NO17G02220, NO17G02220 (gene) Nannochloropsis oceanica

Overview
NameNO17G02220
Unique NameNO17G02220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4621
Alignment locationchr17:646332..650952 +

Link to JBrowse

Properties
Property NameValue
DescriptionPaired amphipathic helix protein sin3b
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:646332..650952 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:1903507negative regulation of nucleic acid-templated transcription
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR036600PAH_sf
IPR003822PAH
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003714transcription corepressor activity
Homology
BLAST of NO17G02220 vs. NCBI_GenBank
Match: EWM24187.1 (paired amphipathic helix protein sin3b [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 9.200e-62
Identity = 224/550 (40.73%), Postives = 284/550 (51.64%), Query Frame = 0
Query:  249 IMQDALAYLELVQLTFRDRLDIYLTFLGVMRDFAAGTIDTAGVVSCISQLFQGQEALLRGFHNFLNGFSRADPVTSS------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKMKDAVMFMDLVKDVLKDRPEIYMQFLDVIQRFQEQRIDTPSL------IIEKEXXXXXXXXXXXXXXXXXXXXNG----------------------------DLQKNGAIKYMEQVQEIFGSQSDTYLEFLAVMKGFEAEQLSIGEVMGRVVGLFQDHEELLEGFKCFLPSEQRRHLAAXXXXXXXXPDPATGKEEGGAISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPGRSMPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGSNPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKGEXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFLPQRVQKDL 741
            +MQ+ALAYLELVQ TF  + DIY +FL VMR+   G  DT  +   +S+LFQGQ++LLRGF +FL+G    DP   S                         XXXXXXXXXXXXX                        V M+DAV++MD VK    D+PE Y +FL++I+ FQ++  DT  +      I +                       G                              Q  GAI++ +QV+  F +Q   YLEFL VM+ F+  ++ IGEVM RV  +FQDH  LL+GF  FLP + R  + AXXXXXXXX     G EE    +DAL +MDRVR +F   PEVYVAFL +M+ FQ   L T GV++EVGRLF G + LL+GFNAFLP G  MP                 XXXXXXXXXXXXXXXXXXXXXX             A  F++ V+ RFA++PA+YQTFLEVLQR E   ++G                   +A+TV ELF G++DLL +F  FLP  V+  L
Sbjct:   75 LMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLPGARXXXXXXXXXXXXXXXXXXXXXXXXAQMQGAIEFTDQVRATFQNQPGVYLEFLRVMRAFQGGEMGIGEVMKRVGRMFQDHPSLLDGFNRFLPPQYR--MPAXXXXXXXXAGGWEGGEEDVGEADALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFLPHGYRMP-SVPPSAPPFQRPSPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDVEFAANFIENVRNRFAADPARYQTFLEVLQRHEEEGKEG------------GLAETEQLAKTVSELFRGHEDLLKDFAHFLPGPVRAAL 609          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: EWM24186.1 (paired amphipathic helix protein sin3b [Nannochloropsis gaditana])

