NO17G02790.3, NO17G02790.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G02790.3
Unique Name	NO17G02790.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1715
Alignment location	chr17:811118..813377 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:811118..813377 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G02790.3 vs.
Match: XP_005854919.1 (hypothetical protein NGA_0380700, partial [Nannochloropsis gaditana CCMP526]; EKU21442.1 hypothetical protein NGA_0380700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.1 bits (183), Expect = 6.900e-10
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 0

Query:   51 PLVAAMEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGKEGGRGKERAKEGV--SLTYTASSSSPLALFEEEEKEDGWQDGDEGD 145
            P+ A+  G    G+  GG E W+HA+ V+R+EM A WSL W   WG+G +EG  G    KE V  +LTYT +  S LA+ EEEE+E+GW    EG+
Sbjct:   13 PIAASEIGTGVDGVVTGGGEAWQHALGVLRVEMQALWSLTWKQYWGRGKREGKYGMRSDKEKVQGALTYT-TLLSELAMEEEEEEEEGWDQDWEGE 107

The following BLAST results are available for this feature:

BLAST of NO17G02790.3 vs.

BLAST of NO17G02790.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005854919.1	6.900e-10	45.83	hypothetical protein NGA_0380700, partial [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02790	NO17G02790	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02790.3	NO17G02790.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02790.3.cds1	NO17G02790.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02790.3.cds2	NO17G02790.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02790.3.cds3	NO17G02790.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02790.3.cds4	NO17G02790.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:811118..813377+
coding sequence from alignment at chr17:811118..813377+

mRNA sequence

>NO17G02790.3 ID=NO17G02790.3|Name=NO17G02790.3|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp
CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA
GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG
CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT
ACACGCCGTAGCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGG
AGGGAGGGTTGGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGG
GTCATGCGGATGGAGATGAACGCCTGGTGGTCCTTGGCATGGGGGAGCCT
GTGGGGGAAGGGAGGGAAGGAAGGGGGGAGGGGCAAGGAGAGGGCGAAGG
AGGGAGTGTCGTTGACGTATACGGCTTCGTCCTCCTCGCCGTTGGCCTTG
TTTGAAGAAGAAGAGAAGGAGGACGGATGGCAGGATGGAGATGAAGGGGA
CGGAGGAGAGGGGTTGGTTTGGCGGGAAGTGGAGGGGGAGGAAGGGGAGA
GGAGGGAGGGACGATGGGTGCACAGGGGGGAGGAGGACGAAGAGGGTGAG
GAGGAGGAAGGGGACGAATGGGAAGAGGAAGCACAGTTATGGAGAATAGG
CGATGAAGACAAGGAAGAGGAGGAAGAGGAGGGGTATCTCTCCCACTTCG
GCCAGCTTTATGCGGACGAGGACAAGGCCGAGGACGAGCAAAGTAGGGAG
GAAGTGAGGGAGGAAGGGATGGCGACAGCAGCACCCGCAGACTCCCCCCC
TTCCTCTGCCGCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTC
TCTCTGCCCTCAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTC
GTCCTCTTCCTCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGC
CTACTTATCCCTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGG
AGCGAGGGGGGAAGGAGGGAGGAAGGAACAGGCATGAAGTATTTCTCCGC
CCCGAGGGCGAGGGTCCTCCGATTGTTGATCCCTCCATCAGCCCGTGGCC
TGTCTACAGCGGCCTACTGGGGTATTTATTCGGCGGTGGCTTTGGAGAGA
ATAAATTCGTGCGCTTCTCCTCTTGGCAGACGGAGGATGATGGGGAGGGA
GGGGGGGTCAAACGTGTGCCCTTCGAGGCTTATGAGGCAATCACCTACGA
GGAAGGGATCGAGGCCGAGGACGAGGCCGAGGACGAGGGCGAGGACGAGG
ACGGATTGGATCTCGATTATCCGAGTGATGATGAGGACGAGGGGGGGGAG
TGGCGGCAGGAGAGTCTCTGGAGGAAAAGGAAGGAAGCCGAGGAAGAAAA
GGAAGGGGAGGGCAAGAGGGAGAGATGTCGAAGATCCACGTTAGAGGGGA
GGGAGAGGGAGGATGAGAGGGAGGCAGTGGTTTGGAGAAGTGAGAAGGTA
ATGGACCTAGATGGGGTGACAGGGGCAGGTGGCAATGGAGGGAGGGAAGC
GGCCAGGAGCGTCGCGAGCTAGAAAGCGATCGAATCAGAGGATAGATATG
CGAGATGGTATGTCCTTATGGATGTGGGAGGAGGTAAAAAATATAGTCCA
AAGACGGCGCCGAATAGCGCCAGAGTGAGGGGGGGGAGTGAGGAGAAAGA
GTTTCCTTGGGCATGTGGTGCAACTCTGACATAAATTACTGATCTGATGA
AGAGTAAAATGGAGA

