NO16G00070, NO16G00070 (gene) Nannochloropsis oceanica

Overview
NameNO16G00070
Unique NameNO16G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2693
Alignment locationchr16:24139..26831 +

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Properties
Property NameValue
DescriptionCalcium-dependent ARF-type GTPase activating protein family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:24139..26831 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005096GTPase activator activity
Vocabulary: INTERPRO
TermDefinition
IPR037278ARFGAP/RecO
IPR001164ArfGAP
Homology
BLAST of NO16G00070 vs. NCBI_GenBank
Match: XP_014529884.1 (hypothetical protein JH06_0218 [Blastocystis sp. subtype 4] >KNB46441.1 hypothetical protein JH06_0218 [Blastocystis sp. subtype 4])

HSP 1 Score: 169.9 bits (429), Expect = 1.700e-38
Identity = 74/126 (58.73%), Postives = 103/126 (81.75%), Query Frame = 0
Query:   14 VQADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSV 140
            ++A +KK LE LLK+  N+VCADC  +GPRWASAT+G FICI+CSG+HRNLGVHISFVRSV+LD WK EH++ M+RWGN R  AY+EA++P++Y RP + S++ ++ K+IR KYE +R++  DG++
Sbjct:    4 IKASHKKILEELLKKDCNKVCADCGAKGPRWASATLGCFICIRCSGVHRNLGVHISFVRSVSLDSWKNEHIKNMQRWGNKRCNAYWEAKLPANYPRPDEHSSMAELEKFIRAKYEQRRWV-ADGNI 128          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: XP_009832940.1 (hypothetical protein H257_08657 [Aphanomyces astaci] >ETV77830.1 hypothetical protein H257_08657 [Aphanomyces astaci])

HSP 1 Score: 167.5 bits (423), Expect = 8.200e-38
Identity = 77/140 (55.00%), Postives = 97/140 (69.29%), Query Frame = 0
Query:    9 AGTTTVQADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSVPARQLVASS 149
            AG    Q   KK L+ L+K+ DN+ CADC  RGPRWAS  +G FICI CSGIHR+LGVH++FVRSVNLD W  + V QM++WGN +A+ YFEA VP  Y  P++ S V+    WIRDKYE KRF+ RDG  P+ +   S+
Sbjct:    6 AGKPDDQVKLKKILDELMKRDDNRFCADCGARGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTGDQVAQMQKWGNAKAKDYFEALVPKDYRIPTEHSPVRDKEIWIRDKYERKRFIARDGDDPSAKRTNST 145          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: XP_009832941.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV77831.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 167.5 bits (423), Expect = 8.200e-38
Identity = 77/140 (55.00%), Postives = 97/140 (69.29%), Query Frame = 0
Query:    9 AGTTTVQADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSVPARQLVASS 149
            AG    Q   KK L+ L+K+ DN+ CADC  RGPRWAS  +G FICI CSGIHR+LGVH++FVRSVNLD W  + V QM++WGN +A+ YFEA VP  Y  P++ S V+    WIRDKYE KRF+ RDG  P+ +   S+
Sbjct:    6 AGKPDDQVKLKKILDELMKRDDNRFCADCGARGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTGDQVAQMQKWGNAKAKDYFEALVPKDYRIPTEHSPVRDKEIWIRDKYERKRFIARDGDDPSAKRTNST 145          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: XP_014529852.1 (putative ADP-ribosylation factor GTPase-activating protein [Blastocystis sp. subtype 4] >KNB46409.1 putative ADP-ribosylation factor GTPase-activating protein [Blastocystis sp. subtype 4])

