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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:381744..384371 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01220.2 vs.
Match: EWM24329.1 (cytochrome b-561 domain containing 2 [Nannochloropsis gaditana]) HSP 1 Score: 151.8 bits (382), Expect = 4.000e-33 Identity = 98/214 (45.79%), Postives = 121/214 (56.54%), Query Frame = 0
Query: 134 MVASWLFFAPLSWSLILVRGRTLVKSKRVILTQLHAASMFLAVVCWGLALGSIFVHKQKLEKEHFQSPHSMMGASVFVLIVSSYMSALYNVVDSKSKE-KVGTRGGVSTRRFPLLILCFCSQHTYTNRCFPYIYGLNSRQVNFNWTSKIHKNIGKVALCMTGLAISTGLFTRWGKTTFEDKNIRTGLALCIIVPQLIVALDVMTRSAGKEDKRK 347
MV SWLFFAPLSWSLIL RG T++K+KR++LTQLHAASMFLAVVCW AL SIF+HK L KEHF S HSM+GASVFVL++ SY SA YNVVD ++KE K + + F GL +R + K + IG +ALC+ IVPQ++VALDVM R AG +++RK
Sbjct: 1 MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKT---------LGKAALVASGFAISTGLFTRWGKTTFEDK-NVRIG-LALCI-------------------------------IVPQVVVALDVMARFAGHKNERK 172
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01220.2 ID=NO17G01220.2|Name=NO17G01220.2|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
CCTGCGGGGACTTTTTTGGAGTCTTTGGAGATGCAGGGAAGGAGCGGATC
AGAACGTGCATCTCTCGCCCGGTTAATGAATCGAATCGATAATAATGATA
GAAAGGACATGGAAGTACATGCAATCACCAAGTTTAATAATGCCATGTCC
TGATGGCCTGTTGCAGCACGCTGCGTCACGGATTGTGTGTGATTGATGTG
TAAGGGAGGGGAGAGAGGAGGGAGGAGGAGGATCGGAAGCGGCGGCGCGG
AATTCCTACATTCTGTCCCCCATTCATTCAGGCATTGGGAGTCTTGCACA
GAGCAAGGCAAGCGGAGCTCGCAGTACCCTGTTCTCCTTCTTTTTTCTTA
CCCAAAATCTACCTCTTTTCACAACCCGAAGGCCATCTCCTCCGCCCGCT
TTTCTCCAAGTTCCCATCCGGCTCCCGCATCAGCCCAGGAAGCAGCGATG
GCCCGCCTGCCTGTCACCCCCGTCCTCCTGCTCCTGACCTTTGGAGCAGG
GGCCTATATTGCCTTTGAGACCTTCAAAGCCCTTGGCGGCAAGACGCTGA
AAGATCTTAAGACCCTCCCTCTCTTCGCCTACCACCCCATCCTGATGGTA
GCCTCCTGGCTGTTCTTCGCCCCTCTTTCCTGGAGCCTCATCTTGGTGCG
CGGCAGGACCTTGGTCAAAAGCAAGCGTGTGATTTTGACGCAGCTGCACG
CTGCAAGCATGTTTTTGGCGGTAGTCTGCTGGGGCTTGGCCCTCGGGTCT
ATTTTTGTTCACAAGCAAAAATTGGAGAAGGAGCATTTCCAGAGTCCGCA
TAGCATGATGGGCGCGAGTGTCTTTGTTTTGATTGTTTCGAGCTATATGT
CAGCGCTTTACAACGTAGTTGACTCAAAGTCCAAGGAAAAGGTAGGAACT
AGAGGTGGTGTTTCAACTAGGAGGTTTCCTCTTCTTATTTTGTGCTTCTG
CTCTCAGCACACATACACTAACCGTTGCTTTCCATACATCTATGGTCTGA
