NO16G01560, NO16G01560 (gene) Nannochloropsis oceanica

Overview
NameNO16G01560
Unique NameNO16G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1768
Alignment locationchr16:470578..472345 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:470578..472345 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01560 vs. NCBI_GenBank
Match: EWM23959.1 (hypothetical protein Naga_100027g16 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 6.500e-11
Identity = 76/289 (26.30%), Postives = 116/289 (40.14%), Query Frame = 0 
Query:   11 MPAAAT-AQPLSTAAAYCRTVPP-TQAPKQLFSHKNSDDDEQELCSSPTLLGPAADPFLRRAWRCFRVRLAQLAYRRHLLETINTMTTTSTCLTSPYSDHGSSNHHHRSCFGSTFSSGSKSECNRVRQTYACSHERASILELLRLAKKSNYFSVQCFFAHCLQVWGHRSXXXXXXXXXXXXXXXXXXXXXXXSLSIKFQSDHCP-------AVLDRVAQAWFLRLSLTRWRSRGQRHHLIDMALRFHHKNLAHLALSTLFVNRRRKQYMQLEGARADAFHVRRLVAWWE 291
            MP  +T +  L+ +A+Y +++    + P + F    S +D  + C SP +     +P L   W  FR+RLAQ   RR LL+     +TT T                                           E+    E L  +      S Q F   CL+ W H                         S      +   P       A L RV +AWFLR  L  W+ RG+R+H + +A RF  +N++HLAL+ LF+ R R++  ++   + DAFH RRL++ W+
Sbjct:    1 MPVESTISSALAVSASYPKSLEACAKLPARPFDDSFSGEDVSD-CHSPGI-----NPCLSNGWERFRLRLAQRTARRTLLD---AKSTTVTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREKMLTHERLHRSLLCGRVSAQSFRRQCLRAWEHGQAITGSFSQSFGNGIDAFTYTKRESTLFSRSNSSLPGSTLAPAAFLSRVGEAWFLRRWLACWQRRGRRYHQLQIAGRFSDRNMSHLALANLFLYRGRRRRARMAEQKGDAFHARRLLSCWD 280
The following BLAST results are available for this feature:
BLAST of NO16G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23959.16.500e-1126.30hypothetical protein Naga_100027g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01560.1NO16G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100027g16gene6488Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01560.1NO16G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01560 ID=NO16G01560|Name=NO16G01560|organism=Nannochloropsis oceanica|type=gene|length=1768bp
ATGACATCAGAGCCGCACACACCTCTGCTCATGCCCGCAGCGGCTACGGC
GCAACCCCTTTCCACCGCTGCAGCTTACTGTCGAACAGTTCCACCTACTC
AAGCACCCAAACAACTTTTCAGTCATAAGAACAGCGACGACGATGAGCAA
GAGCTCTGCTCCTCCCCCACTCTCCTTGGTCCAGCAGCTGATCCCTTTCT
CCGGAGGGCATGGAGGTGCTTCCGCGTCCGCCTTGCCCAGCTGGCTTACC
GAAGACATCTGTTGGAAACTATCAACACGATGACAACGACATCCACGTGC