HSP 1 Score: 246.9 bits (629), Expect = 3.500e-61
Identity = 261/734 (35.56%), Postives = 332/734 (45.23%), Query Frame = 0
Query:   65 RGRDIPTGAPPVYQRLAFAGPLGLPPRTGSSGLSSLLSNPNTFKNFPSSFGVAGNSIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTFAMPGNSWGGLSKHPPFAPHTLPVPVPSSQXXXXXXXXXXXXXXXXXXXXXHPLVATAPVPNXXXXXXXXXXXXXXXXXXXFQLPIMQDALAYLELVQLTFRDRLDIYLTFLGVMRDFAAGTIDTAGVVSCISQLFQGQEALLRGFHNFLNGFSRADPVTSS------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKMKDAVMFMDLVKDVLKDRPEIYMQFLDVIQRFQEQRIDTPSL------IIEKEXXXXXXXXXXXXXXXXXXXXNG----------------------------DLQKNGAIKYMEQVQEIFGSQSDTYLEFLAVMKGFEAEQLSIGEVMGRVVGLFQDHEELLEGFKCFLPSEQRRHLAAXXXXXXXXPDPATGKEEGGAISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPGRSMPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGSNPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKGEXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFLPQRVQKDL 741
            R RD+P GAPPVYQR +  G  GL    G  G++SL +NPN+     SS    G   GS                                      +  + PG  W    +  P   ++LP   PS                        P     P                          +MQ+ALAYLELVQ TF  + DIY +FL VMR+   G  DT  +   +S+LFQGQ++LLRGF +FL+G    DP   S                         XXXXXXXXXXXXX                        V M+DAV++MD VK    D+PE Y +FL++I+ FQ++  DT  +      I +                       G                              Q  GAI++ +QV+  F +Q   YLEFL VM+ F+  ++ IGEVM RV  +FQDH  LL+GF  FLP + R  + AXXXXXXXX     G EE    +DAL +MDRVR +F   PEVYVAFL +M+ FQ   L T GV++EVGRLF G + LL+GFNAFLP G  MP                 XXXXXXXXXXXXXXXXXXXXXX             A  F++ V+ RFA++PA+YQTFLEVLQR E   ++G                   +A+TV ELF G++DLL +F  FLP  V+  L
Sbjct:   46 RPRDMPVGAPPVYQRPSLTG-AGLFTSAG-GGMASLFANPNSSLPAASS-NFQGLYSGS--------------------------------NAHLMNNNASKPGQDW---HRGLPPPSYSLPYNAPS------------------------PAFPGRP------------------SMPPSHAALMQNALAYLELVQRTFAHQPDIYASFLSVMREHKEGRRDTPNLCVQVSRLFQGQDSLLRGFQDFLSGIHAVDPPLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGNGTRPPLQTGVTEGGGEAKEDVSMEDAVLYMDRVKSAYADKPETYARFLEIIKSFQDELPDTARVLEAVTQIFQGRDDLIQGFNCFLPAAHRLPPPKGLPGARXXXXXXXXXXXXXXXXXXXXXXXXAQMQGAIEFTDQVRATFQNQPGVYLEFLRVMRAFQGGEMGIGEVMKRVGRMFQDHPSLLDGFNRFLPPQYR--MPAXXXXXXXXAGGWEGGEEDVGEADALDFMDRVRSTFTARPEVYVAFLEVMRGFQAGALRTEGVMQEVGRLFAGEEALLRGFNAFLPHGYRMP-SVPPSAPPFQRPSPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDVEFAANFIENVRNRFAADPARYQTFLEVLQRHEEEGKEG------------GLAETEQLAKTVSELFRGHEDLLKDFAHFLPGPVRAAL 684          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: XP_007363323.1 (hypothetical protein DICSQDRAFT_178900 [Dichomitus squalens LYAD-421 SS1] >EJF63605.1 hypothetical protein DICSQDRAFT_178900 [Dichomitus squalens LYAD-421 SS1])

