NO17G01220.1, NO17G01220.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G01220.1
Unique Name	NO17G01220.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2281
Alignment location	chr17:381744..384371 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:381744..384371 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G01220.1 vs.
Match: EWM24329.1 (cytochrome b-561 domain containing 2 [Nannochloropsis gaditana])

HSP 1 Score: 256.9 bits (655), Expect = 7.900e-65
Identity = 126/173 (72.83%), Postives = 146/173 (84.39%), Query Frame = 0

Query:  134 MVASWLFFAPLSWSLILVRGRTLVKSKRVILTQLHAASMFLAVVCWGLALGSIFVHKQKLEKEHFQSPHSMMGASVFVLIVSSYMSALYNVVDSKSKEKVNFNWTSKIHKNIGKVALCMTGLAISTGLFTRWGKTTFEDKNIRTGLALCIIVPQLIVALDVMTRSAGKEDKRK 307
            MV SWLFFAPLSWSLIL RG T++K+KR++LTQLHAASMFLAVVCW  AL SIF+HK  L KEHF S HSM+GASVFVL++ SY SA YNVVD ++KE + FNW SKIHK +GK AL  +G AISTGLFTRWGKTTFEDKN+R GLALCIIVPQ++VALDVM R AG +++RK
Sbjct:    1 MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKE-IKFNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCIIVPQVVVALDVMARFAGHKNERK 172

The following BLAST results are available for this feature:

BLAST of NO17G01220.1 vs.

BLAST of NO17G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24329.1	7.900e-65	72.83	cytochrome b-561 domain containing 2 [Nannochlorop...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G01220	NO17G01220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G01220.1	NO17G01220.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G01220.1.cds1	NO17G01220.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01220.1.cds2	NO17G01220.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01220.1.cds3	NO17G01220.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:381744..384371-
coding sequence from alignment at chr17:381744..384371-