ACTCCCGTCAGGTCAACTTTAATTGGACAAGCAAGATTCACAAAAACATC
GGGAAAGTGGCCCTGTGCATGACAGGGTTAGCTATCTCCACGGGTCTGTT
CACTCGATGGGGCAAGACAACTTTTGAGGATAAGAACATACGGACCGGTT
TGGCATTGTGCATCATTGTACCCCAGCTGATTGTGGCTTTGGATGTAATG
ACGCGATCCGCAGGGAAGGAGGACAAGCGGAAAGCCAAATAGGAGGAGGT
AGGGAGGGAGGAAGGGAAATGAGATGAATTCATGAATGAAACTGTCATGC
TAGGGGTTTGAAGGTGGTGAAAGGATAGTCAACGGGTGTGAAAGCGAAGA
GAGGGAGGAAAGAAAATCTGCATTGAGAGGTTGAGAGTCGTGGATGAGTT
TGGTGGCTGGAGGAAGGAGGGGGTTCTGACGGAATGATTTGAGACTTCGA
AATGACTGCCGGAAAAAAAGAAAAATCTATTCAGTCTGTGCCTCAAGCAT
ATATTTCACACGATGTACTGCATTCACTACGGACTCCGTAGGGATGGCGA
GGGACTAGGAGGAGGAAGAGACGCCGCCAGCAATCGTCAATCATCTCTGC
GGCACTTTCATAAGCACACTTGGCGTAGATGGGCTAGAACATCAACAAGA
TTGAGTGACAAGAATAACCCTACTGTTATAAACCTCTTGAAGAGTGAGTA
CGCATACCTTTGAAATGTACGCCCGTGCGAGGAGCGTGTGGGCCCGCAAA
GGGCAGACTTGATAATTCTTTTTCCTGTAGTTTCCTACAACCCTAAAATT
ATCTCGTGCCACCTAATCCGCAAGAAAATGCGACCTACCAGAGCACAAGC
GTGCCTCCTGCTGGGATTGCACACGGGGGAAAGCTTTCCAACAATAAATT
GTTGCATATCCTTCCCTTATTTTTCAGAGTTTTCTAGTGGCTTTCAAAGT
TGACAGGTTGTTAAAAGGAAGTAAAATGAATGCAAGCGAATGGATACTGC
AAGGAAAAAACTCTTGTCCTGTTTGAAATTGACAAGACGAAAGAGAAAGT
TAGAAATATAATCAATTTTCAATCCTGCGCAGTTAGTAGAACAGACAAGT
TGGAATCTGGGCCATACTGCCCAGCAGTCCAGAAGAGACGGGCACACACC
GGTGCGGTAAACGAAAGCAATATGCAACGTCTCCTCCATCCTTGCGTTTA
CGCCATATAGTCAGCCATGCCACAGACAACCAACTGACACGCATATCACC
ACGACATAATGGAAAGCTATTGCTCAGAGGTCTCTGATGCACAGTATAAT
TTGTGTACAAATTTGTACCCAGACTCTGCCTTCTGCGCTTCTATCACCGT
CATAGTCGTCATCACTTTTGCCCATACGCCTTTCGAACCGAACAAACACA
C back to topprotein sequence of NO17G01220.2 >NO17G01220.2-protein ID=NO17G01220.2-protein|Name=NO17G01220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MCKGGERGGRRRIGSGGAEFLHSVPHSFRHWESCTEQGKRSSQYPVLLLF
SYPKSTSFHNPKAISSARFSPSSHPAPASAQEAAMARLPVTPVLLLLTFG
AGAYIAFETFKALGGKTLKDLKTLPLFAYHPILMVASWLFFAPLSWSLIL
VRGRTLVKSKRVILTQLHAASMFLAVVCWGLALGSIFVHKQKLEKEHFQS
PHSMMGASVFVLIVSSYMSALYNVVDSKSKEKVGTRGGVSTRRFPLLILC
FCSQHTYTNRCFPYIYGLNSRQVNFNWTSKIHKNIGKVALCMTGLAISTG
LFTRWGKTTFEDKNIRTGLALCIIVPQLIVALDVMTRSAGKEDKRKAK* back to topmRNA from alignment at chr17:381744..384371- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01220.2 ID=NO17G01220.2|Name=NO17G01220.2|organism=Nannochloropsis oceanica|type=mRNA|length=2628bp|location=Sequence derived from alignment at chr17:381744..384371- (Nannochloropsis oceanica)
