NO17G01290.1, NO17G01290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01290.1
Unique NameNO17G01290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr17:397184..398969 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:397184..398969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01290.1 vs.
Match: EWM24315.1 (exodeoxyribonuclease iii [Nannochloropsis gaditana])

HSP 1 Score: 463.8 bits (1192), Expect = 7.000e-127
Identity = 242/403 (60.05%), Postives = 306/403 (75.93%), Query Frame = 0 
Query:    1 MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVTKKQASFLVPDGGWFTYWSIGQIPGYCGIATFCKAE-PAAVYTDVELLEEENEEGFEISKEGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWKKMEEWRVQRRRRVVLVGDLNLVADMKEDMHMEFWKEEGLDERTRHWFPRVLEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPEETMPKITKAEVLGSGVLRSNKASDHMPVMVELEFGSKGGKEEGMEGEEGGGKPQEHEQEHTQEQQHQHQHQLQKCGEEQPRAFSSVLPVQVSPLLCDVKAKVEGRVLFRKLLPDPNQQSIKGFFAAKKT--TVTTTTTENGVNMEATGAGAG 401
            +KIISWNVASLPAL+GFIEHEKGSM +FL+DL VDIMCFQETKL++AQ+TKKQASFLVPDG W+TYW++GQ PGYCG+ATFCKAE P +VYTD +L  EE+E    ISKEGR+++TDHGDFVLFNVYCPNAGG+GRPR+EFK RFLEALW+KMEE+RV R RRV+L GDLNLVADMK DMH EFW  +G+DERTRHW PR+L  G YVD+FR LHP   D Y+FFDNY+TTRRG N+GYRIDYIL+SS P  T P++  AE+L + VLR++KASDH+PVMVELE          +E E+ G +   ++  +  +++     +++   E++     +VL    SPL   VK  +EGR +FRK+LPDP Q SIKGFFA+ +T   V+ T  ++  ++E++    G
Sbjct:    2 VKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPS-TGPRLLAAEIL-TNVLRTSKASDHVPVMVELE----------LEHEKLGKEGSRNKVNNASDRKEGAGQRVEPLPEQK-----AVLAA-FSPLPPSVKDAIEGRTIFRKILPDPKQPSIKGFFASTRTPSVVSNTKGQSAGSVESSSGPEG 386
The following BLAST results are available for this feature:
BLAST of NO17G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24315.17.000e-12760.05exodeoxyribonuclease iii [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01290NO17G01290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01290.1NO17G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01290.1.cds1NO17G01290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01290.1.cds2NO17G01290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01290.1 ID=NO17G01290.1|Name=NO17G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ATGAAGATCATCAGCTGGAATGTGGCGTCCCTCCCGGCCTTGAAGGGCTT
CATTGAGCATGAAAAAGGCAGTATGAGACAGTTTTTGGATGACCTGAATG
TGGACATTATGTGCTTTCAAGAAACTAAGCTTACCCTCGCGCAAGTGACT
AAAAAACAAGCCTCTTTCCTGGTGCCAGATGGAGGGTGGTTCACCTACTG
GTCTATTGGACAAATTCCGGGCTATTGTGGCATTGCCACTTTTTGTAAAG
CTGAGCCAGCGGCAGTTTACACCGACGTGGAACTCTTAGAGGAGGAGAAT
GAGGAAGGTTTCGAAATCTCGAAGGAGGGCAGGGTGTTACTTACTGATCA
CGGTGACTTTGTTTTGTTTAATGTATATTGTCCCAATGCCGGGGGGGAGG
GAAGGCCGAGATTAGAGTTTAAGAGGCGTTTTTTGGAGGCCCTATGGAAG
AAGATGGAGGAGTGGAGAGTACAAAGGAGGAGAAGGGTAGTACTGGTGGG
CGATTTGAATTTGGTGGCAGATATGAAAGAAGATATGCATATGGAATTTT
GGAAAGAGGAAGGTTTGGACGAACGGACGAGGCATTGGTTTCCGCGGGTG
CTGGAGGGGGGGAGATATGTAGATACATTTAGGGTGTTGCATCCTAGGGA
