NO17G01290, NO17G01290 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G01290
Unique Name	NO17G01290
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1786
Alignment location	chr17:397184..398969 -

Link to JBrowse

Properties


Property Name	Value
Description	DNA-(apurinic or apyrimidinic site) lyase

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:397184..398969 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004518	nuclease activity
GO:0005488	binding
GO:0004518	nuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0006950	response to stress

Vocabulary: **INTERPRO**
Term	Definition
IPR036691	Endo/exonu/phosph_ase_sf
IPR004808	AP_endonuc_1
IPR005135	Endo/exonuclease/phosphatase

Homology

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: WP_063242641.1 (exodeoxyribonuclease III [Bdellovibrio bacteriovorus] >KYG70902.1 exodeoxyribonuclease III [Bdellovibrio bacteriovorus])

HSP 1 Score: 144.4 bits (363), Expect = 9.500e-31
Identity = 101/286 (35.31%), Postives = 151/286 (52.80%), Query Frame = 0

Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGW-FTYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISKEGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNLVADMKEDMH--MEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKASDHMPVMVELE 284
            +KI+SWNV  + A      ++KG M  F++    DI C QETK  + QV  +         GW +++WS     GY G+ATF   +P AV    + +        E   EGR++++DHG F L+N+Y PN GG G  R  FK++FL+ L   ++E +++  R+VV+VGD N+  D   D+H  +   K  G     R WF   LE G ++DTFR   P E   YS++D   T  R +N+G+RIDYI +S   E+ +          + +L   + SDH PV+  L+
Sbjct:   17 VKIVSWNVNGIRAC-----YKKGLM-DFVNAEKPDIFCVQETKAHIDQVEIETRKL-----GWEYSFWSSATKKGYSGVATFVHQDPQAVQFHFDSIP-------EYEAEGRIVMSDHGAFDLYNIYFPN-GGSGEERHGFKQKFLKDLNIHLKE-KMKTGRQVVVVGDYNVAHD-NIDVHDPVRLSKVSGFLPEERAWFDSFLELG-FIDTFRYFKPSEAKRYSWWD-MRTFGRVSNKGWRIDYICISKGLEKYLS--------SADILDQVQGSDHCPVVATLD 271

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: AHZ83879.1 (exodeoxyribonuclease III [Bdellovibrio bacteriovorus])

HSP 1 Score: 143.7 bits (361), Expect = 1.600e-30
Identity = 105/289 (36.33%), Postives = 150/289 (51.90%), Query Frame = 0

Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGW-FTYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISK---EGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNLVADMKEDMH--MEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKASDHMPVMVELE 284
            MKIISWNV  + A      H+KG +  F++    DI C QETK  + QV  +          W  +YWS     GY G+ATF   EP +V           E G+ IS+   EGR++++DHG F L+N+Y PN GG G  R  FK++FL+ L   ++E ++   R+VV+VGD N VA    D+H  +   K  G     R WF   ++ G ++DTFR   P E   YS++D Y    R +N G+RIDYI +S   E+ +          + +L   + SDH PV+  L+
Sbjct:    1 MKIISWNVNGIRAC-----HKKG-LLDFVNREKPDIFCIQETKAHIDQVENELKKLT-----WNHSYWSSAVKKGYSGVATFVNEEPKSV-----------EYGWGISEYESEGRIIISDHGPFDLYNIYFPN-GGSGDVRHNFKQQFLKDLNHHLKE-KLATGRQVVVVGDYN-VAHEAIDVHDPVRLSKVSGFFPEERAWFDSFVDLG-FIDTFRYFKPSEAKRYSWWD-YRQMARISNRGWRIDYICVSKGLEKYL--------ASADILDQVEGSDHCPVVATLD 254

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: PLX23595.1 (exodeoxyribonuclease III [Ignavibacteria bacterium])

HSP 1 Score: 143.7 bits (361), Expect = 1.600e-30
Identity = 98/289 (33.91%), Postives = 147/289 (50.87%), Query Frame = 0

Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGWFTYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISKEGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNLV---ADMKEDMHMEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPE---ETMPKITKAEVLGSGVLRSNKASDHMPVMVELE 284
            M+++SWNV  + A        K +   +L++ + DI+C QETK    Q+ +     L+   G++TYW  G+  GY G+ATF K  P AV    +++         +  EGR+L T++ DF+L+N+Y PN GG    RL+FK  F + +    EE R  +   +V+ GD+N      D+K     +  K  G     R W  +V+E G Y+DTFR  HP   D YS++D   T  R  N G+RIDY ++  TPE          + EV G         SDH PV+++L+
Sbjct:    1 MRLVSWNVNGIRAA------AKKTFFDYLEEESPDILCLQETKAHEEQLDET----LITPPGYYTYWHAGERKGYSGVATFTKTRPTAVTRGTDII--------PMDTEGRILRTEYDDFLLYNIYFPN-GGRSAERLQFKLDFYDQILAHFEEQRA-KGAPLVICGDVNTAHHEIDLKNP--KQNVKNSGFMPIERAWLDKVVELG-YIDTFRHFHPDAVDHYSWWD-MRTRARDRNAGWRIDYFIV--TPELIDSCADASIQMEVTG---------SDHAPVVLDLK 254

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: KKP39574.1 (exodeoxyribonuclease III Xth2, exodeoxyribonuclease III [Candidatus Peregrinibacteria bacterium GW2011_GWF2_33_10] >OGJ45068.1 exodeoxyribonuclease III [Candidatus Peregrinibacteria bacterium RIFOXYA2_FULL_33_21] >OGJ46061.1 exodeoxyribonuclease III [Candidatus Peregrinibacteria bacterium RIFOXYA12_FULL_33_12] >OGJ50848.1 exodeoxyribonuclease III [Candidatus Peregrinibacteria bacterium RIFOXYB2_FULL_33_20])

HSP 1 Score: 142.9 bits (359), Expect = 2.800e-30
Identity = 98/286 (34.27%), Postives = 150/286 (52.45%), Query Frame = 0

Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGWFTYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEENEEGF-EISKEGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNLVADMKEDMHMEFWKE--EGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKASDHMPVMVELE 284
            MKIISWNV  + A+      +K     FL+D + DI+  QE K   ++  K     L P GG+F Y++  + PGY G+         A+Y+  ++L      G  E  +EGR +  D GDF+LFNVY PN GG G  RL+FK  F +   + + + + Q  + +++ GD N  A  + D+      E   G     RHW  + L  G  VD FR +HP + + Y+++ +  T  R  N G+RIDY L++S   + MP+I +AE+L   +      SDH P+++E+E
Sbjct:    1 MKIISWNVNGIRAIS-----KKREFWDFLEDFSPDILALQEVK---SEKYKLSMDILQPPGGYFAYFNCAKRPGYSGV---------AIYSKKQILNISQTIGIKEFDEEGRFMEIDFGDFILFNVYFPN-GGSGELRLKFKLDFYDKFLQHILDLKSQ-GKGIIVGGDFN-TAHTEIDLARPKENESISGFMPIERHWVDKYLRHG-LVDIFRQIHPDKKNAYTWW-SMRTAARVRNIGWRIDYFLITS---DLMPRIKQAEILSEVI-----GSDHCPILLEIE 256

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: XP_024370825.1 (DNA-(apurinic or apyrimidinic site) lyase 2-like isoform X1 [Physcomitrella patens])

HSP 1 Score: 142.9 bits (359), Expect = 2.800e-30
Identity = 99/290 (34.14%), Postives = 147/290 (50.69%), Query Frame = 0