HSP 1 Score: 107.1 bits (266), Expect = 4.300e-19
Identity = 76/234 (32.48%), Postives = 104/234 (44.44%), Query Frame = 0
Query:  520 PDPATGKEEGGAISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPG-------RSMPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGSNPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKG-EXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFLP-QRVQK-DLARI 744
            P+   G E    +SDAL Y+D V++ F   PEVY  FL+IMK F+++L+DT GVIE V  LF G+  L+QGFN FLP G        + P                                       P       E   PA+ FVQK++ R+A++PA YQ FL+ L       +                    G+V   + +L     DL+ +F  FLP +RVQK +LARI
Sbjct:   68 PEQQGGGERPLNVSDALSYLDSVKLQFAEQPEVYNKFLDIMKDFKSQLIDTPGVIERVSNLFHGHPALIQGFNTFLPAGYRIETGDNADPNTITVTTPAGTTTQATNAAFKYGKQQTVTERVAETVNPEPEAPVVSQESLKPALEFVQKLRTRYANQPAVYQRFLKTLAESGNQGQSDISRMESWSVACLSARYPKGEVMTEIMDLLKDSPDLMRDFVQFLPDERVQKEELARI 301          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: PIL27770.1 (transporter [Ganoderma sinense ZZ0214-1])

HSP 1 Score: 106.3 bits (264), Expect = 7.400e-19
Identity = 75/234 (32.05%), Postives = 104/234 (44.44%), Query Frame = 0
Query:  520 PDPATGKEEGGAISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPG-------RSMPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGSNPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKG-EXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFLP-QRVQK-DLARI 744
            P+   G +    +SDAL Y+D V++ F   PEVY  FL+IMK F+++L+DT GVIE V  LF G+  L+QGFN FLP G        + P                                       P       E   PA+ FVQK++ R+A++PA YQ FL+ L       +                    G+V   + +L     DL+ +F  FLP +RVQK +LARI
Sbjct:   61 PEQQGGGDRPLNVSDALSYLDSVKLQFADQPEVYNKFLDIMKDFKSQLIDTPGVIERVSNLFHGHPALIQGFNTFLPAGYRIETGDNADPNTITVTTPAGTTTQATNAAFKYGKQQTVTERVAELVNSEPEAPVVSQESLKPALEFVQKLRTRYANQPAVYQRFLKTLAESGNQGQSDISRMESWSVACLSARYPKGEVMTEIMDLLKDSPDLMRDFVQFLPDERVQKEELARI 294          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: EMD34640.1 (hypothetical protein CERSUDRAFT_116814 [Gelatoporia subvermispora B])

HSP 1 Score: 104.4 bits (259), Expect = 2.800e-18
Identity = 75/241 (31.12%), Postives = 107/241 (44.40%), Query Frame = 0
Query:  520 PDPATGKEEGGA-----ISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPGRSMPF------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGS---NPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKG-EXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFL--PQRVQKDLARI 744
            P P +    G +     ++DAL Y+D V++ F   P+VY  FL+IMK F+++L+DT GVIE V  LF G+  L+QGFN FLP G  +        P                                     P + EA    S    PA+ FVQKVK R+A++P +Y+ FLE+L     +                      GDV + V  LF    +L+ EF  FL  PQ  + +LA++