CCTGCGGGGACTTTTTTGGAGTCTTTGGAGATGCAGGGAAGGAGCGGATC
AGAACGTGCATCTCTCGCCCGGTTAATGAATCGAATCGATAATAATGATA
GAAAGGACATGGAAGTACATGCAATCACCAAGTTTAATAATGCCATGTCC
TGATGGCCTGTTGCAGCACGCTGCGTCACGGATTGTGTGTGATTGATGTG
TAAGGGAGGGGAGAGAGGAGGGAGGAGGAGGATCGGAAGCGGCGGCGCGG
AATTCCTACATTCTGTCCCCCATTCATTCAGGCATTGGGAGTCTTGCACA
GAGCAAGGCAAGCGGAGCTCGCAGTACCCTGTTCTCCTTCTTTTTTCTTA
CCCAAAATCTACCTCTTTTCACAACCCGAAGGCCATCTCCTCCGCCCGCT
TTTCTCCAAGTTCCCATCCGGCTCCCGCATCAGCCCAGGAAGCAGCGATG
GCCCGCCTGCCTGTCACCCCCGTCCTCCTGCTCCTGACCTTTGGAGCAGG
GGCCTATATTGCCTTTGAGACCTTCAAAGCCCTTGGCGGCAAGACGCTGA
AAGAGTGAGTACTTGTGGGTGGGCGTTGGAGGTGTGTGGAGGTAATGGGG
AAGCGGTTGTTCACTTTACTTTCACAAAACTGCACGACTTATTATTAATC
CACCTCTTCCTCGGTTACTGTAGCCAAGGGGGAGGGAAGGTAGAGTTTCC
CTTTCTTCCGCATCGTATGGTGGATGGCAAATTATCCACTGACTTCCAAT
TCCATCCTTATTCTCTCTTCCATCCCCACAGTCTTAAGACCCTCCCTCTC
TTCGCCTACCACCCCATCCTGATGGTAGCCTCCTGGCTGTTCTTCGCCCC
TCTTTCCTGGAGCCTCATCTTGGTGCGCGGCAGGACCTTGGTCAAAAGCA
AGCGTGTGATTTTGACGCAGCTGCACGCTGCAAGCATGTTTTTGGCGGTA
GTCTGCTGGGGCTTGGCCCTCGGGTCTATTTTTGTTCACAAGCAAAAATT
GGAGAAGGAGCATTTCCAGAGTCCGCATAGCATGATGGGCGCGAGTGTCT
TTGTTTTGATTGTTTCGAGCTATATGTCAGCGCTTTACAACGTAGTTGAC
TCAAAGTCCAAGGAAAAGGTAGGAACTAGAGGTGGTGTTTCAACTAGGAG
GTTTCCTCTTCTTATTTTGTGCTTCTGCTCTCAGCACACATACACTAACC
GTTGCTTTCCATACATCTATGGTCTGAACTCCCGTCAGGTCAACTTTAAT
TGGACAAGCAAGATTCACAAAAACATCGGGAAAGTGGCCCTGTGCATGAC
AGGGTTAGCTATCTCCACGGGTCTGTTCACTCGATGGGGCAAGACAACTT
TTGAGGATAAGAACATACGGACCGGTTTGGCATTGTGCATCATTGTACCC
CAGCTGATTGTGGCTTTGGATGTAATGACGCGATCCGCAGGGAAGGAGGA
CAAGCGGAAAGCCAAATAGGAGGAGGTAGGGAGGGAGGAAGGGAAATGAG
ATGAATTCATGAATGAAACTGTCATGCTAGGGGTTTGAAGGTGGTGAAAG
GATAGTCAACGGGTGTGAAAGCGAAGAGAGGGAGGAAAGAAAATCTGCAT
TGAGAGGTTGAGAGTCGTGGATGAGTTTGGTGGCTGGAGGAAGGAGGGGG
TTCTGACGGAATGATTTGAGACTTCGAAATGACTGCCGGAAAAAAAGAAA
AATCTATTCAGTCTGTGCCTCAAGCATATATTTCACACGATGTACTGCAT
TCACTACGGACTCCGTAGGGATGGCGAGGGACTAGGAGGAGGAAGAGACG
CCGCCAGCAATCGTCAATCATCTCTGCGGCACTTTCATAAGCACACTTGG
CGTAGATGGGCTAGAACATCAACAAGATTGAGTGACAAGAATAACCCTAC