Query:    1 MKIISWNVASL-PALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGWFTYWSIG-QIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISKEGRVLLTDHGDFVLFNVYCPNA--GGEGRPRLEFKRRFLEALWKKME--EWRVQRRRRVVLVGDLNLVADMKEDMHMEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKA-SDHMPVMVELE 284
            M+I SWNV  L   LK        +   F   LN DI+CFQE K+      +K   ++    G+ ++W+   +  GY G+ T+ K   + +    + L  EN    ++  EGR++ TDHG FVL NVY PN+  G +GRPRL+FK R+L+AL +     +  V+  + +V+VGD N VA    D+H  +  EE      R W    L   RY+D +R  HP E + +S +D   +  R  NEG RIDY + +             EVL + +++  K  SDH  V+V L+
Sbjct:    1 MRIFSWNVNGLRTTLKDVAACHTSASNYFCQVLNADIVCFQEAKIQ----EEKLEKWIACVDGYHSHWAFSREKKGYSGVVTYVKEALSPLDAKADWL-GENSSAEDLCNEGRLMCTDHGSFVLLNVYVPNSGDGDKGRPRLDFKMRYLKALEQTFHAGDDLVRSGKHIVIVGDFN-VAHKDIDVHSRWKVEEIYSLEEREWLDGFL--SRYIDLYRHFHPDEKNIFSVWDQK-SDARTRNEGLRIDYAICNEG--------FLTEVLETDIVKMQKQWSDHAAVVVTLK 273

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: XP_024370828.1 (DNA-(apurinic or apyrimidinic site) lyase 2-like isoform X3 [Physcomitrella patens])

HSP 1 Score: 142.9 bits (359), Expect = 2.800e-30
Identity = 99/290 (34.14%), Postives = 147/290 (50.69%), Query Frame = 0

Query:    1 MKIISWNVASL-PALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGWFTYWSIG-QIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISKEGRVLLTDHGDFVLFNVYCPNA--GGEGRPRLEFKRRFLEALWKKME--EWRVQRRRRVVLVGDLNLVADMKEDMHMEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKA-SDHMPVMVELE 284
            M+I SWNV  L   LK        +   F   LN DI+CFQE K+      +K   ++    G+ ++W+   +  GY G+ T+ K   + +    + L  EN    ++  EGR++ TDHG FVL NVY PN+  G +GRPRL+FK R+L+AL +     +  V+  + +V+VGD N VA    D+H  +  EE      R W    L   RY+D +R  HP E + +S +D   +  R  NEG RIDY + +             EVL + +++  K  SDH  V+V L+
Sbjct:    1 MRIFSWNVNGLRTTLKDVAACHTSASNYFCQVLNADIVCFQEAKIQ----EEKLEKWIACVDGYHSHWAFSREKKGYSGVVTYVKEALSPLDAKADWL-GENSSAEDLCNEGRLMCTDHGSFVLLNVYVPNSGDGDKGRPRLDFKMRYLKALEQTFHAGDDLVRSGKHIVIVGDFN-VAHKDIDVHSRWKVEEIYSLEEREWLDGFL--SRYIDLYRHFHPDEKNIFSVWDQK-SDARTRNEGLRIDYAICNEG--------FLTEVLETDIVKMQKQWSDHAAVVVTLK 273

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: AFY03108.1 (exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius])

HSP 1 Score: 142.1 bits (357), Expect = 4.700e-30
Identity = 103/289 (35.64%), Postives = 150/289 (51.90%), Query Frame = 0

Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGWF-TYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISK---EGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNLVADMKEDMH--MEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKASDHMPVMVELE 284
            +KIISWNV  + A      H+KG +  F++    DI C QETK  + QV  +          W  +YWS     GY G+ATF   EP +V           E G+ IS+   EGR++++DHG F L+N+Y PN GG G  R  FK++FL+ L   ++E ++   R++V+VGD N VA    D+H  +   K  G     R WF   ++ G ++DTFR   P E   YS++D Y    R +N G+RIDYI +S   E+ +          + +L   + SDH PV+  L+
Sbjct:   17 VKIISWNVNGIRAC-----HKKG-LLDFVNTEKPDIFCIQETKAHIDQVENELKKLT-----WMHSYWSSAVKKGYSGVATFVNEEPKSV-----------EYGWGISEYQSEGRIIVSDHGPFDLYNIYFPN-GGSGDVRHNFKQQFLKDLNVHLKE-KLATGRQIVVVGDYN-VAHEAIDVHDPVRLSKVSGFFPEERAWFDSFVDLG-FIDTFRYFKPSEAKRYSWWD-YRQMARISNRGWRIDYICISKGLEKYL--------ASADILDQVEGSDHCPVVATLD 270