Sbjct:   83 PQPISEVSSGASERPLNVTDALSYLDSVKMQFQDNPDVYNRFLDIMKDFKSQLIDTPGVIERVSNLFHGHPMLIQGFNTFLPAGYRIECTTDTKNPNFITVTTPMGTTTQATNSFAFGTSLAGTAFANIPRSQPLLSEADSSASVNVAPALSFVQKVKTRYANDPDRYKRFLEILYSSTALPSNDVRDMEHWSVAYLSAYYAQGDVVQNVRSLFHDAPELMREFTEFLPDPQTREAELAKL 323          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: KZT66663.1 (hypothetical protein DAEQUDRAFT_730074 [Daedalea quercina L-15889])

HSP 1 Score: 104.0 bits (258), Expect = 3.700e-18
Identity = 69/222 (31.08%), Postives = 101/222 (45.50%), Query Frame = 0
Query:  532 ISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPGRSMPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGS-------NPAIVFVQKVKERFASEPAKYQTFLEVLQRRE--IVDEKGEXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFLPQRVQKDLARIK 745
            ++DAL Y+D V++ F   PEVY  FL+IMK F+++++DT GVIE V  LF G+  L+QGFN FLP G  +                                        P  +E     S        PA+ ++Q+VK R+A+EP KY+ FLE+L  +    V E  E                G+V + + +LF     L+ +F  FLP R  K++   K
Sbjct:   71 VTDALTYLDSVKLKFQDNPEVYNRFLDIMKDFKSQIIDTPGVIERVSNLFHGHPTLIQGFNTFLPAGYRIDCTTDAQNPNSITVTTPAGITTQTTHGTFAFGGSSTRPDVPPEIERVPVPSPVPDVNLEPALAYIQRVKTRYANEPEKYRRFLEILNPKTGGGVSELRE-LEHWAVAFLSAGYAQGEVVQRLGKLFSDAPSLMKDFIEFLPDRHMKEVELAK 291          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: OBZ89321.1 (Paired amphipathic helix protein pst1 [Choanephora cucurbitarum])

HSP 1 Score: 104.0 bits (258), Expect = 3.700e-18
Identity = 76/239 (31.80%), Postives = 107/239 (44.77%), Query Frame = 0
Query:  522 PATGKEEGGAISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPGRSMPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGSNP-------------AIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKGEXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFLP----QRVQKDLARI 744
            P+T ++    + DAL Y+D+V+  F    +VY  FL+IMK F+++++DT GVIE V  LF+G+  L+ GFN FLPPG  +                                        P+   +  + SNP             AI +V K+K RFA+ P  Y+ FLE+LQ  +  D+K                    V   V ELF G D+LL+EF  FLP    QR +K L  I
Sbjct:  469 PSTLEQRPLNVKDALSYLDKVKAKFATQADVYSRFLDIMKDFKSQIIDTPGVIERVSALFQGHPTLISGFNTFLPPGYRIECSLDAQDQQMITVTTPSGITCIRDNETLILSSPTNATAQPT---SDSQTSNPPKKSSRSPIEFNQAITYVNKIKSRFANRPETYKKFLEILQTYQ-KDQK----------------PIEQVYAEVKELFDGSDELLEEFKQFLPDPNKQRNRKRLGNI 687          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: XP_007394231.1 (hypothetical protein PHACADRAFT_172101 [Phanerochaete carnosa HHB-10118-sp] >EKM56381.1 hypothetical protein PHACADRAFT_172101 [Phanerochaete carnosa HHB-10118-sp])

