGGGAGGGGCAAGGAGAGGGCGAAGGAGGGAGTGTCGTTGACGTA TACGGCTTCGTCCTCCTCGCCGTTGGCCTTGTTTGAAGAAGAAGAGAAGG AGGACGGATGGCAGGATGGAGATGAAGGGGACGGAGGAGAGGGGTTGGTT TGGCGGGAAGTGGAGGGGGAGGAAGGGGAGAGGAGGGAGGGACGATGGGT GCACAGGGGGGAGGAGGACGAAGAGGGTGAGGAGGAGGAAGGGGACGAAT GGGAAGAGGAAGCACAGTTATGGAGAATAGGCGATGAAGACAAGGAAGAG GAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGCTTTATGCGGACGA GGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTGAGGGAGGAAGGGA TGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCCGCCATCCCC GCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCTCAGCAGCCT CTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCCTCGCCCTCG TCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCCCTAGCTCGG CTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGGGAAGGAGGG AGGAAGGAACAGGCATGAAGTATTTCTCCGCCCCGAGGGCGAGGGTCCTC CGATTGTTGATCCCTCCATCAGCCCGTGGCCTGTCTACAGCGGCCTACTG GGGTATTTATTCGGCGGTGGCTTTGGAGAGAATAAATTCGTGCGCTTCTC CTCTTGGCAGGTAATTGATTATTTCCCCTTTCTCCCTCCCTATTTCTTAC CCCTCCTCGCCGCAGGCAGGCGGAAATCAGGTTATTTGTCCTCTCTTTTT CTTCGTCCTACTACCCCCTGA back to top