|
|
Properties
| Property Name | Value |
|---|
| Description | Cytochrome b-561 domain containing 2 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr17 | genome | chr17:381744..384371 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006593 | Cyt_b561/ferric_Rdtase_TM |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0008152 | metabolic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
Homology
BLAST of NO17G01220 vs. NCBI_GenBank
Match: EWM24329.1 (cytochrome b-561 domain containing 2 [Nannochloropsis gaditana]) HSP 1 Score: 242.7 bits (618), Expect = 1.700e-60 Identity = 126/213 (59.15%), Postives = 146/213 (68.54%), Query Frame = 0
Query: 134 MVASWLFFAPLSWSLILVRGRTLVKSKRVILTQLHAASMFLAVVCWGLALGSIFVHKQKLEKEHFQSPHSMMGASVFVLIVSSYMSALYNVVDSKSKEKVGTRGGVSTRRFPLLILCFCSQHTYTNRCFPYIYGLNSRQVNFNWTSKIHKNIGKVALCMTGLAISTGLFTRWGKTTFEDKNIRTGLALCIIVPQLIVALDVMTRSAGKEDKRK 347
MV SWLFFAPLSWSLIL RG T++K+KR++LTQLHAASMFLAVVCW AL SIF+HK L KEHF S HSM+GASVFVL++ SY SA YNVVD ++KE + FNW SKIHK +GK AL +G AISTGLFTRWGKTTFEDKN+R GLALCIIVPQ++VALDVM R AG +++RK
Sbjct: 1 MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKE-----------------------------------------IKFNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCIIVPQVVVALDVMARFAGHKNERK 172
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G01220 ID=NO17G01220|Name=NO17G01220|organism=Nannochloropsis oceanica|type=gene|length=2628bp
CCTGCGGGGACTTTTTTGGAGTCTTTGGAGATGCAGGGAAGGAGCGGATC
AGAACGTGCATCTCTCGCCCGGTTAATGAATCGAATCGATAATAATGATA
GAAAGGACATGGAAGTACATGCAATCACCAAGTTTAATAATGCCATGTCC
TGATGGCCTGTTGCAGCACGCTGCGTCACGGATTGTGTGTGATTGATGTG
TAAGGGAGGGGAGAGAGGAGGGAGGAGGAGGATCGGAAGCGGCGGCGCGG
AATTCCTACATTCTGTCCCCCATTCATTCAGGCATTGGGAGTCTTGCACA
GAGCAAGGCAAGCGGAGCTCGCAGTACCCTGTTCTCCTTCTTTTTTCTTA
CCCAAAATCTACCTCTTTTCACAACCCGAAGGCCATCTCCTCCGCCCGCT
TTTCTCCAAGTTCCCATCCGGCTCCCGCATCAGCCCAGGAAGCAGCGATG
GCCCGCCTGCCTGTCACCCCCGTCCTCCTGCTCCTGACCTTTGGAGCAGG
GGCCTATATTGCCTTTGAGACCTTCAAAGCCCTTGGCGGCAAGACGCTGA
AAGAgtgagtacttgtgggtgggcgttggaggtgtgtggaggtaatgggg
aagcggttgttcactttactttcacaaaactgcacgacttattattaatc
cacctcttcctcggttactgtagccaagggggagggaaggtagagtttcc
ctttcttccgcatcgtatggtggatggcaaattatccactgacttccaat
tccatccttattctctcttccatccccacagTCTTAAGACCCTCCCTCTC
TTCGCCTACCACCCCATCCTGATGGTAGCCTCCTGGCTGTTCTTCGCCCC
TCTTTCCTGGAGCCTCATCTTGGTGCGCGGCAGGACCTTGGTCAAAAGCA
AGCGTGTGATTTTGACGCAGCTGCACGCTGCAAGCATGTTTTTGGCGGTA
GTCTGCTGGGGCTTGGCCCTCGGGTCTATTTTTGTTCACAAGCAAAAATT
GGAGAAGGAGCATTTCCAGAGTCCGCATAGCATGATGGGCGCGAGTGTCT
TTGTTTTGATTGTTTCGAGCTATATGTCAGCGCTTTACAACGTAGTTGAC