HSP 1 Score: 103.6 bits (257), Expect = 4.800e-18
Identity = 71/216 (32.87%), Postives = 100/216 (46.30%), Query Frame = 0
Query:  532 ISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPGRSM--PFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGSNPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKGEXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFLPQR--VQKDLARI 744
            ++DALGY+D V+ +F    +VY  FL+IMK F+++ +DT GVIE V  LFRGY  L+QGFN FLP G  +                                          P  V+A  +    A+ +VQ+VK R+A++P KY+ FLE+L   E+  E                    DV   V  LF   +DL+  F  FLP R   Q+ +AR+
Sbjct:    7 VTDALGYLDCVKQTFADQSDVYNRFLDIMKDFKSQFIDTPGVIERVSTLFRGYPTLIQGFNTFLPAGYRIECTTDGDNSDLITVTTPAGTTTQAIREPFPRPSMLGDVVIAAPGAVDA-EQDIERALAYVQRVKNRYANDPQKYKAFLEILSPDELAGE--------------------DVLLRVERLFKADEDLMKGFYQFLPDRNLQQRTVARL 201          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: XP_002840086.1 (hypothetical protein [Tuber melanosporum Mel28] >CAZ84277.1 unnamed protein product [Tuber melanosporum])

HSP 1 Score: 103.6 bits (257), Expect = 4.800e-18
Identity = 65/203 (32.02%), Postives = 93/203 (45.81%), Query Frame = 0
Query:  532 ISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPGRSMPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVVEAGGEGSNPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKGEXXXXXXXXXXXXXXXXGDVARTVCELFGGYDDLLDEFCLFLPQ 735
            + DAL Y+D+V+  F   P+VY  FL+IMK F+++ +DT GVI+ V  LF G+  L+QGFN FLPPG  +                                         + + AG    N AI +V K+K RFA +P  Y+ FLE+LQ  +   +  +                 DV   V +LF    DLL++F  FLP+
Sbjct:  210 VKDALSYLDQVKFQFQDQPDVYNKFLDIMKDFKSQTIDTPGVIDRVSTLFSGHPSLIQGFNTFLPPGYRIECSQDPRDTKITVTTPSGIHHAASGGEVSIGGDRSGMQLNTAPLAAGPVEFNHAISYVNKIKNRFAQQPDIYKNFLEILQTYQRESKPIQ-----------------DVYSQVTQLFHSAPDLLEDFKQFLPE 395          
BLAST of NO17G02220 vs. NCBI_GenBank
Match: KDQ53793.1 (hypothetical protein JAAARDRAFT_39096 [Jaapia argillacea MUCL 33604])

HSP 1 Score: 103.6 bits (257), Expect = 4.800e-18
Identity = 64/187 (34.22%), Postives = 90/187 (48.13%), Query Frame = 0
Query:  452 FGSQSDTYLEFLAVMKGFEAEQLSIGEVMGRVVGLFQDHEELLEGFKCFLPSEQRRH------------------------------------LAAXXXXXXXXPDPATG---KEEGGA-ISDALGYMDRVRVSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPG 599
            F    D + +FL +MKGF++E +    V+ RV  LF  H+ L++GF  FLP   R                                      + A        P P T    +E GG  + DAL Y+D V++ F   P+V   FL+IMKAF+++++DT GVIE V  LF G+ +L+QGFN FLP G
Sbjct:    3 FFDNPDVFNQFLDIMKGFKSEIIDTPGVVERVSTLFHGHQSLIQGFNTFLPVGYRIECGVNAQDASFITVTTPSGTTTQSGNRPLVLPTGNPVVPARSSMPTIDPSPNTSSETREPGGVNVIDALSYLDAVKMQFFDNPDVSNQFLDIMKAFKSQIIDTPGVIERVSTLFHGHPNLIQGFNTFLPVG 189          
