NO16G01560.1, NO16G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01560.1
Unique NameNO16G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1557
Alignment locationchr16:470578..472345 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:470578..472345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01560.1 vs.
Match: EWM23959.1 (hypothetical protein Naga_100027g16 [Nannochloropsis gaditana])

HSP 1 Score: 112.5 bits (280), Expect = 4.000e-21
Identity = 98/306 (32.03%), Postives = 149/306 (48.69%), Query Frame = 0 
Query:   11 MPAAAT-AQPLSTAAAYCRTVPP-TQAPKQLFSHKNSDDDEQELCSSPTLLGPAADPFLRRAWRCFRVRLAQLAYRRHLLETINTMTTTSTCLTSPYSDHGSSNHHHRSCFGSTFSSGSKSECNRVRQTYACSHERASILELLRLAKKSNYFSVQCFFAHCLQVWGHRSSSAPPPILS--------------SLSFSSSSSSPPPFSLSIKFQSDHCPAVLDRVAQAWFLRLSLTRWRSRGQRHHLIDMALRFHHKNLAHLALSTLFVNRRRKQYMQLEGARADAFHVRRLVAWWEPSAKERRKQQ 301
            MP  +T +  L+ +A+Y +++    + P + F    S +D  + C SP +     +P L   W  FR+RLAQ   RR LL+  +T  T+S+ +T      G  + HH S +   F  G      R R  +A   E+    E L  +      S Q F   CL+ W H  +       S              S  FS S+SS P  +L+         A L RV +AWFLR  L  W+ RG+R+H + +A RF  +N++HLAL+ LF+ R R++  ++   + DAFH RRL++ W+  A+ER +QQ
Sbjct:    1 MPVESTISSALAVSASYPKSLEACAKLPARPFDDSFSGEDVSD-CHSPGI-----NPCLSNGWERFRLRLAQRTARRTLLDAKSTTVTSSSTVTDLSFGSGVRHRHHSSSWSPNFGEG---RARRTRFAFAYKREKMLTHERLHRSLLCGRVSAQSFRRQCLRAWEHGQAITGSFSQSFGNGIDAFTYTKRESTLFSRSNSSLPGSTLAPA-------AFLSRVGEAWFLRRWLACWQRRGRRYHQLQIAGRFSDRNMSHLALANLFLYRGRRRRARMAEQKGDAFHARRLLSCWDFLARERLRQQ 290
The following BLAST results are available for this feature:
BLAST of NO16G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23959.14.000e-2132.03hypothetical protein Naga_100027g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01560NO16G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01560.1NO16G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01560.1.cds1NO16G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01560.1.cds2NO16G01560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01560.1 ID=NO16G01560.1|Name=NO16G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