mRNA sequence

>NO17G01220.1 ID=NO17G01220.1|Name=NO17G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2281bp
CCTGCGGGGACTTTTTTGGAGTCTTTGGAGATGCAGGGAAGGAGCGGATC
AGAACGTGCATCTCTCGCCCGGTTAATGAATCGAATCGATAATAATGATA
GAAAGGACATGGAAGTACATGCAATCACCAAGTTTAATAATGCCATGTCC
TGATGGCCTGTTGCAGCACGCTGCGTCACGGATTGTGTGTGATTGATGTG
TAAGGGAGGGGAGAGAGGAGGGAGGAGGAGGATCGGAAGCGGCGGCGCGG
AATTCCTACATTCTGTCCCCCATTCATTCAGGCATTGGGAGTCTTGCACA
GAGCAAGGCAAGCGGAGCTCGCAGTACCCTGTTCTCCTTCTTTTTTCTTA
CCCAAAATCTACCTCTTTTCACAACCCGAAGGCCATCTCCTCCGCCCGCT
TTTCTCCAAGTTCCCATCCGGCTCCCGCATCAGCCCAGGAAGCAGCGATG
GCCCGCCTGCCTGTCACCCCCGTCCTCCTGCTCCTGACCTTTGGAGCAGG
GGCCTATATTGCCTTTGAGACCTTCAAAGCCCTTGGCGGCAAGACGCTGA
AAGATCTTAAGACCCTCCCTCTCTTCGCCTACCACCCCATCCTGATGGTA
GCCTCCTGGCTGTTCTTCGCCCCTCTTTCCTGGAGCCTCATCTTGGTGCG
CGGCAGGACCTTGGTCAAAAGCAAGCGTGTGATTTTGACGCAGCTGCACG
CTGCAAGCATGTTTTTGGCGGTAGTCTGCTGGGGCTTGGCCCTCGGGTCT
ATTTTTGTTCACAAGCAAAAATTGGAGAAGGAGCATTTCCAGAGTCCGCA
TAGCATGATGGGCGCGAGTGTCTTTGTTTTGATTGTTTCGAGCTATATGT
CAGCGCTTTACAACGTAGTTGACTCAAAGTCCAAGGAAAAGGTCAACTTT
AATTGGACAAGCAAGATTCACAAAAACATCGGGAAAGTGGCCCTGTGCAT
GACAGGGTTAGCTATCTCCACGGGTCTGTTCACTCGATGGGGCAAGACAA
CTTTTGAGGATAAGAACATACGGACCGGTTTGGCATTGTGCATCATTGTA
CCCCAGCTGATTGTGGCTTTGGATGTAATGACGCGATCCGCAGGGAAGGA
GGACAAGCGGAAAGCCAAATAGGAGGAGGTAGGGAGGGAGGAAGGGAAAT
GAGATGAATTCATGAATGAAACTGTCATGCTAGGGGTTTGAAGGTGGTGA
AAGGATAGTCAACGGGTGTGAAAGCGAAGAGAGGGAGGAAAGAAAATCTG
CATTGAGAGGTTGAGAGTCGTGGATGAGTTTGGTGGCTGGAGGAAGGAGG
GGGTTCTGACGGAATGATTTGAGACTTCGAAATGACTGCCGGAAAAAAAG
AAAAATCTATTCAGTCTGTGCCTCAAGCATATATTTCACACGATGTACTG
CATTCACTACGGACTCCGTAGGGATGGCGAGGGACTAGGAGGAGGAAGAG
ACGCCGCCAGCAATCGTCAATCATCTCTGCGGCACTTTCATAAGCACACT
TGGCGTAGATGGGCTAGAACATCAACAAGATTGAGTGACAAGAATAACCC
TACTGTTATAAACCTCTTGAAGAGTGAGTACGCATACCTTTGAAATGTAC
GCCCGTGCGAGGAGCGTGTGGGCCCGCAAAGGGCAGACTTGATAATTCTT
TTTCCTGTAGTTTCCTACAACCCTAAAATTATCTCGTGCCACCTAATCCG
CAAGAAAATGCGACCTACCAGAGCACAAGCGTGCCTCCTGCTGGGATTGC
ACACGGGGGAAAGCTTTCCAACAATAAATTGTTGCATATCCTTCCCTTAT
TTTTCAGAGTTTTCTAGTGGCTTTCAAAGTTGACAGGTTGTTAAAAGGAA
GTAAAATGAATGCAAGCGAATGGATACTGCAAGGAAAAAACTCTTGTCCT
GTTTGAAATTGACAAGACGAAAGAGAAAGTTAGAAATATAATCAATTTTC
AATCCTGCGCAGTTAGTAGAACAGACAAGTTGGAATCTGGGCCATACTGC
CCAGCAGTCCAGAAGAGACGGGCACACACCGGTGCGGTAAACGAAAGCAA
TATGCAACGTCTCCTCCATCCTTGCGTTTACGCCATATAGTCAGCCATGC
CACAGACAACCAACTGACACGCATATCACCACGACATAATGGAAAGCTAT
TGCTCAGAGGTCTCTGATGCACAGTATAATTTGTGTACAAATTTGTACCC
AGACTCTGCCTTCTGCGCTTCTATCACCGTCATAGTCGTCATCACTTTTG
CCCATACGCCTTTCGAACCGAACAAACACAC

protein sequence of NO17G01220.1

>NO17G01220.1-protein ID=NO17G01220.1-protein|Name=NO17G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MCKGGERGGRRRIGSGGAEFLHSVPHSFRHWESCTEQGKRSSQYPVLLLF
SYPKSTSFHNPKAISSARFSPSSHPAPASAQEAAMARLPVTPVLLLLTFG
AGAYIAFETFKALGGKTLKDLKTLPLFAYHPILMVASWLFFAPLSWSLIL
VRGRTLVKSKRVILTQLHAASMFLAVVCWGLALGSIFVHKQKLEKEHFQS
PHSMMGASVFVLIVSSYMSALYNVVDSKSKEKVNFNWTSKIHKNIGKVAL
CMTGLAISTGLFTRWGKTTFEDKNIRTGLALCIIVPQLIVALDVMTRSAG
KEDKRKAK*

