jgi.p|Nanoce1779_2|165523, gene_7664 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|165523
Unique Name	gene_7664
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_21:12951..17745 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	165609
ProteinId	165523
Product name	hypothetical protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:12951..17745 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL035	ncniL035	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02220	NO17G02220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|165523	mRNA_7664-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|165523	mRNA_7664	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|165523

>mRNA_7664-protein ID=mRNA_7664-protein|Name=jgi.p|Nanoce1779_2|165523|organism=Nannochloropsis oceanica|type=polypeptide|length=1327bp
MDRFGNHPQNGPGLGDHLNASAASGGGGNDPHMYHQRHLLQQQHHHHHQH
HQHHHQHPHPSSMPRGRDIPTGAPPVYQRLAFAGPLGLPPRTGSSGLSSL
LSNPNTFKNFPSSFGVAGNSIGSSMDSNTSNYTSGSSVGDDRGGGGGGGG
GGGGGGGGGGGRSTFAMPGNSWGGLSKHPPFAPHTLPVPVPSSQAPPPPH
SSFIASFRSAPPPTSHPLVATAPVPNSLPSSTSSSSSSSSSSSITSFQLP
IMQDALAYLELVQLTFRDRLDIYLTFLGVMRDFAAGTIDTAGVVSCISQL
FQGQEALLRGFHNFLNGFSRADPVTSSAAGAVDAAAAAGSQMLGVGGGIN
GNKHEGGGGGGGRGQVKMKDAVMFMDLVKDVLKDRPEIYMQFLDVIQRFQ
EQRIDTPSLIMCPSSSEKEQGLGLAQAEKKEKEKEENDENGDLQKNGAIK
YMEQVQEIFGSQSDTYLEFLAVMKGFEAEQLSIGEVMGRVVGLFQDHEEL
LEGFKCFLPSEQRRHLAAAAAATASDPDPATGKEEGGAISDALGYMDRVR
VSFLGTPEVYVAFLNIMKAFQTELLDTRGVIEEVGRLFRGYDDLLQGFNA
FLPPGRSMPFPPSPSTTTTTTAAAGAATTSAAAAAAVAEAASVVPPAMPS
VVEAGGEGSNPAIVFVQKVKERFASEPAKYQTFLEVLQRREIVDEKGEEE
GGAGSGGSEAGGKEGDVARTVCELFGGYDDLLDEFCLFLPQRVQKDLARI
KGREGGREGGREGSEEEPEEAMAMAQGFLQRMQEWLAKEEGAEEKYAMLL
EVLQSFQGRTMGAEEAMEKVKTLLRVEEGGEGGGDKEGLALWEEFGRFLP
AVGEEGMEGGTEEGQGKEQQEEEVRKVIAMVREWGGRKEGRKEGGKEAGE
RLVKALEGLMQEEGKADGRQRWREEVERVAAEVLQGRRRQEEALRRAVAA
VVQEFGKEGGKKGGKKEGEDGEIEVVAASAAARKKDEREGGKEEEEEEEE
LDDELIIHDDDLSEDEEAKEGGGKSGGESGKKEESGTIMEGVKKKGKDAP
APVAAAAEVVAAVALTTCSSSNSTSERSSSNSTRNVTGIEVKDGEMVLAV
KTEGGKDEKEEKEASAAAATSLPAALSPRAAMETVNNDAEEKEGTSKESP
TAAATAAAAVPAPLAAAKGQKKDEGQEKEAEEKEKKEQGGKRSILPPASS
PSSVLTSNARSAPPSSLSPSLPSSTASPLPSATHKRALEELNCNEGVDSQ
SSSRASSSTSSSINQGQDKGLSPGEVSHLPPQKKRAREDGADKEKEKEGE
KGKGMGVGRKGSDTPPMVLSSSQAFL*

Synonyms

Publications