ATGACATCAGAGCCGCACACACCTCTGCTCATGCCCGCAGCGGCTACGGC
GCAACCCCTTTCCACCGCTGCAGCTTACTGTCGAACAGTTCCACCTACTC
AAGCACCCAAACAACTTTTCAGTCATAAGAACAGCGACGACGATGAGCAA
GAGCTCTGCTCCTCCCCCACTCTCCTTGGTCCAGCAGCTGATCCCTTTCT
CCGGAGGGCATGGAGGTGCTTCCGCGTCCGCCTTGCCCAGCTGGCTTACC
GAAGACATCTGTTGGAAACTATCAACACGATGACAACGACATCCACGTGC
TTGACGAGCCCCTATTCAGACCACGGTAGCAGCAACCACCACCATCGCAG
CTGCTTCGGCAGTACCTTCAGCAGCGGAAGCAAAAGCGAATGCAACAGAG
TGCGACAGACATATGCATGTAGCCACGAAAGGGCTTCGATCCTCGAGCTA
TTGCGCCTCGCAAAGAAATCAAACTATTTCTCAGTGCAATGCTTTTTCGC
GCATTGCCTGCAGGTGTGGGGTCATCGCAGCAGCAGCGCACCTCCACCCA
TCCTTTCTTCCCTCTCCTTTTCGTCGTCCTCTTCTAGCCCCCCCCCCTTC
AGCCTCTCCATCAAATTTCAATCAGATCACTGTCCCGCGGTTCTAGACCG
CGTCGCTCAAGCGTGGTTTTTGCGACTATCGCTCACTCGGTGGCGTTCAC
GTGGCCAACGCCACCACCTTATTGATATGGCTCTGCGTTTCCATCACAAG
AATTTAGCTCATTTGGCCCTGAGTACGTTGTTTGTCAATCGTCGGCGAAA
ACAATATATGCAATTAGAGGGGGCGAGGGCAGATGCCTTTCATGTTCGGC
GACTTGTTGCATGGTGGGAGCCCTCGGCCAAGGAAAGAAGGAAGCAGCAG
CATCAGCAAAAACAACAGCAGCGGCAAAAGCAGCAGCAGCAGGAACAGCA
GCGTGATTTTCCTGTGTCTTTACCCGATGTTGACATCATGTTGCACTCCA
ACTCCTCTGATAGTACCTCATCATGGCTGTCCTCGCCCTTCTCCTTGTCG
TCCATGCCGGGGATGCGAATTGACATGGGCATTTGCGTCGAAGGCACTCT
CTCCGTCCCATCGTTTTCAGCACCCCGTGACAGCAAGGGAGTAGAAAACG
AAGACCATCCCCACCCCGACGAATCCTCTTTCTTTCTCCCTCCCCTACCC
GAGATACGCCTACTCCAACACCGCGTCTTGGCCGCCTTGGGCACTAACCT
CAACCGCCACATGCACTCCTTGCCTGGGCCCGTCGTCGCGCCACCACCGC
ACTATGGCGACTCAGCCTATGCGCACGACAACATAACGTCCATCAAAGAG
CCATCGAAATCATGCTTCAATCGCAACGTCTTCACGCAGTCACTCGCGCC
ATGTCCCTCCTTTACGCTTCAGCCCGAAAGGTGCTCCTTCACTTGCGTGT
TTTCACAATTGTTCATCGAAAAGAGAGCTGCCGACGGGCCCTGCGACGAT
GGCAACGCAGAGCAGCCGCGGCAGCAGTCGGGCGCGTACGGCAGCAGAAG
GCGGTAA
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protein sequence of NO16G01560.1

>NO16G01560.1-protein ID=NO16G01560.1-protein|Name=NO16G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MTSEPHTPLLMPAAATAQPLSTAAAYCRTVPPTQAPKQLFSHKNSDDDEQ
ELCSSPTLLGPAADPFLRRAWRCFRVRLAQLAYRRHLLETINTMTTTSTC
LTSPYSDHGSSNHHHRSCFGSTFSSGSKSECNRVRQTYACSHERASILEL
LRLAKKSNYFSVQCFFAHCLQVWGHRSSSAPPPILSSLSFSSSSSSPPPF
SLSIKFQSDHCPAVLDRVAQAWFLRLSLTRWRSRGQRHHLIDMALRFHHK
NLAHLALSTLFVNRRRKQYMQLEGARADAFHVRRLVAWWEPSAKERRKQQ
HQQKQQQRQKQQQQEQQRDFPVSLPDVDIMLHSNSSDSTSSWLSSPFSLS