GACGGACACCTATTCGTTTTTTGATAACTACATTACGACCAGAAGAGGCG
CGAATGAAGGGTATAGGATTGACTATATTTTGCTGTCAAGCACGCCAGAG
GAGACGATGCCCAAAATAACAAAGGCGGAGGTTCTGGGCAGTGGAGTTTT
GAGGAGCAATAAGGCGTCCGATCACATGCCGGTGATGGTGGAGCTGGAAT
TTGGGAGCAAGGGAGGGAAGGAGGAAGGGATGGAGGGCGAGGAAGGAGGG
GGAAAGCCGCAGGAGCACGAGCAAGAGCACACACAGGAGCAGCAGCATCA
GCATCAGCATCAGCTGCAGAAATGTGGGGAGGAGCAGCCGCGGGCATTCT
CTTCGGTACTGCCTGTGCAAGTGTCGCCGTTGCTCTGCGACGTCAAGGCC
AAGGTGGAAGGACGGGTGCTCTTCCGGAAGCTGCTGCCTGATCCGAACCA
ACAGAGTATTAAGGGTTTTTTTGCTGCTAAGAAAACAACAGTGACGACGA
CTACGACTGAGAATGGTGTGAACATGGAGGCAACAGGAGCAGGAGCAGGA
GGACGAGGAGGACGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GGATGGATCAGCAGTACAACCACCACCAGGAACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGACGGAAAGGAGAAGCAGCAGGTGGTGTCGTGAAG
AGAAGGGCAGAAGTTAGGGTCGAAGCGGAGACGGGAAAGGATAGAAAAAA
AGCGCGAGAGGCCACGGCGACTGAGGGGAAGGGGCTGCGCAAGTTTTTGA
CGAGTGCGTCCACAAGCAGTTGCAGCATCCGCACTAGCATCCACACTAGC
AGCAGCAGCAGTAGTAAAAATAAGGAAGTGTAA
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protein sequence of NO17G01290.1

>NO17G01290.1-protein ID=NO17G01290.1-protein|Name=NO17G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MKIISWNVASLPALKGFIEHEKGSMRQFLDDLNVDIMCFQETKLTLAQVT
KKQASFLVPDGGWFTYWSIGQIPGYCGIATFCKAEPAAVYTDVELLEEEN
EEGFEISKEGRVLLTDHGDFVLFNVYCPNAGGEGRPRLEFKRRFLEALWK
KMEEWRVQRRRRVVLVGDLNLVADMKEDMHMEFWKEEGLDERTRHWFPRV
LEGGRYVDTFRVLHPRETDTYSFFDNYITTRRGANEGYRIDYILLSSTPE
ETMPKITKAEVLGSGVLRSNKASDHMPVMVELEFGSKGGKEEGMEGEEGG
GKPQEHEQEHTQEQQHQHQHQLQKCGEEQPRAFSSVLPVQVSPLLCDVKA
KVEGRVLFRKLLPDPNQQSIKGFFAAKKTTVTTTTTENGVNMEATGAGAG
GRGGRGGRGGGGGGGGGDGSAVQPPPGTAAAAAAAAAAGRKGEAAGGVVK
RRAEVRVEAETGKDRKKAREATATEGKGLRKFLTSASTSSCSIRTSIHTS
SSSSSKNKEV*
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mRNA from alignment at chr17:397184..398969-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01290.1 ID=NO17G01290.1|Name=NO17G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp|location=Sequence derived from alignment at chr17:397184..398969- (Nannochloropsis oceanica)
ATGAAGATCATCAGCTGGAATGTGGCGTCCCTCCCGGCCTTGAAGGGCTT
CATTGAGCATGAAAAAGGCAGTATGAGACAGTTTTTGGATGACCTGAATG
TGGACATTATGTGCTTTCAAGGTAGGATTAGATGGATAGAGACAGTTTTT
GGATGACCTGAATGTGGACATTATGTGCTTTTAAGGTAGGATTAGTTGGA
TAGGAAGGAAAAGTTACACTAAAAATGGAGTGTAGAGGGAGGGGAGACAC
AGGAAGAGAAAGAGGGTATGCACGGATATGCGTGACATGTGCCATTTTCA
TTTCTTAGCATGTCCCACTCTCCGACATTACGCCACATATACATGGTTCC
TCTATTTCTACCTCTACATCACAGAAACTAAGCTTACCCTCGCGCAAGTG
ACTAAAAAACAAGCCTCTTTCCTGGTGCCAGATGGAGGGTGGTTCACCTA
CTGGTCTATTGGACAAATTCCGGGCTATTGTGGCATTGCCACTTTTTGTA
AAGCTGAGCCAGCGGCAGTTTACACCGACGTGGAACTCTTAGAGGAGGAG
AATGAGGAAGGTTTCGAAATCTCGAAGGAGGGCAGGGTGTTACTTACTGA
TCACGGTGACTTTGTTTTGTTTAATGTATATTGTCCCAATGCCGGGGGGG
AGGGAAGGCCGAGATTAGAGTTTAAGAGGCGTTTTTTGGAGGCCCTATGG
AAGAAGATGGAGGAGTGGAGAGTACAAAGGAGGAGAAGGGTAGTACTGGT
GGGCGATTTGAATTTGGTGGCAGATATGAAAGAAGATATGCATATGGAAT
TTTGGAAAGAGGAAGGTTTGGACGAACGGACGAGGCATTGGTTTCCGCGG
GTGCTGGAGGGGGGGAGATATGTAGATACATTTAGGGTGTTGCATCCTAG