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: WP_080602443.1 (exodeoxyribonuclease III [Bdellovibrio bacteriovorus])

HSP 1 Score: 142.1 bits (357), Expect = 4.700e-30
Identity = 103/289 (35.64%), Postives = 150/289 (51.90%), Query Frame = 0

Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGWF-TYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISK---EGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNLVADMKEDMH--MEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKASDHMPVMVELE 284
            +KIISWNV  + A      H+KG +  F++    DI C QETK  + QV  +          W  +YWS     GY G+ATF   EP +V           E G+ IS+   EGR++++DHG F L+N+Y PN GG G  R  FK++FL+ L   ++E ++   R++V+VGD N VA    D+H  +   K  G     R WF   ++ G ++DTFR   P E   YS++D Y    R +N G+RIDYI +S   E+ +          + +L   + SDH PV+  L+
Sbjct:   31 VKIISWNVNGIRAC-----HKKG-LLDFVNTEKPDIFCIQETKAHIDQVENELKKLT-----WMHSYWSSAVKKGYSGVATFVNEEPKSV-----------EYGWGISEYQSEGRIIVSDHGPFDLYNIYFPN-GGSGDVRHNFKQQFLKDLNVHLKE-KLATGRQIVVVGDYN-VAHEAIDVHDPVRLSKVSGFFPEERAWFDSFVDLG-FIDTFRYFKPSEAKRYSWWD-YRQMARISNRGWRIDYICISKGLEKYL--------ASADILDQVEGSDHCPVVATLD 284

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: WP_011165853.1 (exodeoxyribonuclease III [Bdellovibrio bacteriovorus] >CAE78316.1 Exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100])

HSP 1 Score: 142.1 bits (357), Expect = 4.700e-30
Identity = 104/289 (35.99%), Postives = 150/289 (51.90%), Query Frame = 0

Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGW-FTYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISK---EGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNLVADMKEDMH--MEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKASDHMPVMVELE 284
            +KIISWNV  + A      H+KG +  F++    DI C QETK  + QV  +          W  +YWS     GY G+ATF   EP +V           E G+ IS+   EGR++++DHG F L+N+Y PN GG G  R  FK++FL+ L   ++E ++   R+VV+VGD N VA    D+H  +   K  G     R WF   ++ G ++DTFR   P E   YS++D Y    R +N G+RIDYI +S   E+ +          + +L   + SDH PV+  L+
Sbjct:   31 VKIISWNVNGIRAC-----HKKG-LLDFVNREKPDIFCIQETKAHIDQVENELKKLT-----WNHSYWSSAVKKGYSGVATFVNEEPKSV-----------EYGWGISEYESEGRIIISDHGPFDLYNIYFPN-GGSGDVRHNFKQQFLKDLNHHLKE-KLATGRQVVVVGDYN-VAHEAIDVHDPVRLSKVSGFFPEERAWFDSFVDLG-FIDTFRYFKPSEAKRYSWWD-YRQMARISNRGWRIDYICVSKGLEKYL--------ASADILDQVEGSDHCPVVATLD 284

[Close]

BLAST of NO17G01290 vs. NCBI_GenBank
Match: KKU75405.1 (Exodeoxyribonuclease III [Candidatus Giovannonibacteria bacterium GW2011_GWB1_47_6b] >OGZ57623.1 exodeoxyribonuclease III [Candidatus Ryanbacteria bacterium RIFCSPLOWO2_12_FULL_47_9c])

HSP 1 Score: 140.6 bits (353), Expect = 1.400e-29
Identity = 106/291 (36.43%), Postives = 141/291 (48.45%), Query Frame = 0

Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGWFTYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEENEEGFEISK---EGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNL------VADMKEDMHMEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKASDHMPVMVEL 283
            MKIISWN+  L A+     H KG    F+     DI+C QETK    Q+ ++      PDG    + S     GY G+A + + EP           E  E G  I K   EGR++  D+GDFVL NVY PN GG G  RL++K  F +A    +++ R Q +R V+  GD+N       +A  KE+ H       G     R W   V E G YVD FR  +P++ D Y+++D   T  R  N G+RIDY  +S       P I K  V G  +L     SDH PV +EL
Sbjct:    1 MKIISWNINGLRAV-----HAKGLFLPFVKKEKPDILCIQETKSDEEQLPEELRD---PDGYVSFFSSSRARKGYSGVAIYSRPEP-----------ENIEYGMGIKKFDDEGRIVQADYGDFVLLNVYFPN-GGSGPERLKYKLEFYDAFLNYIQKLRAQ-KRHVIFCGDVNTAHHDIDLARPKENEH-----NSGFLPEERAWLDTVAERG-YVDVFRHFYPKKRDVYTYWD-LKTRARDRNVGWRIDYFFVS-------PDIIK-NVKGVKILSDVFGSDHCPVAMEL 255

The following BLAST results are available for this feature:

BLAST of NO17G01290 vs. NCBI_GenBank

BLAST of NO17G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
WP_063242641.1	9.500e-31	35.31	exodeoxyribonuclease III [Bdellovibrio bacteriovor...	[more]
AHZ83879.1	1.600e-30	36.33	exodeoxyribonuclease III [Bdellovibrio bacteriovor...	[more]
PLX23595.1	1.600e-30	33.91	exodeoxyribonuclease III [Ignavibacteria bacterium...	[more]
KKP39574.1	2.800e-30	34.27	exodeoxyribonuclease III Xth2, exodeoxyribonucleas...	[more]
XP_024370825.1	2.800e-30	34.14	DNA-(apurinic or apyrimidinic site) lyase 2-like i...	[more]
XP_024370828.1	2.800e-30	34.14	DNA-(apurinic or apyrimidinic site) lyase 2-like i...	[more]
AFY03108.1	4.700e-30	35.64	exodeoxyribonuclease III [Bdellovibrio bacteriovor...	[more]
WP_080602443.1	4.700e-30	35.64	exodeoxyribonuclease III [Bdellovibrio bacteriovor...	[more]
WP_011165853.1	4.700e-30	35.99	exodeoxyribonuclease III [Bdellovibrio bacteriovor...	[more]
KKU75405.1	1.400e-29	36.43	Exodeoxyribonuclease III [Candidatus Giovannonibac...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL157	nonsL157	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL156	nonsL156	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR036	ncniR036	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR035	ncniR035	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR030	ngnoR030	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR028	ngnoR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002894	NSK002894	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO17G01290.1	NO17G01290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632487	gene_7763	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100047g27	gene6168	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO17G01290.1	NO17G01290.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO17G01290 ID=NO17G01290|Name=NO17G01290|organism=Nannochloropsis oceanica|type=gene|length=1786bp