protein sequence of NO17G02790.3

>NO17G02790.3-protein ID=NO17G02790.3-protein|Name=NO17G02790.3|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MLLSYSSSTRRKRRRGRAGGRRPLSLSLTLLPCLLLLLPSTTALHAVADS
PLVAAMEGGMEGGLEGGGAEEWEHAVRVMRMEMNAWWSLAWGSLWGKGGK
EGGRGKERAKEGVSLTYTASSSSPLALFEEEEKEDGWQDGDEGDGGEGLV
WREVEGEEGERREGRWVHRGEEDEEGEEEEGDEWEEEAQLWRIGDEDKEE
EEEEGYLSHFGQLYADEDKAEDEQSREEVREEGMATAAPADSPPSSAAIP
AGPPSPSLLFLSALSSLSRPGSWRLYLVLFLALVLVLSTSLVVAYLSLAR
LLGVSPLEGWERGGKEGGRNRHEVFLRPEGEGPPIVDPSISPWPVYSGLL
GYLFGGGFGENKFVRFSSWQTEDDGEGGGVKRVPFEAYEAITYEEGIEAE
DEAEDEGEDEDGLDLDYPSDDEDEGGEWRQESLWRKRKEAEEEKEGEGKR
ERCRRSTLEGREREDEREAVVWRSEKVMDLDGVTGAGGNGGREAARSVAS
*

mRNA from alignment at chr17:811118..813377+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G02790.3 ID=NO17G02790.3|Name=NO17G02790.3|organism=Nannochloropsis oceanica|type=mRNA|length=2260bp|location=Sequence derived from alignment at chr17:811118..813377+ (Nannochloropsis oceanica)
CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA
GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG
CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT
ACACGGTAAGTCATGTGCCCGTGTGCACATGCATGAAGACCATCTGTCCC
TGCCTCTCTTCTCATCCATTCTCAATCTTTTTTCTCGGTCATTCTCGTGC
ATCTATTTTTCCCTCTTATATGCCTCCGCCTATGGCCACGCCCAGCCGTA
GCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTT
GGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGA
TGGAGATGAACGCCTGGTGGTCCTTGGCATGGGGGAGCCTGTGGGGGAAG
GGAGGGAAGGAAGGGGGGAGGGGCAAGGAGAGGGCGAAGGAGGGAGTGTC
GTTGACGTATACGGCTTCGTCCTCCTCGCCGTTGGCCTTGTTTGAAGAAG
AAGAGAAGGAGGACGGATGGCAGGATGGAGATGAAGGGGACGGAGGAGAG
GGGTTGGTTTGGCGGGAAGTGGAGGGGGAGGAAGGGGAGAGGAGGGAGGG
ACGATGGGTGCACAGGGGGGAGGAGGACGAAGAGGGTGAGGAGGAGGAAG
GGGACGAATGGGAAGAGGAAGCACAGTTATGGAGAATAGGCGATGAAGAC
AAGGAAGAGGAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGCTTTA
TGCGGACGAGGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTGAGGG
AGGAAGGGATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCC
GCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCT
CAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCC
TCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCC
CTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGG
GAAGGAGGGAGGAAGGAACAGGCATGAAGGTGCGGAAAGGGCGGGGGGGG
AGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAAGTTGGTGCCGTGTGGG
TTTCCGTGAAAGGAGCTTGCTTATTCTCTCTCCTTCTCTCCCTTCCTCCC
TCCCTTCTTCCCACTCTCCCACTATCTCGCTTACTTCCCGACGTCAGTAT
TTCTCCGCCCCGAGGGCGAGGGTCCTCCGATTGTTGATCCCTCCATCAGC
CCGTGGCCTGTCTACAGCGGCCTACTGGGGTATTTATTCGGCGGTGGCTT
TGGAGAGAATAAATTCGTGCGCTTCTCCTCTTGGCAGGTAATTGATTATT
TCCCCTTTCTCCCTCCCTATTTCTTACCCCTCCTCGCCGCAGGCAGGCGG
AAATCAGGTTATTTGTCCTCTCTTTTTCTTCGTCCTACTACCCCCTGATC
CCTCTTCATGACATGCACACGCGCACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACATAC
ACATACACATACACATACACACAGACGGAGGATGATGGGGAGGGAGGGGG
GGTCAAACGTGTGCCCTTCGAGGCTTATGAGGCAATCACCTACGAGGAAG
GGATCGAGGCCGAGGACGAGGCCGAGGACGAGGGCGAGGACGAGGACGGA
TTGGATCTCGATTATCCGAGTGATGATGAGGACGAGGGGGGGGAGTGGCG
GCAGGAGAGTCTCTGGAGGAAAAGGAAGGAAGCCGAGGAAGAAAAGGAAG
GGGAGGGCAAGAGGGAGAGATGTCGAAGATCCACGTTAGAGGGGAGGGAG
AGGGAGGATGAGAGGGAGGCAGTGGTTTGGAGAAGTGAGAAGGTAATGGA
CCTAGATGGGGTGACAGGGGCAGGTGGCAATGGAGGGAGGGAAGCGGCCA
GGAGCGTCGCGAGCTAGAAAGCGATCGAATCAGAGGATAGATATGCGAGA
TGGTATGTCCTTATGGATGTGGGAGGAGGTAAAAAATATAGTCCAAAGAC
GGCGCCGAATAGCGCCAGAGTGAGGGGGGGGAGTGAGGAGAAAGAGTTTC
CTTGGGCATGTGGTGCAACTCTGACATAAATTACTGATCTGATGAAGAGT
AAAATGGAGA