GGAGACGGACACCTATTCGTTTTTTGATAACTACATTACGACCAGAAGAG
GCGCGAATGAAGGGTATAGGATTGACTATATTTTGCTGTCAAGCACGCCA
GAGGAGACGATGCCCAAAATAACAAAGGCGGAGGTTCTGGGCAGTGGAGT
TTTGAGGAGCAATAAGGCGTCCGATCACATGCCGGTGATGGTGGAGCTGG
AATTTGGGAGCAAGGGAGGGAAGGAGGAAGGGATGGAGGGCGAGGAAGGA
GGGGGAAAGCCGCAGGAGCACGAGCAAGAGCACACACAGGAGCAGCAGCA
TCAGCATCAGCATCAGCTGCAGAAATGTGGGGAGGAGCAGCCGCGGGCAT
TCTCTTCGGTACTGCCTGTGCAAGTGTCGCCGTTGCTCTGCGACGTCAAG
GCCAAGGTGGAAGGACGGGTGCTCTTCCGGAAGCTGCTGCCTGATCCGAA
CCAACAGAGTATTAAGGGTTTTTTTGCTGCTAAGAAAACAACAGTGACGA
CGACTACGACTGAGAATGGTGTGAACATGGAGGCAACAGGAGCAGGAGCA
GGAGGACGAGGAGGACGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGG
AGGGGATGGATCAGCAGTACAACCACCACCAGGAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGACGGAAAGGAGAAGCAGCAGGTGGTGTCGTG
AAGAGAAGGGCAGAAGTTAGGGTCGAAGCGGAGACGGGAAAGGATAGAAA
AAAAGCGCGAGAGGCCACGGCGACTGAGGGGAAGGGGCTGCGCAAGTTTT
TGACGAGTGCGTCCACAAGCAGTTGCAGCATCCGCACTAGCATCCACACT
AGCAGCAGCAGCAGTAGTAAAAATAAGGAAGTGTAA
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Coding sequence (CDS) from alignment at chr17:397184..398969-

>NO17G01290.1 ID=NO17G01290.1|Name=NO17G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr17:397184..398969- (Nannochloropsis oceanica)
ATGAAGATCATCAGCTGGAATGTGGCGTCCCTCCCGGCCTTGAAGGGCTT
CATTGAGCATGAAAAAGGCAGTATGAGACAGTTTTTGGATGACCTGAATG
TGGACATTATGTGCTTTCAAGAAACTAAGCTTACCCTCGCGCAAGTGACT
AAAAAACAAGCCTCTTTCCTGGTGCCAGATGGAGGGTGGTTCACCTACTG
GTCTATTGGACAAATTCCGGGCTATTGTGGCATTGCCACTTTTTGTAAAG
CTGAGCCAGCGGCAGTTTACACCGACGTGGAACTCTTAGAGGAGGAGAAT
GAGGAAGGTTTCGAAATCTCGAAGGAGGGCAGGGTGTTACTTACTGATCA
CGGTGACTTTGTTTTGTTTAATGTATATTGTCCCAATGCCGGGGGGGAGG
GAAGGCCGAGATTAGAGTTTAAGAGGCGTTTTTTGGAGGCCCTATGGAAG
AAGATGGAGGAGTGGAGAGTACAAAGGAGGAGAAGGGTAGTACTGGTGGG
CGATTTGAATTTGGTGGCAGATATGAAAGAAGATATGCATATGGAATTTT
GGAAAGAGGAAGGTTTGGACGAACGGACGAGGCATTGGTTTCCGCGGGTG
CTGGAGGGGGGGAGATATGTAGATACATTTAGGGTGTTGCATCCTAGGGA
GACGGACACCTATTCGTTTTTTGATAACTACATTACGACCAGAAGAGGCG
CGAATGAAGGGTATAGGATTGACTATATTTTGCTGTCAAGCACGCCAGAG
GAGACGATGCCCAAAATAACAAAGGCGGAGGTTCTGGGCAGTGGAGTTTT
GAGGAGCAATAAGGCGTCCGATCACATGCCGGTGATGGTGGAGCTGGAAT
TTGGGAGCAAGGGAGGGAAGGAGGAAGGGATGGAGGGCGAGGAAGGAGGG
GGAAAGCCGCAGGAGCACGAGCAAGAGCACACACAGGAGCAGCAGCATCA
GCATCAGCATCAGCTGCAGAAATGTGGGGAGGAGCAGCCGCGGGCATTCT
CTTCGGTACTGCCTGTGCAAGTGTCGCCGTTGCTCTGCGACGTCAAGGCC
AAGGTGGAAGGACGGGTGCTCTTCCGGAAGCTGCTGCCTGATCCGAACCA
ACAGAGTATTAAGGGTTTTTTTGCTGCTAAGAAAACAACAGTGACGACGA
CTACGACTGAGAATGGTGTGAACATGGAGGCAACAGGAGCAGGAGCAGGA
GGACGAGGAGGACGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GGATGGATCAGCAGTACAACCACCACCAGGAACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGACGGAAAGGAGAAGCAGCAGGTGGTGTCGTGAAG
AGAAGGGCAGAAGTTAGGGTCGAAGCGGAGACGGGAAAGGATAGAAAAAA
AGCGCGAGAGGCCACGGCGACTGAGGGGAAGGGGCTGCGCAAGTTTTTGA
CGAGTGCGTCCACAAGCAGTTGCAGCATCCGCACTAGCATCCACACTAGC
AGCAGCAGCAGTAGTAAAAATAAGGAAGTGTAA
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Synonyms
Publications