ATGAAGATCATCAGCTGGAATGTGGCGTCCCTCCCGGCCTTGAAGGGCTT
CATTGAGCATGAAAAAGGCAGTATGAGACAGTTTTTGGATGACCTGAATG
TGGACATTATGTGCTTTCAAGgtaggattagatggatagagacagttttt
ggatgacctgaatgtggacattatgtgcttttaaggtaggattagttgga
taggaaggaaaagttacactaaaaatggagtgtagagggaggggagacac
aggaagagaaagagggtatgcacggatatgcgtgacatgtgccattttca
tttcttagcatgtcccactctccgacattacgccacatatacatggttcc
tctatttctacctctacatcacagAAACTAAGCTTACCCTCGCGCAAGTG
ACTAAAAAACAAGCCTCTTTCCTGGTGCCAGATGGAGGGTGGTTCACCTA
CTGGTCTATTGGACAAATTCCGGGCTATTGTGGCATTGCCACTTTTTGTA
AAGCTGAGCCAGCGGCAGTTTACACCGACGTGGAACTCTTAGAGGAGGAG
AATGAGGAAGGTTTCGAAATCTCGAAGGAGGGCAGGGTGTTACTTACTGA
TCACGGTGACTTTGTTTTGTTTAATGTATATTGTCCCAATGCCGGGGGGG
AGGGAAGGCCGAGATTAGAGTTTAAGAGGCGTTTTTTGGAGGCCCTATGG
AAGAAGATGGAGGAGTGGAGAGTACAAAGGAGGAGAAGGGTAGTACTGGT
GGGCGATTTGAATTTGGTGGCAGATATGAAAGAAGATATGCATATGGAAT
TTTGGAAAGAGGAAGGTTTGGACGAACGGACGAGGCATTGGTTTCCGCGG
GTGCTGGAGGGGGGGAGATATGTAGATACATTTAGGGTGTTGCATCCTAG
GGAGACGGACACCTATTCGTTTTTTGATAACTACATTACGACCAGAAGAG
GCGCGAATGAAGGGTATAGGATTGACTATATTTTGCTGTCAAGCACGCCA
GAGGAGACGATGCCCAAAATAACAAAGGCGGAGGTTCTGGGCAGTGGAGT
TTTGAGGAGCAATAAGGCGTCCGATCACATGCCGGTGATGGTGGAGCTGG
AATTTGGGAGCAAGGGAGGGAAGGAGGAAGGGATGGAGGGCGAGGAAGGA
GGGGGAAAGCCGCAGGAGCACGAGCAAGAGCACACACAGGAGCAGCAGCA
TCAGCATCAGCATCAGCTGCAGAAATGTGGGGAGGAGCAGCCGCGGGCAT
TCTCTTCGGTACTGCCTGTGCAAGTGTCGCCGTTGCTCTGCGACGTCAAG
GCCAAGGTGGAAGGACGGGTGCTCTTCCGGAAGCTGCTGCCTGATCCGAA
CCAACAGAGTATTAAGGGTTTTTTTGCTGCTAAGAAAACAACAGTGACGA
CGACTACGACTGAGAATGGTGTGAACATGGAGGCAACAGGAGCAGGAGCA
GGAGGACGAGGAGGACGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGG
AGGGGATGGATCAGCAGTACAACCACCACCAGGAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGACGGAAAGGAGAAGCAGCAGGTGGTGTCGTG
AAGAGAAGGGCAGAAGTTAGGGTCGAAGCGGAGACGGGAAAGGATAGAAA
AAAAGCGCGAGAGGCCACGGCGACTGAGGGGAAGGGGCTGCGCAAGTTTT
TGACGAGTGCGTCCACAAGCAGTTGCAGCATCCGCACTAGCATCCACACT
AGCAGCAGCAGCAGTAGTAAAAATAAGGAAGTGTAA

protein sequence of NO17G01290.1

>NO17G01290.1-protein ID=NO17G01290.1-protein|Name=NO17G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVT
KKQASFLVPDGGWFTYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEEN
EEGFEISKEGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWK
KMEEWRVQRRRRVVLVGDLNLVADMKEDMHMEFWKEEGLDERTRHWFPRV
LEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPE
ETMPKITKAEVLGSGVLRSNKASDHMPVMVELEFGSKGGKEEGMEGEEGG
GKPQEHEQEHTQEQQHQHQHQLQKCGEEQPRAFSSVLPVQVSPLLCDVKA
KVEGRVLFRKLLPDPNQQSIKGFFAAKKTTVTTTTTENGVNMEATGAGAG
GRGGRGGRGGGGGGGGGDGSAVQPPPGTAAAAAAAAAAGRKGEAAGGVVK
RRAEVRVEAETGKDRKKAREATATEGKGLRKFLTSASTSSCSIRTSIHTS
SSSSSKNKEV*

Synonyms

Publications