The following BLAST results are available for this feature:
BLAST of NO17G02220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24187.19.200e-6240.73paired amphipathic helix protein sin3b [Nannochlor... [more]
EWM24186.13.500e-6135.56paired amphipathic helix protein sin3b [Nannochlor... [more]
XP_007363323.14.300e-1932.48hypothetical protein DICSQDRAFT_178900 [Dichomitus... [more]
PIL27770.17.400e-1932.05transporter [Ganoderma sinense ZZ0214-1][more]
EMD34640.12.800e-1831.12hypothetical protein CERSUDRAFT_116814 [Gelatopori... [more]
KZT66663.13.700e-1831.08hypothetical protein DAEQUDRAFT_730074 [Daedalea q... [more]
OBZ89321.13.700e-1831.80Paired amphipathic helix protein pst1 [Choanephora... [more]
XP_007394231.14.800e-1832.87hypothetical protein PHACADRAFT_172101 [Phanerocha... [more]
XP_002840086.14.800e-1832.02hypothetical protein [Tuber melanosporum Mel28] >C... [more]
KDQ53793.14.800e-1834.22hypothetical protein JAAARDRAFT_39096 [Jaapia argi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003007NSK003007Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02220.1NO17G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|165523gene_7664Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100390g3gene6283Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02220.1NO17G02220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02220 ID=NO17G02220|Name=NO17G02220|organism=Nannochloropsis oceanica|type=gene|length=4621bp
AAACTTTCAAATAGGTCAATCCATTTCGCGGTCAGGAAGCCAGAAGGAGC
GAGTCTTCGAGACGTTCAGGGGCCTCGCTATTTGCTACCCCTTCCCTCCT
GCGCGCCCCGTTCCTCCTTCCCCTACCTTGCACCATGGACCGGTTTGGCA
ACCACCCCCAGAATGGCCCTGGCCTTGGCGATCACCTCAACGCTAGCGCT
GCCAGCGGTGGAGGTGGGAACGATCCGCATATGTACCACCAGCGGCATCT
ACTGCAGCAGCAGCACCACCACCACCACCAGCATCACCAGCATCACCATC
AACATCCTCACCCTTCCTCAATGCCTCGGGGCCGGGACATTCCGACGGGA
GCACCACCTGTATACCAACgtgagtcaagcggggagaatgagctagtgat
ggaagtaggaaagtagggaaggaggaagggagggtagggaaggagaggcg
acggttgaattctgcattcactagctcatgcgccataaaattatatgaat
gaagagtcacttcgaattacaaagtactgatcctgtatcatcaccctccc
ttctccctctccctttcttcttctgcacatacaatcacagGCCTTGCATT
CGCAGGACCTTTGGGCCTACCACCCAGGACAGGAAGCAGCGGCTTGAGCT
CTCTCCTTTCAAACCCGAACACTTTCAAAAACTTCCCTTCTTCTTTCGGG
GTTGCCGGCAATAGCATTGGCTCCAGTATGGACAGCAATACTAGCAACTA
CACCAGCGGAAGCAGCGTTGGTGACGACCGCGGCGGCGGCGGCGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAAGAAGTACTTTTGCC
ATGCCCGGCAACAGCTGGGGAGGCCTCTCCAAACACCCCCCCTTCGCCCC
GCACACCCTCCCTGTACCCGTTCCTTCTTCTCAAGCTCCCCCTCCTCCGC
ATTCCTCCTTCATTGCTTCTTTCCGCTCTGCTCCTCCTCCTACCTCTCAC
CCCTTAGTCGCCACTGCCCCTGTTCCGAATTCTCTTCCTTCTTCTACCTC
CTCCTCCTCCTCCTCCTCCTCCTCTTCAATTACCTCCTTCCAGCTCCCCA