mRNA from alignment at chr17:381744..384371-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G01220.1 ID=NO17G01220.1|Name=NO17G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2628bp|location=Sequence derived from alignment at chr17:381744..384371- (Nannochloropsis oceanica)
CCTGCGGGGACTTTTTTGGAGTCTTTGGAGATGCAGGGAAGGAGCGGATC
AGAACGTGCATCTCTCGCCCGGTTAATGAATCGAATCGATAATAATGATA
GAAAGGACATGGAAGTACATGCAATCACCAAGTTTAATAATGCCATGTCC
TGATGGCCTGTTGCAGCACGCTGCGTCACGGATTGTGTGTGATTGATGTG
TAAGGGAGGGGAGAGAGGAGGGAGGAGGAGGATCGGAAGCGGCGGCGCGG
AATTCCTACATTCTGTCCCCCATTCATTCAGGCATTGGGAGTCTTGCACA
GAGCAAGGCAAGCGGAGCTCGCAGTACCCTGTTCTCCTTCTTTTTTCTTA
CCCAAAATCTACCTCTTTTCACAACCCGAAGGCCATCTCCTCCGCCCGCT
TTTCTCCAAGTTCCCATCCGGCTCCCGCATCAGCCCAGGAAGCAGCGATG
GCCCGCCTGCCTGTCACCCCCGTCCTCCTGCTCCTGACCTTTGGAGCAGG
GGCCTATATTGCCTTTGAGACCTTCAAAGCCCTTGGCGGCAAGACGCTGA
AAGAGTGAGTACTTGTGGGTGGGCGTTGGAGGTGTGTGGAGGTAATGGGG
AAGCGGTTGTTCACTTTACTTTCACAAAACTGCACGACTTATTATTAATC
CACCTCTTCCTCGGTTACTGTAGCCAAGGGGGAGGGAAGGTAGAGTTTCC
CTTTCTTCCGCATCGTATGGTGGATGGCAAATTATCCACTGACTTCCAAT
TCCATCCTTATTCTCTCTTCCATCCCCACAGTCTTAAGACCCTCCCTCTC
TTCGCCTACCACCCCATCCTGATGGTAGCCTCCTGGCTGTTCTTCGCCCC
TCTTTCCTGGAGCCTCATCTTGGTGCGCGGCAGGACCTTGGTCAAAAGCA
AGCGTGTGATTTTGACGCAGCTGCACGCTGCAAGCATGTTTTTGGCGGTA
GTCTGCTGGGGCTTGGCCCTCGGGTCTATTTTTGTTCACAAGCAAAAATT
GGAGAAGGAGCATTTCCAGAGTCCGCATAGCATGATGGGCGCGAGTGTCT
TTGTTTTGATTGTTTCGAGCTATATGTCAGCGCTTTACAACGTAGTTGAC
TCAAAGTCCAAGGAAAAGGTAGGAACTAGAGGTGGTGTTTCAACTAGGAG
GTTTCCTCTTCTTATTTTGTGCTTCTGCTCTCAGCACACATACACTAACC
GTTGCTTTCCATACATCTATGGTCTGAACTCCCGTCAGGTCAACTTTAAT
TGGACAAGCAAGATTCACAAAAACATCGGGAAAGTGGCCCTGTGCATGAC
AGGGTTAGCTATCTCCACGGGTCTGTTCACTCGATGGGGCAAGACAACTT
TTGAGGATAAGAACATACGGACCGGTTTGGCATTGTGCATCATTGTACCC
CAGCTGATTGTGGCTTTGGATGTAATGACGCGATCCGCAGGGAAGGAGGA
CAAGCGGAAAGCCAAATAGGAGGAGGTAGGGAGGGAGGAAGGGAAATGAG
ATGAATTCATGAATGAAACTGTCATGCTAGGGGTTTGAAGGTGGTGAAAG
GATAGTCAACGGGTGTGAAAGCGAAGAGAGGGAGGAAAGAAAATCTGCAT
TGAGAGGTTGAGAGTCGTGGATGAGTTTGGTGGCTGGAGGAAGGAGGGGG
TTCTGACGGAATGATTTGAGACTTCGAAATGACTGCCGGAAAAAAAGAAA
AATCTATTCAGTCTGTGCCTCAAGCATATATTTCACACGATGTACTGCAT
TCACTACGGACTCCGTAGGGATGGCGAGGGACTAGGAGGAGGAAGAGACG
CCGCCAGCAATCGTCAATCATCTCTGCGGCACTTTCATAAGCACACTTGG
CGTAGATGGGCTAGAACATCAACAAGATTGAGTGACAAGAATAACCCTAC
TGTTATAAACCTCTTGAAGAGTGAGTACGCATACCTTTGAAATGTACGCC
CGTGCGAGGAGCGTGTGGGCCCGCAAAGGGCAGACTTGATAATTCTTTTT
CCTGTAGTTTCCTACAACCCTAAAATTATCTCGTGCCACCTAATCCGCAA
GAAAATGCGACCTACCAGAGCACAAGCGTGCCTCCTGCTGGGATTGCACA
CGGGGGAAAGCTTTCCAACAATAAATTGTTGCATATCCTTCCCTTATTTT
TCAGAGTTTTCTAGTGGCTTTCAAAGTTGACAGGTTGTTAAAAGGAAGTA
AAATGAATGCAAGCGAATGGATACTGCAAGGAAAAAACTCTTGTCCTGTT
TGAAATTGACAAGACGAAAGAGAAAGTTAGAAATATAATCAATTTTCAAT
CCTGCGCAGTTAGTAGAACAGACAAGTTGGAATCTGGGCCATACTGCCCA
GCAGTCCAGAAGAGACGGGCACACACCGGTGCGGTAAACGAAAGCAATAT
GCAACGTCTCCTCCATCCTTGCGTTTACGCCATATAGTCAGCCATGCCAC
AGACAACCAACTGACACGCATATCACCACGACATAATGGAAAGCTATTGC
TCAGAGGTCTCTGATGCACAGTATAATTTGTGTACAAATTTGTACCCAGA
CTCTGCCTTCTGCGCTTCTATCACCGTCATAGTCGTCATCACTTTTGCCC
ATACGCCTTTCGAACCGAACAAACACAC