TCAAAGTCCAAGGAAAAGgtaggaactagaggtggtgtttcaactaggag
gtttcctcttcttattttgtgcttctgctctcagcacacatacactaacc
gttgctttccatacatctatggtctgaactcccgtcagGTCAACTTTAAT
TGGACAAGCAAGATTCACAAAAACATCGGGAAAGTGGCCCTGTGCATGAC
AGGGTTAGCTATCTCCACGGGTCTGTTCACTCGATGGGGCAAGACAACTT
TTGAGGATAAGAACATACGGACCGGTTTGGCATTGTGCATCATTGTACCC
CAGCTGATTGTGGCTTTGGATGTAATGACGCGATCCGCAGGGAAGGAGGA
CAAGCGGAAAGCCAAATAGGAGGAGGTAGGGAGGGAGGAAGGGAAATGAG
ATGAATTCATGAATGAAACTGTCATGCTAGGGGTTTGAAGGTGGTGAAAG
GATAGTCAACGGGTGTGAAAGCGAAGAGAGGGAGGAAAGAAAATCTGCAT
TGAGAGGTTGAGAGTCGTGGATGAGTTTGGTGGCTGGAGGAAGGAGGGGG
TTCTGACGGAATGATTTGAGACTTCGAAATGACTGCCGGAAAAAAAGAAA
AATCTATTCAGTCTGTGCCTCAAGCATATATTTCACACGATGTACTGCAT
TCACTACGGACTCCGTAGGGATGGCGAGGGACTAGGAGGAGGAAGAGACG
CCGCCAGCAATCGTCAATCATCTCTGCGGCACTTTCATAAGCACACTTGG
CGTAGATGGGCTAGAACATCAACAAGATTGAGTGACAAGAATAACCCTAC
TGTTATAAACCTCTTGAAGAGTGAGTACGCATACCTTTGAAATGTACGCC
CGTGCGAGGAGCGTGTGGGCCCGCAAAGGGCAGACTTGATAATTCTTTTT
CCTGTAGTTTCCTACAACCCTAAAATTATCTCGTGCCACCTAATCCGCAA
GAAAATGCGACCTACCAGAGCACAAGCGTGCCTCCTGCTGGGATTGCACA
CGGGGGAAAGCTTTCCAACAATAAATTGTTGCATATCCTTCCCTTATTTT
TCAGAGTTTTCTAGTGGCTTTCAAAGTTGACAGGTTGTTAAAAGGAAGTA
AAATGAATGCAAGCGAATGGATACTGCAAGGAAAAAACTCTTGTCCTGTT
TGAAATTGACAAGACGAAAGAGAAAGTTAGAAATATAATCAATTTTCAAT
CCTGCGCAGTTAGTAGAACAGACAAGTTGGAATCTGGGCCATACTGCCCA
GCAGTCCAGAAGAGACGGGCACACACCGGTGCGGTAAACGAAAGCAATAT
GCAACGTCTCCTCCATCCTTGCGTTTACGCCATATAGTCAGCCATGCCAC
AGACAACCAACTGACACGCATATCACCACGACATAATGGAAAGCTATTGC
TCAGAGGTCTCTGATGCACAGTATAATTTGTGTACAAATTTGTACCCAGA
CTCTGCCTTCTGCGCTTCTATCACCGTCATAGTCGTCATCACTTTTGCCC
ATACGCCTTTCGAACCGAACAAACACAC back to topprotein sequence of NO17G01220.2 >NO17G01220.2-protein ID=NO17G01220.2-protein|Name=NO17G01220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MCKGGERGGRRRIGSGGAEFLHSVPHSFRHWESCTEQGKRSSQYPVLLLF
SYPKSTSFHNPKAISSARFSPSSHPAPASAQEAAMARLPVTPVLLLLTFG
AGAYIAFETFKALGGKTLKDLKTLPLFAYHPILMVASWLFFAPLSWSLIL
VRGRTLVKSKRVILTQLHAASMFLAVVCWGLALGSIFVHKQKLEKEHFQS
PHSMMGASVFVLIVSSYMSALYNVVDSKSKEKVGTRGGVSTRRFPLLILC
FCSQHTYTNRCFPYIYGLNSRQVNFNWTSKIHKNIGKVALCMTGLAISTG
LFTRWGKTTFEDKNIRTGLALCIIVPQLIVALDVMTRSAGKEDKRKAK* back to topprotein sequence of NO17G01220.1 >NO17G01220.1-protein ID=NO17G01220.1-protein|Name=NO17G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MCKGGERGGRRRIGSGGAEFLHSVPHSFRHWESCTEQGKRSSQYPVLLLF
SYPKSTSFHNPKAISSARFSPSSHPAPASAQEAAMARLPVTPVLLLLTFG
AGAYIAFETFKALGGKTLKDLKTLPLFAYHPILMVASWLFFAPLSWSLIL
VRGRTLVKSKRVILTQLHAASMFLAVVCWGLALGSIFVHKQKLEKEHFQS
PHSMMGASVFVLIVSSYMSALYNVVDSKSKEKVNFNWTSKIHKNIGKVAL
CMTGLAISTGLFTRWGKTTFEDKNIRTGLALCIIVPQLIVALDVMTRSAG
KEDKRKAK* back to top
|