HSP 1 Score: 167.2 bits (422), Expect = 1.100e-37
Identity = 71/124 (57.26%), Postives = 99/124 (79.84%), Query Frame = 0
Query:   14 VQADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDG 138
            ++A +KK LE LLK+  N+VCADC  +GPRWASAT+G FICI+CSG+HRNLGVHISFVRSV+LD WK EH++ M++WGN +  AY+EA +P +Y RP + S++ ++ ++IR KYE +R++  DG
Sbjct:    4 IKASHKKILEELLKKDCNKVCADCGAKGPRWASATLGCFICIRCSGVHRNLGVHISFVRSVSLDSWKDEHIKNMQKWGNKKCNAYWEARLPKNYPRPDEHSSMAELERFIRAKYEQRRWVADDG 127          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: OAO12336.1 (ADP-ribosylation factor GTPase-activating protein AGD5 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 166.0 bits (419), Expect = 2.400e-37
Identity = 70/123 (56.91%), Postives = 100/123 (81.30%), Query Frame = 0
Query:   14 VQADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRD 137
            ++A +KK LE+LLK+  N+VCADC  +GPRWASAT+G FICI+CSG+HRNLGVHISFVRSV+LD WK EH++ M++WGN +  AY+EA++P +Y RP + S++ ++ ++IR KYE +R++  D
Sbjct:    4 IKASHKKILEDLLKKDCNKVCADCRAKGPRWASATLGCFICIRCSGVHRNLGVHISFVRSVSLDSWKNEHIKNMQKWGNKKCNAYWEAKLPKNYPRPDEHSSMAELERFIRAKYEQRRWVADD 126          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: CCI42477.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 165.6 bits (418), Expect = 3.100e-37
Identity = 72/129 (55.81%), Postives = 95/129 (73.64%), Query Frame = 0
Query:   15 QADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSVPARQ 144
            Q   KK L+ L+K+ DN+ CADC  RGPRWAS  +G FICI CSGIHR+LGVH++FVRSVNLD W ++ V+QM++WGN RA+ Y+EA VP     P++ SNV+    WIRDKYE +RF+ R+G   +R+
Sbjct:   14 QTKLKKILDELIKREDNKFCADCGARGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTSDQVKQMQKWGNARAKEYYEANVPRDLRPPTEHSNVRDKEMWIRDKYERRRFVAREGDGSSRE 142          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: XP_012894833.1 (uncharacterized protein [Blastocystis hominis] >CBK20785.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 165.2 bits (417), Expect = 4.100e-37
Identity = 69/125 (55.20%), Postives = 100/125 (80.00%), Query Frame = 0
Query:   14 VQADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGS 139
            ++A +KK LE LLK+  N+VC DC  +GPRWASAT+G+FICI+CSG+HRNLGVHISFVRSV+LD WK EH++ M++WGN +  A++EA++P +Y RP + S++ ++ ++IR KYE +R++  D S
Sbjct:    4 IKASHKKILEELLKKDCNKVCCDCRAKGPRWASATLGSFICIRCSGVHRNLGVHISFVRSVSLDSWKNEHIKNMQKWGNKKVNAFYEAKLPKNYPRPDEHSSMAELERFIRAKYEQRRWVADDKS 128          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: XP_008874339.1 (hypothetical protein H310_09910 [Aphanomyces invadans] >ETV97093.1 hypothetical protein H310_09910 [Aphanomyces invadans])