Coding sequence (CDS) from alignment at chr17:381744..384371-

>NO17G01220.1 ID=NO17G01220.1|Name=NO17G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr17:381744..384371- (Nannochloropsis oceanica)
ATGTGTAAGGGAGGGGAGAGAGGAGGGAGGAGGAGGATCGGAAGCGGCGG
CGCGGAATTCCTACATTCTGTCCCCCATTCATTCAGGCATTGGGAGTCTT
GCACAGAGCAAGGCAAGCGGAGCTCGCAGTACCCTGTTCTCCTTCTTTTT
TCTTACCCAAAATCTACCTCTTTTCACAACCCGAAGGCCATCTCCTCCGC
CCGCTTTTCTCCAAGTTCCCATCCGGCTCCCGCATCAGCCCAGGAAGCAG
CGATGGCCCGCCTGCCTGTCACCCCCGTCCTCCTGCTCCTGACCTTTGGA
GCAGGGGCCTATATTGCCTTTGAGACCTTCAAAGCCCTTGGCGGCAAGAC
GCTGAAAGATCTTAAGACCCTCCCTCTCTTCGCCTACCACCCCATCCTGA
TGGTAGCCTCCTGGCTGTTCTTCGCCCCTCTTTCCTGGAGCCTCATCTTG
GTGCGCGGCAGGACCTTGGTCAAAAGCAAGCGTGTGATTTTGACGCAGCT
GCACGCTGCAAGCATGTTTTTGGCGGTAGTCTGCTGGGGCTTGGCCCTCG
GGTCTATTTTTGTTCACAAGCAAAAATTGGAGAAGGAGCATTTCCAGAGT
CCGCATAGCATGATGGGCGCGAGTGTCTTTGTTTTGATTGTTTCGAGCTA
TATGTCAGCGCTTTACAACGTAGTTGACTCAAAGTCCAAGGAAAAGGTCA
ACTTTAATTGGACAAGCAAGATTCACAAAAACATCGGGAAAGTGGCCCTG
TGCATGACAGGGTTAGCTATCTCCACGGGTCTGTTCACTCGATGGGGCAA
GACAACTTTTGAGGATAAGAACATACGGACCGGTTTGGCATTGTGCATCA
TTGTACCCCAGCTGATTGTGGCTTTGGATGTAATGACGCGATCCGCAGGG
AAGGAGGACAAGCGGAAAGCCAAATAG

Synonyms

Publications