NO16G00070.1, NO16G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00070.1
Unique NameNO16G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1928
Alignment locationchr16:24139..26831 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:24139..26831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00070.1 vs.
Match: KUF86206.1 (Stromal membrane-associated protein 2 [Phytophthora nicotianae])

HSP 1 Score: 139.0 bits (349), Expect = 3.000e-29
Identity = 104/253 (41.11%), Postives = 131/253 (51.78%), Query Frame = 0 
Query:   19 GPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFL---PR---DGSVPARQLVASSRNHEP--------SSSTSSSTSSSSRERKPRDLA---DLLDFTAPEPTPPPASIPASFPASSFQMEAPVATAAGPPPSLPPSLPVVEMTSSG-------KPKLSTDQLLSMFMNPAA----PPQPQQQQPGMYGGQGFA 244
            GPRWAS  +G FICI CSGIHR+LGVH++FVRSVNLD W T+ V+QM+RWGN RA+ Y+EA VP  Y  P++ S+V+    WIRDKYE KRF+   PR   D     ++  +S    EP         +S+   + +SSRE  P   A   D+L F         A +P S PA+S    APV  AA P      S        SG       +P    DQ ++   N  A      QPQQQQ      QG A
Sbjct:   39 GPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTTDQVQQMQRWGNARAKGYYEANVPRDYRIPTEHSSVRDKEMWIRDKYERKRFVGEAPRENEDRGARRKKHSSSEEEEEPRQRRKDKERTSSRHGSRTSSREATPTQPAVTQDILSFDVFS-----APVPESKPAASLVDAAPV--AAAPKQDEWASFGGSSNAQSGFKDAFAPQPPAPADQHVNKMANIMASFGSSTQPQQQQNAFPPQQGMA 284
The following BLAST results are available for this feature:
BLAST of NO16G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KUF86206.13.000e-2941.11Stromal membrane-associated protein 2 [Phytophthor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00070NO16G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00070.1NO16G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00070.1.cds1NO16G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.1.cds2NO16G00070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.1.cds3NO16G00070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.1.cds4NO16G00070.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.1.cds5NO16G00070.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.1.cds6NO16G00070.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00070.1 ID=NO16G00070.1|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp
ACTTATTCCTGTCGTTGCCCTTCTTAGTTATCGAGTAGAATTTAATGAGG
ATTGGTCAAAGATGCCTGTCTTATGTGTTGCTTTGCTTTGGGAATCCTGT
TATCCCTGCTCCTAACGCCGTTGCAGATCGTCATCGCCAGCGAAGTCCTT
CAAGCCTCTGCCTACAGCCACTACGACCCGCACACAGCCACCTACAGGAC
ACATACGCCATCCACATGGCTGTATCTTGAGCAAATGCTATAGTTGTCGT
CGTCGAAGCATCTATTGCACCTCCTCTAGATCAATCACACCCCAGCCCTC