SMPGMRIDMGICVEGTLSVPSFSAPRDSKGVENEDHPHPDESSFFLPPLP
EIRLLQHRVLAALGTNLNRHMHSLPGPVVAPPPHYGDSAYAHDNITSIKE
PSKSCFNRNVFTQSLAPCPSFTLQPERCSFTCVFSQLFIEKRAADGPCDD
GNAEQPRQQSGAYGSRRR*
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mRNA from alignment at chr16:470578..472345+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01560.1 ID=NO16G01560.1|Name=NO16G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp|location=Sequence derived from alignment at chr16:470578..472345+ (Nannochloropsis oceanica)
ATGACATCAGAGCCGCACACACCTCTGCTCATGCCCGCAGCGGCTACGGC
GCAACCCCTTTCCACCGCTGCAGCTTACTGTCGAACAGTTCCACCTACTC
AAGCACCCAAACAACTTTTCAGTCATAAGAACAGCGACGACGATGAGCAA
GAGCTCTGCTCCTCCCCCACTCTCCTTGGTCCAGCAGCTGATCCCTTTCT
CCGGAGGGCATGGAGGTGCTTCCGCGTCCGCCTTGCCCAGCTGGCTTACC
GAAGACATCTGTTGGAAACTATCAACACGATGACAACGACATCCACGTGC
TTGACGAGCCCCTATTCAGACCACGGTAGCAGCAACCACCACCATCGCAG
CTGCTTCGGCAGTACCTTCAGCAGCGGAAGCAAAAGCGAATGCAACAGAG
TGCGACAGACATATGCATGTAGCCACGAAAGGGCTTCGATCCTCGAGCTA
TTGCGCCTCGCAAAGAAATCAAACTATTTCTCAGTGCAATGCTTTTTCGC
GCATTGCCTGCAGGTGTGGGGTCATCGCAGCAGCAGCGCACCTCCACCCA
TCCTTTCTTCCCTCTCCTTTTCGTCGTCCTCTTCTAGCCCCCCCCCCTTC
AGCCTCTCCATCAAATTTCAATCAGATCACTGTCCCGCGGTTCTAGACCG
CGTCGCTCAAGCGTGGTTTTTGCGACTATCGCTCACTCGGTGGCGTTCAC
GTGGCCAACGCCACCACCTTATTGATATGGCTCTGCGTTTCCATCACAAG
AATTTAGCTCATTTGGCCCTGAGTACGTTGTTTGTCAATCGTCGGCGAAA
ACAATATATGCAATTAGAGGGGGCGAGGGCAGATGCCTTTCATGTTCGGC
GACTTGTTGCATGGTGGGAGCCCTCGGCCAAGGAAAGAAGGAAGCAGCAG
CATCAGCAAAAACAACAGCAGCGGCAAAAGCAGCAGCAGCAGGAACAGCA
GCGTGATTTTCCTGTGTCTTTACCCGATGTTGACATCATGTTGCACTCCA
ACTCCTCTGATAGTACCTCATCATGGCTGTCCTCGCCCTTCTCCTTGTCG
TCCATGCCGGGGATGCGAATTGACATGGGCATTTGCGTCGAAGGCACTCT
CTCCGTCCCATCGTTTTCAGCACCCCGTGACAGCAAGGGAGTAGAAAACG
AAGACCATCCCCACCCCGACGAATCCTCTTTCTTTCTCCCTCCCCTACCC
GAGATACGCCTACTCCAACACCGCGTCTTGGCCGCCTTGGGCACTAACCT
CAACCGCCACATGCACTGTACAATAGCAGAAAATCTCTTTACTAATCATC
AGCATCATCGATATTTGCGACGCTGGACCAGGCGAAGACGCACTCATGCA
TCGATCCAGCGAGCTAATTTCATCGCAACACGAGCGCACAAATTACACAC
ATGTCGACGAGCCCTCCCGCTCCTTCTCCTCCGTACAAACGCCCAACGAC
TGCAATCAACATGTATTTACACAGCCAGCCTTGCCTGGGCCCGTCGTCGC
GCCACCACCGCACTATGGCGACTCAGCCTATGCGCACGACAACATAACGT
CCATCAAAGAGCCATCGAAATCATGCTTCAATCGCAACGTCTTCACGCAG