HSP 1 Score: 165.2 bits (417), Expect = 4.100e-37
Identity = 75/126 (59.52%), Postives = 91/126 (72.22%), Query Frame = 0
Query:   15 QADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSVP 141
            Q   KK L+ L+K+ +N+ CADC  RGPRWAS  +G FICI CSGIHR+LGVH++FVRSVNLD W TE V QM+RWGN +A+ YFEA VP  Y  P++ S V+    WIRDKYE KRF+ RD   P
Sbjct:   12 QVKLKKILDELMKREENRFCADCGARGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDAWTTEQVTQMQRWGNAKAKEYFEALVPKDYRIPTEHSPVRDKEIWIRDKYERKRFVSRDAEDP 137          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: CBN76789.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 164.9 bits (416), Expect = 5.300e-37
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0
Query:   19 KKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSVPARQ 144
            +KRLE L+K  +N+ CADC +R PRWAS  +G FIC+ CSGIHRNLGVHISFVRSVNLD WK   V+ ME  GN RA+A+FEAEVP+SY  P + + V++  KWIRDKYE++RF+ R+   PARQ
Sbjct:    7 RKRLEALVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQ-PARQ 130          
BLAST of NO16G00070 vs. NCBI_GenBank
Match: XP_002998427.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69780.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 162.9 bits (411), Expect = 2.000e-36
Identity = 72/118 (61.02%), Postives = 90/118 (76.27%), Query Frame = 0
Query:   15 QADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRF 133
            Q   KK+L  L+K  +N+ CADC  RGPRWAS  +G FICI CSGIHR+LGVH++FVRSVNLD W ++ V+QM+RWGNGRA+AY+EA VP  Y  P++ S+V+    WIRDKYE KRF
Sbjct:   13 QTKLKKQLNELMKLEENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTSDQVQQMQRWGNGRAKAYYEANVPRDYRIPTEHSSVRDKEMWIRDKYERKRF 130          
The following BLAST results are available for this feature:
BLAST of NO16G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_014529884.11.700e-3858.73hypothetical protein JH06_0218 [Blastocystis sp. s... [more]
XP_009832940.18.200e-3855.00hypothetical protein H257_08657 [Aphanomyces astac... [more]
XP_009832941.18.200e-3855.00hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_014529852.11.100e-3757.26putative ADP-ribosylation factor GTPase-activating... [more]
OAO12336.12.400e-3756.91ADP-ribosylation factor GTPase-activating protein ... [more]
CCI42477.13.100e-3755.81unnamed protein product [Albugo candida][more]
XP_012894833.14.100e-3755.20uncharacterized protein [Blastocystis hominis] >CB... [more]
XP_008874339.14.100e-3759.52hypothetical protein H310_09910 [Aphanomyces invad... [more]
CBN76789.15.300e-3761.60conserved unknown protein [Ectocarpus siliculosus][more]
XP_002998427.12.000e-3661.02conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR089ncniR089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR058ngnoR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00070.1NO16G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G00070.2NO16G00070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|561119gene_10935Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100491g2gene7622Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00070.1NO16G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G00070.2NO16G00070.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00070 ID=NO16G00070|Name=NO16G00070|organism=Nannochloropsis oceanica|type=gene|length=2693bp
ACTTATTCCTGTCGTTGCCCTTCTTAGTTATCGAGTAGAATTTAATGAGG
ATTGGTCAAAGATGCCTGTCTTATGTGTTGCTTTGCTTTGGGAATCCTGT
TATCCCTGCTCCTAACGCCGTTGCAGATCGTCATCGCCAGCGAAGTCCTT
CAAGCCTCTGCCTACAGCCACTACGACCCGCACACAGCCACCTACAGGAC
ACATACGCCATCCACATGGCTGTATCTTGAGCAAATGCTATAGTTGTCGT
CGTCGAAGCATCTATTGCACCTCCTCTAGATCAATCACACCCCAGCCCTC
ACCTTTCGCTTCTTCTCAACCGACACAGGCTTGCCCTTCTCCTCCCCTCC
GTCCTAACCCATCCTAATGGCGTCCCGCCGCTCGCCGCTGGCGGGAACAA
CGACGGTGCAGGCTGACAATAAAAAAAGATTGGAGAATCTTTTGAAGCAG
CCGGACAACCAGGTCTGCGCTGACTGCCCAGAACGAGGTACGTTTCGATA
GGTTTACACTCCCCCTCTCGCCTTCTCTTCCATTCCCCCCCCCCACGGCT
ATACACGGACGGTACATCGCGTAACGAGAAGGGCGCTCGAGGAAACATGC
TGACGAGTTGGAACAGACGAGACGCGTAGAGCTGGTTGGTCTAATGTGGA
GGAAGACCCACAGAGGGCTCTGCACCTCTCGACCCGCTCTCTTCCATACC
CCGCACCACCCGTTGACATACAAGCCATCTAGGAACGGTGCTTGTCAATC
ATTCCCTTATTCATCCCCTTTCTCACAGTAATCGTATGTACTGTCGTTCA
ACCCCTCCCTCTCTTCCTCTCTGGCTCTCTTCACACACAGGGCCCCGCTG
GGCCTCGGCCACGATGGGCACCTTTATCTGCATTAAGTGCAGTGGCATCC
ACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCTGTTAACCTGGAT
GAATGGAAGACGGAGCACGTCGAGgtgagggagggagggagggagagagg
aggagggctgtagttggactggcacctgtgtcattcagcagcctgggaaa
gtacgtgctctgtctcttccaccctactcaccgctcttcgaaaacaatta
aaaccaacagCAAATGGAACGCTGGGGTAACGGTCGCGCGCGAGCCTATT
TCGAGGCGGAGGTACCCTCGTCCTATGCCCGCCCCTCAGACTGGTCTAAT
GTGCAGCAGATGACCAAGTGGATACGGgtgagcacagggatagaaggagg
gaggggggggggaaggggggcagagagtgaaagaccagccaatttgtctg
gtgtactatcatagatgtgtgtactctctcgtggtctcacatccctcccc
tccctcccttccttcttccctccctccctccctccctccctccctccctc
cctcctcccacagGACAAGTACGAATACAAACGTTTCCTGCCCCGCGACG
GCTCGGTGCCAGCGCGTCAGTTGGTGGCGTCGTCACGgtacgtctcgcgg
ggaggaatgagggaaggaggaagggaaggagggagggagggagggacagc
cacagctgaacctagttatgccaccccacgtcccctccgcgtctcacgtc
ttcctccctccctccctccctccctccctccctctcctttcctgtcttta
cccttcgcaatatgcacctggcagCAATCACGAGCCCTCCTCCTCAACCT
CCTCCTCGACCTCCTCTTCCTCGCGGGAGCGCAAGCCCCGGGACCgtccc
tcccccgcccctccccttccctcccccccccctcctcctcctcctcctcc
accaccaccaccgcaccttctttggtgaaggccaaagcggctcccacgcc
agTCGCCGACCTCTTGGACTTCACAGCACCCGAGCCCACCCCTCCCCCTG
CCTCCATCCCTGCCTCCTTCCCTGCTTCCTCCTTCCAGATGGAAGCGCCT
GTCGCGACGGCGGCCGGCCCACCTCCCTCCCTCCCTCCTTCCCTCCCTGT
GGTGGAGATGACGAGCAGCGGTAAGCCCAAGCTCTCCACGGACCAGCTTT
TATCCATGTTCATGAACCCTGCAGCTCCCCCACAGCCGCAGCAGCAGCAG
CCAGgtgagagggaggggggagggaaggacggagggagagaggctgcttg
catgtcctatttccctcgaaacaatcattcattctctctccttcccgtcc
ctttttcttttcattcctgtctctctttccttccttgctttttccccttc
cagGCATGTATGGGGGTCAGGGCTTCGCGCAACCCGGCTACCCCAACCAC
CACTATCAACAGCACCGGCAGCATCAGCAACCGCATTATCAGCAGTATCA
GCAGCACCAGCAGCACCAGCAGTACGACAAACATCTTTCTCATCATCAGC
ACCAGCGCCAGCAGCAGCAGAATCCGTTCGAACCCCCTTCGTCTGGCGGA
CTAGGGATGATGGGAGGGATGGGGGGAGGAATGGCCGTTTCCCAGCAGCA
GCAGCAGCAGCAGCAGCGACAGACGCATCAGGATGGATTCGGGTTAGGGG
TGACTTCCATGATGCCTCCTCCCTCCCTCCACCCATCCCTGCCTGCTACC
TACCCTCCGCAGCAGCAGCCGCAGCAGCCCGTGTGGTCGCCGCAATCGCA
GCAAGGGGGAGGGGGAGGAGGGATGAATGGGTTTCCTTTCTAG
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protein sequence of NO16G00070.1