TCATGCAGGATGCTCTCGCCTACCTCGAGCTCGTCCAGCTTACTTTCCGT
GACCGTCTTGACATTTATTTGACCTTTTTGGGCGTTATGCGAGATTTCGC
CGCAGGGACTATCGACACCGCGGGCGTTGTGTCGTGCATCTCGCAGCTCT
TCCAAGGACAAGAGGCCCTGCTGAGAGGCTTCCACAATTTCTTGAACGGT
TTTTCCCGAGCCGATCCAGTCACATCCTCGGCTGCTGGTGCCGTTGATGC
GGCTGCTGCGGCGGGTTCGCAAATGCTTGGAGTGGGTGGTGGTATTAATG
GTAACAAGCACGAGGGAGGAGGAGGAGGGGGAGGAAGAGGGCAAGTGAAG
ATGAAGGACGCAGTTATGTTCATGGATCTTGTCAAAGACGTCCTGAAGGA
TCGTCCCGAGgtatgtcctccctccctccctcccttccgccctccctccc
acccaccctccctccctcattccttatgtttctgtcgtccaagaccagcc
cttggagccccccaaagcgtaatttctccactcacccctcctcccccccc
ctccttccttccttccctgtccctagATCTACATGCAGTTCCTCGACGTC
ATCCAGCGTTTCCAAGAACAGCGCATCGACACCCCCAGTCTGATCATgtc
cgtgactaccctctttcgaggctacgactccctccttgaagggttcagtt
ccttcattcccggcggccagggaacgtctctgactgcctaccccccttcc
ttccctcccccccccctccctcgtgtccatcctcgagTGAGAAGGAGCAG
GGGCTGGGGCTGGCGCAGGCAGAGAAGAAGGAGAAGGAGAAGGAGGAGAA
CGACGAAAACGGGGACCTCCAGAAGAATGGAGCAATAAAATACATGGAAC
AGGTGCAGGAAATCTTCGGGAGCCAGTCTGACACCTACCTTGAGTTCTTG
GCCGTCATGAAGGGCTTTGAGGCGGAGCAGCTTAGCATAGGGGAGGTTAT
GGGGAGGGTGGTGGGTCTCTTTCAAGACCACGAGGAACTTTTGGAGGGCT
TCAAATGCTTCTTGCCGTCGGAACAGAGGAGGCATCTCGCTGCTGCTGCA
GCTGCGACTGCCTCTGATCCTGATCCTGCGACGGGGAAAGAGGAGGGAGG
AGCGATATCGGACGCGCTGGGTTACATGGACCGTGTTCGCGTCTCTTTCT
TGGGCACACCCGAAGTCTACGTGGCTTTTTTAAACATAATGAAGGCCTTT
CAAACGGAGCTCTTGGACACCCGGGGCGTAATTGAGGAGGTAGGGCGGCT
CTTTCGAGGCTACGACGACCTCCTGCAAGGGTTTAATGCCTTCCTCCCGC
CGGGCCGCAGCATGCCTTTCCCCCCCTCCCCCTCCACCACCACCACCACC
ACCGCTGCCGCCGGAGCAGCGACAACATCAGCAGCAGCAGCCGCAGCAGT
AGCAGAAGCAGCGTCGGTGGTTCCACCGGCCATGCCTTCCGTCGTCGAGG
CGGGAGGGGAGGGGTCGAATCCCGCCATCGTCTTTGTCCAGAAAGTGAAG
GAGCGCTTCGCCTCCGAGCCGGCCAAATACCAGACATTTTTGGAGGTCCT
GCAGCGACGCGAGATAGTGGACGAGAAAGGGGAGGAGGAAGGGGGGGCTG
GTAGTGGTGGCAGTGAAGCGGGAGGGAAGGAGGGGGATGTGGCGCGAACG
GTGTGTGAATTGTTTGGCGGATACGACGATTTACTGGATGAATTTTGCCT
GTTTCTGCCTCAGCGAGTCCAAAAGGACCTGGCTCGAATCAAGGGTAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGATCGGAGGAGGAGCCGGAGGAG
GCGATGGCCATGGCACAGGGGTTCTTGCAGCGGATGCAGGAGTGGTTGGC
GAAGGAGGAGGGGGCCGAGGAAAAGTACGCTATGCTCTTGGAAGTGCTGC
AGTCTTTTCAGGGAAGAACGATGGGGGCTGAGGAGGCGATGGAGAAGGTG
AAGACATTATTGAGGGTGGAGGAAGGGGGGGAAGGAGGGGGCGACAAGGA
GGGGTTGGCGCTATGGGAGGAATTTGGGCGATTCTTGCCGGCCGTGGGAG
AGGAGGGGATGGAGGGAGGGACGGAGGAAGGACAGGGGAAGGAGCAGCAG
GAGGAAGAGGTGAGGAAGGTGATTGCGATGGTAAGGGAGTGGGGCGGAAG
GAAGGAAGGAAGGAAGGAGGGAGGGAAGGAGGCGGGAGAGCGGTTGGTGA
AGGCATTGGAGGGGCTTATGCAGGAGGAGGGAAAGGCGGACGGGAGGCAG
AGATGGAGGGAGGAAGTGGAGAGGGTGGCAGCTGAAGTTCTCCAAGGGAG
AAGAAGGCAGGAGGAAGCGCTCAGGAGGGCCGTGGCTGCTGTCGTACAGG
AGTTTGGGAAGGAGGGAGGGAAGAAGGGAGGGAAGAAGGAAGGGGAAGAT
GGAGAAATAGAAGTGGTTGCGGCGTCGGCGGCGGCGAGGAAGAAGGACGA
GAGGGAGGGAGGGAAGGAGGAAGAAGAGGAGGAAGAGGAGCTGGATGATG