TCACTCGCGCCATGTCCCTCCTTTACGCTTCAGCCCGAAAGGTGCTCCTT
CACTTGCGTGTTTTCACAATTGTTCATCGAAAAGAGAGCTGCCGACGGGC
CCTGCGACGATGGCAACGCAGAGCAGCCGCGGCAGCAGTCGGGCGCGTAC
GGCAGCAGAAGGCGGTAA
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Coding sequence (CDS) from alignment at chr16:470578..472345+

>NO16G01560.1 ID=NO16G01560.1|Name=NO16G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr16:470578..472345+ (Nannochloropsis oceanica)
ATGACATCAGAGCCGCACACACCTCTGCTCATGCCCGCAGCGGCTACGGC
GCAACCCCTTTCCACCGCTGCAGCTTACTGTCGAACAGTTCCACCTACTC
AAGCACCCAAACAACTTTTCAGTCATAAGAACAGCGACGACGATGAGCAA
GAGCTCTGCTCCTCCCCCACTCTCCTTGGTCCAGCAGCTGATCCCTTTCT
CCGGAGGGCATGGAGGTGCTTCCGCGTCCGCCTTGCCCAGCTGGCTTACC
GAAGACATCTGTTGGAAACTATCAACACGATGACAACGACATCCACGTGC
TTGACGAGCCCCTATTCAGACCACGGTAGCAGCAACCACCACCATCGCAG
CTGCTTCGGCAGTACCTTCAGCAGCGGAAGCAAAAGCGAATGCAACAGAG
TGCGACAGACATATGCATGTAGCCACGAAAGGGCTTCGATCCTCGAGCTA
TTGCGCCTCGCAAAGAAATCAAACTATTTCTCAGTGCAATGCTTTTTCGC
GCATTGCCTGCAGGTGTGGGGTCATCGCAGCAGCAGCGCACCTCCACCCA
TCCTTTCTTCCCTCTCCTTTTCGTCGTCCTCTTCTAGCCCCCCCCCCTTC
AGCCTCTCCATCAAATTTCAATCAGATCACTGTCCCGCGGTTCTAGACCG
CGTCGCTCAAGCGTGGTTTTTGCGACTATCGCTCACTCGGTGGCGTTCAC
GTGGCCAACGCCACCACCTTATTGATATGGCTCTGCGTTTCCATCACAAG
AATTTAGCTCATTTGGCCCTGAGTACGTTGTTTGTCAATCGTCGGCGAAA
ACAATATATGCAATTAGAGGGGGCGAGGGCAGATGCCTTTCATGTTCGGC
GACTTGTTGCATGGTGGGAGCCCTCGGCCAAGGAAAGAAGGAAGCAGCAG
CATCAGCAAAAACAACAGCAGCGGCAAAAGCAGCAGCAGCAGGAACAGCA
GCGTGATTTTCCTGTGTCTTTACCCGATGTTGACATCATGTTGCACTCCA
ACTCCTCTGATAGTACCTCATCATGGCTGTCCTCGCCCTTCTCCTTGTCG
TCCATGCCGGGGATGCGAATTGACATGGGCATTTGCGTCGAAGGCACTCT
CTCCGTCCCATCGTTTTCAGCACCCCGTGACAGCAAGGGAGTAGAAAACG
AAGACCATCCCCACCCCGACGAATCCTCTTTCTTTCTCCCTCCCCTACCC
GAGATACGCCTACTCCAACACCGCGTCTTGGCCGCCTTGGGCACTAACCT
CAACCGCCACATGCACTCCTTGCCTGGGCCCGTCGTCGCGCCACCACCGC
ACTATGGCGACTCAGCCTATGCGCACGACAACATAACGTCCATCAAAGAG
CCATCGAAATCATGCTTCAATCGCAACGTCTTCACGCAGTCACTCGCGCC
ATGTCCCTCCTTTACGCTTCAGCCCGAAAGGTGCTCCTTCACTTGCGTGT
TTTCACAATTGTTCATCGAAAAGAGAGCTGCCGACGGGCCCTGCGACGAT
GGCAACGCAGAGCAGCCGCGGCAGCAGTCGGGCGCGTACGGCAGCAGAAG
GCGGTAA
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Synonyms
Publications