ACCTTTCGCTTCTTCTCAACCGACACAGGCTTGCCCTTCTCCTCCCCTCC
GTCCTAACCCATCCTAATGGCGTCCCGCCGCTCGCCGCTGGCGGGAACAA
CGACGGTGCAGGCTGACAATAAAAAAAGATTGGAGAATCTTTTGAAGCAG
CCGGACAACCAGGTCTGCGCTGACTGCCCAGAACGAGGTACGTTTCGATA
GGTTTACACTCCCCCTCTCGCCTTCTCTTCCATTCCCCCCCCCCACGGCT
ATACACGGACGGTACATCGCGTAACGAGAAGGGCGCTCGAGGAAACATGC
TGACGAGTTGGAACAGACGAGACGCGTAGAGCTGGTTGGTCTAATGTGGA
GGAAGACCCACAGAGGGCTCTGCACCTCTCGACCCGCTCTCTTCCATACC
CCGCACCACCCGTTGACATACAAGCCATCTAGGAACGGTGCTTGTCAATC
ATTCCCTTATTCATCCCCTTTCTCACAGTAATCGTATGTACTGTCGTTCA
ACCCCTCCCTCTCTTCCTCTCTGGCTCTCTTCACACACAGGGCCCCGCTG
GGCCTCGGCCACGATGGGCACCTTTATCTGCATTAAGTGCAGTGGCATCC
ACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCTGTTAACCTGGAT
GAATGGAAGACGGAGCACGTCGAGCAAATGGAACGCTGGGGTAACGGTCG
CGCGCGAGCCTATTTCGAGGCGGAGGTACCCTCGTCCTATGCCCGCCCCT
CAGACTGGTCTAATGTGCAGCAGATGACCAAGTGGATACGGGACAAGTAC
GAATACAAACGTTTCCTGCCCCGCGACGGCTCGGTGCCAGCGCGTCAGTT
GGTGGCGTCGTCACGCAATCACGAGCCCTCCTCCTCAACCTCCTCCTCGA
CCTCCTCTTCCTCGCGGGAGCGCAAGCCCCGGGACCTCGCCGACCTCTTG
GACTTCACAGCACCCGAGCCCACCCCTCCCCCTGCCTCCATCCCTGCCTC
CTTCCCTGCTTCCTCCTTCCAGATGGAAGCGCCTGTCGCGACGGCGGCCG
GCCCACCTCCCTCCCTCCCTCCTTCCCTCCCTGTGGTGGAGATGACGAGC
AGCGGTAAGCCCAAGCTCTCCACGGACCAGCTTTTATCCATGTTCATGAA
CCCTGCAGCTCCCCCACAGCCGCAGCAGCAGCAGCCAGGCATGTATGGGG
GTCAGGGCTTCGCGCAACCCGGCTACCCCAACCACCACTATCAACAGCAC
CGGCAGCATCAGCAACCGCATTATCAGCAGTATCAGCAGCACCAGCAGCA
CCAGCAGTACGACAAACATCTTTCTCATCATCAGCACCAGCGCCAGCAGC
AGCAGAATCCGTTCGAACCCCCTTCGTCTGGCGGACTAGGGATGATGGGA
GGGATGGGGGGAGGAATGGCCGTTTCCCAGCAGCAGCAGCAGCAGCAGCA
GCGACAGACGCATCAGGATGGATTCGGGTTAGGGGTGACTTCCATGATGC
CTCCTCCCTCCCTCCACCCATCCCTGCCTGCTACCTACCCTCCGCAGCAG
CAGCCGCAGCAGCCCGTGTGGTCGCCGCAATCGCAGCAAGGGGGAGGGGG
AGGAGGGATGAATGGGTTTCCTTTCTAG
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protein sequence of NO16G00070.1

>NO16G00070.1-protein ID=NO16G00070.1-protein|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MYCRSTPPSLPLWLSSHTGPRWASATMGTFICIKCSGIHRNLGVHISFVR
SVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKW
IRDKYEYKRFLPRDGSVPARQLVASSRNHEPSSSTSSSTSSSSRERKPRD
LADLLDFTAPEPTPPPASIPASFPASSFQMEAPVATAAGPPPSLPPSLPV
VEMTSSGKPKLSTDQLLSMFMNPAAPPQPQQQQPGMYGGQGFAQPGYPNH
HYQQHRQHQQPHYQQYQQHQQHQQYDKHLSHHQHQRQQQQNPFEPPSSGG
LGMMGGMGGGMAVSQQQQQQQQRQTHQDGFGLGVTSMMPPPSLHPSLPAT
YPPQQQPQQPVWSPQSQQGGGGGGMNGFPF*
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mRNA from alignment at chr16:24139..26831+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00070.1 ID=NO16G00070.1|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2693bp|location=Sequence derived from alignment at chr16:24139..26831+ (Nannochloropsis oceanica)