>NO16G00070.1-protein ID=NO16G00070.1-protein|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MYCRSTPPSLPLWLSSHTGPRWASATMGTFICIKCSGIHRNLGVHISFVR
SVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKW
IRDKYEYKRFLPRDGSVPARQLVASSRNHEPSSSTSSSTSSSSRERKPRD
LADLLDFTAPEPTPPPASIPASFPASSFQMEAPVATAAGPPPSLPPSLPV
VEMTSSGKPKLSTDQLLSMFMNPAAPPQPQQQQPGMYGGQGFAQPGYPNH
HYQQHRQHQQPHYQQYQQHQQHQQYDKHLSHHQHQRQQQQNPFEPPSSGG
LGMMGGMGGGMAVSQQQQQQQQRQTHQDGFGLGVTSMMPPPSLHPSLPAT
YPPQQQPQQPVWSPQSQQGGGGGGMNGFPF*
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protein sequence of NO16G00070.2

>NO16G00070.2-protein ID=NO16G00070.2-protein|Name=NO16G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MASRRSPLAGTTTVQADNKKRLENLLKQPDNQVCADCPERGPRWASATMG
TFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFE
AEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSVPARQLVASSRN
HEPSSSTSSSTSSSSRERKPRDLADLLDFTAPEPTPPPASIPASFPASSF
QMEAPVATAAGPPPSLPPSLPVVEMTSSGKPKLSTDQLLSMFMNPAAPPQ
PQQQQPGMYGGQGFAQPGYPNHHYQQHRQHQQPHYQQYQQHQQHQQYDKH
LSHHQHQRQQQQNPFEPPSSGGLGMMGGMGGGMAVSQQQQQQQQRQTHQD
GFGLGVTSMMPPPSLHPSLPATYPPQQQPQQPVWSPQSQQGGGGGGMNGF
PF*
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Synonyms
Publications