TTGACGAGCCCCTATTCAGACCACGGTAGCAGCAACCACCACCATCGCAG
CTGCTTCGGCAGTACCTTCAGCAGCGGAAGCAAAAGCGAATGCAACAGAG
TGCGACAGACATATGCATGTAGCCACGAAAGGGCTTCGATCCTCGAGCTA
TTGCGCCTCGCAAAGAAATCAAACTATTTCTCAGTGCAATGCTTTTTCGC
GCATTGCCTGCAGGTGTGGGGTCATCGCAGCAGCAGCGCACCTCCACCCA
TCCTTTCTTCCCTCTCCTTTTCGTCGTCCTCTTCTAGCCCCCCCCCCTTC
AGCCTCTCCATCAAATTTCAATCAGATCACTGTCCCGCGGTTCTAGACCG
CGTCGCTCAAGCGTGGTTTTTGCGACTATCGCTCACTCGGTGGCGTTCAC
GTGGCCAACGCCACCACCTTATTGATATGGCTCTGCGTTTCCATCACAAG
AATTTAGCTCATTTGGCCCTGAGTACGTTGTTTGTCAATCGTCGGCGAAA
ACAATATATGCAATTAGAGGGGGCGAGGGCAGATGCCTTTCATGTTCGGC
GACTTGTTGCATGGTGGGAGCCCTCGGCCAAGGAAAGAAGGAAGCAGCAG
CATCAGCAAAAACAACAGCAGCGGCAAAAGCAGCAGCAGCAGGAACAGCA
GCGTGATTTTCCTGTGTCTTTACCCGATGTTGACATCATGTTGCACTCCA
ACTCCTCTGATAGTACCTCATCATGGCTGTCCTCGCCCTTCTCCTTGTCG
TCCATGCCGGGGATGCGAATTGACATGGGCATTTGCGTCGAAGGCACTCT
CTCCGTCCCATCGTTTTCAGCACCCCGTGACAGCAAGGGAGTAGAAAACG
AAGACCATCCCCACCCCGACGAATCCTCTTTCTTTCTCCCTCCCCTACCC
GAGATACGCCTACTCCAACACCGCGTCTTGGCCGCCTTGGGCACTAACCT
CAACCGCCACATGCACTgtacaatagcagaaaatctctttactaatcatc
agcatcatcgatatttgcgacgctggaccaggcgaagacgcactcatgca
tcgatccagcgagctaatttcatcgcaacacgagcgcacaaattacacac
atgtcgacgagccctcccgctccttctcctccgtacaaacgcccaacgac
tgcaatcaacatgtatttacacagccagCCTTGCCTGGGCCCGTCGTCGC
GCCACCACCGCACTATGGCGACTCAGCCTATGCGCACGACAACATAACGT
CCATCAAAGAGCCATCGAAATCATGCTTCAATCGCAACGTCTTCACGCAG
TCACTCGCGCCATGTCCCTCCTTTACGCTTCAGCCCGAAAGGTGCTCCTT
CACTTGCGTGTTTTCACAATTGTTCATCGAAAAGAGAGCTGCCGACGGGC
CCTGCGACGATGGCAACGCAGAGCAGCCGCGGCAGCAGTCGGGCGCGTAC
GGCAGCAGAAGGCGGTAA
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protein sequence of NO16G01560.1

>NO16G01560.1-protein ID=NO16G01560.1-protein|Name=NO16G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MTSEPHTPLLMPAAATAQPLSTAAAYCRTVPPTQAPKQLFSHKNSDDDEQ
ELCSSPTLLGPAADPFLRRAWRCFRVRLAQLAYRRHLLETINTMTTTSTC
LTSPYSDHGSSNHHHRSCFGSTFSSGSKSECNRVRQTYACSHERASILEL
LRLAKKSNYFSVQCFFAHCLQVWGHRSSSAPPPILSSLSFSSSSSSPPPF
SLSIKFQSDHCPAVLDRVAQAWFLRLSLTRWRSRGQRHHLIDMALRFHHK
NLAHLALSTLFVNRRRKQYMQLEGARADAFHVRRLVAWWEPSAKERRKQQ
HQQKQQQRQKQQQQEQQRDFPVSLPDVDIMLHSNSSDSTSSWLSSPFSLS
SMPGMRIDMGICVEGTLSVPSFSAPRDSKGVENEDHPHPDESSFFLPPLP
EIRLLQHRVLAALGTNLNRHMHSLPGPVVAPPPHYGDSAYAHDNITSIKE
PSKSCFNRNVFTQSLAPCPSFTLQPERCSFTCVFSQLFIEKRAADGPCDD
GNAEQPRQQSGAYGSRRR*
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Synonyms
Publications