AATTGATTATCCATGATGACGACTTGAGCGAGGACGAGGAAGCGAAAGAG
GGAGGGGGGAAGAGCGGAGGGGAGAGTGGGAAGAAGGAGGAGTCTGGGAC
TATCATGGAGGGTGTTAAAAAGAAGGGTAAGGACGCTCCGGCTCCAGTAG
CAGCAGCAGCAGAAGTTGTAGCAGCAGTAGCATTAACAACCTGCAGCAGC
AGTAACAGCACGAGCGAGCGAAGCAGCAGCAACAGCACCAGAAACGTGAC
AGGGATAGAGGTGAAGGATGGCGAGATGGTACTGGCGGTGAAGACAGAAG
GGGGAAAGGACGAAAAGGAGGAGAAAGAGGCGTCAGCAGCAGCAGCAACA
TCACTACCAGCAGCATTATCACCGAGGGCGGCTATGGAGACGGTGAATAA
TGACGCAGAGGAGAAGGAGGGAACGAGTAAGGAGTCACCAACAGCTGCAG
CAACAGCAGCAGCAGCAGTACCAGCACCACTGGCAGCAGCGAAAGGGCAA
AAGAAAGACGAGGGTCAGGAGAAAGAGGCGGAGGAGAAGGAGAAGAAGGA
ACAGGGAGGCAAGCGTTCTATCCTTCCTCCTGCCTCTTCCCCTTCTTCCG
TCTTGACTTCCAACGCCCGGAGTGCGCCCCCATCCTCCCTCTCTCCCTCC
CTCCCGTCGTCGACCGCAAGCCCTCTCCCGTCGGCGACGCATAAACGAGC
ACTCGAAGAACTGAATTGCAATGAGGGCGTTGATAGTCAGAGCAGCAGCC
GCGCCAGCAGTAGTACCAGCAGCAGCATCAATCAGGGACAGGATAAGGGC
CTGTCGCCTGGGGAGGTATCTCATCTTCCCCCCCAAAAAAAACGAGCGCG
CGAAGACGGTGCGGACAAGGAGAAAGAGAAGGAGGGAGAGAAGGGAAAAG
GGATGGGAGTGGGGAGAAAGGGTAGTGATACGCCGCCAATGGTACTGTCG
AGCTCCCAGGCTTTTCTTTGA
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protein sequence of NO17G02220.1

>NO17G02220.1-protein ID=NO17G02220.1-protein|Name=NO17G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1320bp
MDRFGNHPQNGPGLGDHLNASAASGGGGNDPHMYHQRHLLQQQHHHHHQH
HQHHHQHPHPSSMPRGRDIPTGAPPVYQRLAFAGPLGLPPRTGSSGLSSL
LSNPNTFKNFPSSFGVAGNSIGSSMDSNTSNYTSGSSVGDDRGGGGGGGG
GGGGGGGGGGRSTFAMPGNSWGGLSKHPPFAPHTLPVPVPSSQAPPPPHS
SFIASFRSAPPPTSHPLVATAPVPNSLPSSTSSSSSSSSSSITSFQLPIM
QDALAYLELVQLTFRDRLDIYLTFLGVMRDFAAGTIDTAGVVSCISQLFQ
GQEALLRGFHNFLNGFSRADPVTSSAAGAVDAAAAAGSQMLGVGGGINGN
KHEGGGGGGGRGQVKMKDAVMFMDLVKDVLKDRPEIYMQFLDVIQRFQEQ
RIDTPSLIIEKEQGLGLAQAEKKEKEKEENDENGDLQKNGAIKYMEQVQE
IFGSQSDTYLEFLAVMKGFEAEQLSIGEVMGRVVGLFQDHEELLEGFKCF
LPSEQRRHLAAAAAATASDPDPATGKEEGGAISDALGYMDRVRVSFLGTP
EVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNAFLPPGRS
MPFPPSPSTTTTTTAAAGAATTSAAAAAAVAEAASVVPPAMPSVVEAGGE
GSNPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKGEEEGGAGSGG
SEAGGKEGDVARTVCELFGGYDDLLDEFCLFLPQRVQKDLARIKGREGGR
EGGREGSEEEPEEAMAMAQGFLQRMQEWLAKEEGAEEKYAMLLEVLQSFQ
GRTMGAEEAMEKVKTLLRVEEGGEGGGDKEGLALWEEFGRFLPAVGEEGM
EGGTEEGQGKEQQEEEVRKVIAMVREWGGRKEGRKEGGKEAGERLVKALE
GLMQEEGKADGRQRWREEVERVAAEVLQGRRRQEEALRRAVAAVVQEFGK
EGGKKGGKKEGEDGEIEVVAASAAARKKDEREGGKEEEEEEEELDDELII
HDDDLSEDEEAKEGGGKSGGESGKKEESGTIMEGVKKKGKDAPAPVAAAA
EVVAAVALTTCSSSNSTSERSSSNSTRNVTGIEVKDGEMVLAVKTEGGKD
EKEEKEASAAAATSLPAALSPRAAMETVNNDAEEKEGTSKESPTAAATAA
AAVPAPLAAAKGQKKDEGQEKEAEEKEKKEQGGKRSILPPASSPSSVLTS
NARSAPPSSLSPSLPSSTASPLPSATHKRALEELNCNEGVDSQSSSRASS
STSSSINQGQDKGLSPGEVSHLPPQKKRAREDGADKEKEKEGEKGKGMGV
GRKGSDTPPMVLSSSQAFL*
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Synonyms
Publications