TGTTATAAACCTCTTGAAGAGTGAGTACGCATACCTTTGAAATGTACGCC
CGTGCGAGGAGCGTGTGGGCCCGCAAAGGGCAGACTTGATAATTCTTTTT
CCTGTAGTTTCCTACAACCCTAAAATTATCTCGTGCCACCTAATCCGCAA
GAAAATGCGACCTACCAGAGCACAAGCGTGCCTCCTGCTGGGATTGCACA
CGGGGGAAAGCTTTCCAACAATAAATTGTTGCATATCCTTCCCTTATTTT
TCAGAGTTTTCTAGTGGCTTTCAAAGTTGACAGGTTGTTAAAAGGAAGTA
AAATGAATGCAAGCGAATGGATACTGCAAGGAAAAAACTCTTGTCCTGTT
TGAAATTGACAAGACGAAAGAGAAAGTTAGAAATATAATCAATTTTCAAT
CCTGCGCAGTTAGTAGAACAGACAAGTTGGAATCTGGGCCATACTGCCCA
GCAGTCCAGAAGAGACGGGCACACACCGGTGCGGTAAACGAAAGCAATAT
GCAACGTCTCCTCCATCCTTGCGTTTACGCCATATAGTCAGCCATGCCAC
AGACAACCAACTGACACGCATATCACCACGACATAATGGAAAGCTATTGC
TCAGAGGTCTCTGATGCACAGTATAATTTGTGTACAAATTTGTACCCAGA
CTCTGCCTTCTGCGCTTCTATCACCGTCATAGTCGTCATCACTTTTGCCC
ATACGCCTTTCGAACCGAACAAACACAC back to topCoding sequence (CDS) from alignment at chr17:381744..384371- >NO17G01220.2 ID=NO17G01220.2|Name=NO17G01220.2|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr17:381744..384371- (Nannochloropsis oceanica)
ATGTGTAAGGGAGGGGAGAGAGGAGGGAGGAGGAGGATCGGAAGCGGCGG
CGCGGAATTCCTACATTCTGTCCCCCATTCATTCAGGCATTGGGAGTCTT
GCACAGAGCAAGGCAAGCGGAGCTCGCAGTACCCTGTTCTCCTTCTTTTT
TCTTACCCAAAATCTACCTCTTTTCACAACCCGAAGGCCATCTCCTCCGC
CCGCTTTTCTCCAAGTTCCCATCCGGCTCCCGCATCAGCCCAGGAAGCAG
CGATGGCCCGCCTGCCTGTCACCCCCGTCCTCCTGCTCCTGACCTTTGGA
GCAGGGGCCTATATTGCCTTTGAGACCTTCAAAGCCCTTGGCGGCAAGAC
GCTGAAAGATCTTAAGACCCTCCCTCTCTTCGCCTACCACCCCATCCTGA
TGGTAGCCTCCTGGCTGTTCTTCGCCCCTCTTTCCTGGAGCCTCATCTTG
GTGCGCGGCAGGACCTTGGTCAAAAGCAAGCGTGTGATTTTGACGCAGCT
GCACGCTGCAAGCATGTTTTTGGCGGTAGTCTGCTGGGGCTTGGCCCTCG
GGTCTATTTTTGTTCACAAGCAAAAATTGGAGAAGGAGCATTTCCAGAGT
CCGCATAGCATGATGGGCGCGAGTGTCTTTGTTTTGATTGTTTCGAGCTA
TATGTCAGCGCTTTACAACGTAGTTGACTCAAAGTCCAAGGAAAAGGTAG
GAACTAGAGGTGGTGTTTCAACTAGGAGGTTTCCTCTTCTTATTTTGTGC
TTCTGCTCTCAGCACACATACACTAACCGTTGCTTTCCATACATCTATGG
TCTGAACTCCCGTCAGGTCAACTTTAATTGGACAAGCAAGATTCACAAAA
ACATCGGGAAAGTGGCCCTGTGCATGACAGGGTTAGCTATCTCCACGGGT
CTGTTCACTCGATGGGGCAAGACAACTTTTGAGGATAAGAACATACGGAC
CGGTTTGGCATTGTGCATCATTGTACCCCAGCTGATTGTGGCTTTGGATG
TAATGACGCGATCCGCAGGGAAGGAGGACAAGCGGAAAGCCAAATAG back to top
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