Coding sequence (CDS) from alignment at chr17:811118..813377+

>NO17G02790.3 ID=NO17G02790.3|Name=NO17G02790.3|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr17:811118..813377+ (Nannochloropsis oceanica)
ATGCTGCTGTCGTACAGCAGCAGTACCAGGAGGAAGAGAAGGAGAGGGCG
CGCTGGCGGTCGGCGCCCGCTGTCATTGTCGCTTACCCTCCTCCCTTGCC
TTCTCCTTCTCCTTCCCAGCACGACAGCACTACACGCCGTAGCAGACAGT
CCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTTGGAGGGAGG
AGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGATGGAGATGA
ACGCCTGGTGGTCCTTGGCATGGGGGAGCCTGTGGGGGAAGGGAGGGAAG
GAAGGGGGGAGGGGCAAGGAGAGGGCGAAGGAGGGAGTGTCGTTGACGTA
TACGGCTTCGTCCTCCTCGCCGTTGGCCTTGTTTGAAGAAGAAGAGAAGG
AGGACGGATGGCAGGATGGAGATGAAGGGGACGGAGGAGAGGGGTTGGTT
TGGCGGGAAGTGGAGGGGGAGGAAGGGGAGAGGAGGGAGGGACGATGGGT
GCACAGGGGGGAGGAGGACGAAGAGGGTGAGGAGGAGGAAGGGGACGAAT
GGGAAGAGGAAGCACAGTTATGGAGAATAGGCGATGAAGACAAGGAAGAG
GAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGCTTTATGCGGACGA
GGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTGAGGGAGGAAGGGA
TGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCCGCCATCCCC
GCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCTCAGCAGCCT
CTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCCTCGCCCTCG
TCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCCCTAGCTCGG
CTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGGGAAGGAGGG
AGGAAGGAACAGGCATGAAGTATTTCTCCGCCCCGAGGGCGAGGGTCCTC
CGATTGTTGATCCCTCCATCAGCCCGTGGCCTGTCTACAGCGGCCTACTG
GGGTATTTATTCGGCGGTGGCTTTGGAGAGAATAAATTCGTGCGCTTCTC
CTCTTGGCAGACGGAGGATGATGGGGAGGGAGGGGGGGTCAAACGTGTGC
CCTTCGAGGCTTATGAGGCAATCACCTACGAGGAAGGGATCGAGGCCGAG
GACGAGGCCGAGGACGAGGGCGAGGACGAGGACGGATTGGATCTCGATTA
TCCGAGTGATGATGAGGACGAGGGGGGGGAGTGGCGGCAGGAGAGTCTCT
GGAGGAAAAGGAAGGAAGCCGAGGAAGAAAAGGAAGGGGAGGGCAAGAGG
GAGAGATGTCGAAGATCCACGTTAGAGGGGAGGGAGAGGGAGGATGAGAG
GGAGGCAGTGGTTTGGAGAAGTGAGAAGGTAATGGACCTAGATGGGGTGA
CAGGGGCAGGTGGCAATGGAGGGAGGGAAGCGGCCAGGAGCGTCGCGAGC
TAG

Synonyms

Publications