ACTTATTCCTGTCGTTGCCCTTCTTAGTTATCGAGTAGAATTTAATGAGG
ATTGGTCAAAGATGCCTGTCTTATGTGTTGCTTTGCTTTGGGAATCCTGT
TATCCCTGCTCCTAACGCCGTTGCAGATCGTCATCGCCAGCGAAGTCCTT
CAAGCCTCTGCCTACAGCCACTACGACCCGCACACAGCCACCTACAGGAC
ACATACGCCATCCACATGGCTGTATCTTGAGCAAATGCTATAGTTGTCGT
CGTCGAAGCATCTATTGCACCTCCTCTAGATCAATCACACCCCAGCCCTC
ACCTTTCGCTTCTTCTCAACCGACACAGGCTTGCCCTTCTCCTCCCCTCC
GTCCTAACCCATCCTAATGGCGTCCCGCCGCTCGCCGCTGGCGGGAACAA
CGACGGTGCAGGCTGACAATAAAAAAAGATTGGAGAATCTTTTGAAGCAG
CCGGACAACCAGGTCTGCGCTGACTGCCCAGAACGAGGTACGTTTCGATA
GGTTTACACTCCCCCTCTCGCCTTCTCTTCCATTCCCCCCCCCCACGGCT
ATACACGGACGGTACATCGCGTAACGAGAAGGGCGCTCGAGGAAACATGC
TGACGAGTTGGAACAGACGAGACGCGTAGAGCTGGTTGGTCTAATGTGGA
GGAAGACCCACAGAGGGCTCTGCACCTCTCGACCCGCTCTCTTCCATACC
CCGCACCACCCGTTGACATACAAGCCATCTAGGAACGGTGCTTGTCAATC
ATTCCCTTATTCATCCCCTTTCTCACAGTAATCGTATGTACTGTCGTTCA
ACCCCTCCCTCTCTTCCTCTCTGGCTCTCTTCACACACAGGGCCCCGCTG
GGCCTCGGCCACGATGGGCACCTTTATCTGCATTAAGTGCAGTGGCATCC
ACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCTGTTAACCTGGAT
GAATGGAAGACGGAGCACGTCGAGGTGAGGGAGGGAGGGAGGGAGAGAGG
AGGAGGGCTGTAGTTGGACTGGCACCTGTGTCATTCAGCAGCCTGGGAAA
GTACGTGCTCTGTCTCTTCCACCCTACTCACCGCTCTTCGAAAACAATTA
AAACCAACAGCAAATGGAACGCTGGGGTAACGGTCGCGCGCGAGCCTATT
TCGAGGCGGAGGTACCCTCGTCCTATGCCCGCCCCTCAGACTGGTCTAAT
GTGCAGCAGATGACCAAGTGGATACGGGTGAGCACAGGGATAGAAGGAGG
GAGGGGGGGGGGAAGGGGGGCAGAGAGTGAAAGACCAGCCAATTTGTCTG
GTGTACTATCATAGATGTGTGTACTCTCTCGTGGTCTCACATCCCTCCCC
TCCCTCCCTTCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTCCCACAGGACAAGTACGAATACAAACGTTTCCTGCCCCGCGACG
GCTCGGTGCCAGCGCGTCAGTTGGTGGCGTCGTCACGGTACGTCTCGCGG
GGAGGAATGAGGGAAGGAGGAAGGGAAGGAGGGAGGGAGGGAGGGACAGC
CACAGCTGAACCTAGTTATGCCACCCCACGTCCCCTCCGCGTCTCACGTC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCTTTCCTGTCTTTA
CCCTTCGCAATATGCACCTGGCAGCAATCACGAGCCCTCCTCCTCAACCT
CCTCCTCGACCTCCTCTTCCTCGCGGGAGCGCAAGCCCCGGGACCGTCCC
TCCCCCGCCCCTCCCCTTCCCTCCCCCCCCCCTCCTCCTCCTCCTCCTCC
ACCACCACCACCGCACCTTCTTTGGTGAAGGCCAAAGCGGCTCCCACGCC
AGTCGCCGACCTCTTGGACTTCACAGCACCCGAGCCCACCCCTCCCCCTG
CCTCCATCCCTGCCTCCTTCCCTGCTTCCTCCTTCCAGATGGAAGCGCCT
GTCGCGACGGCGGCCGGCCCACCTCCCTCCCTCCCTCCTTCCCTCCCTGT
GGTGGAGATGACGAGCAGCGGTAAGCCCAAGCTCTCCACGGACCAGCTTT
TATCCATGTTCATGAACCCTGCAGCTCCCCCACAGCCGCAGCAGCAGCAG
CCAGGTGAGAGGGAGGGGGGAGGGAAGGACGGAGGGAGAGAGGCTGCTTG
CATGTCCTATTTCCCTCGAAACAATCATTCATTCTCTCTCCTTCCCGTCC
CTTTTTCTTTTCATTCCTGTCTCTCTTTCCTTCCTTGCTTTTTCCCCTTC
CAGGCATGTATGGGGGTCAGGGCTTCGCGCAACCCGGCTACCCCAACCAC
CACTATCAACAGCACCGGCAGCATCAGCAACCGCATTATCAGCAGTATCA
GCAGCACCAGCAGCACCAGCAGTACGACAAACATCTTTCTCATCATCAGC
ACCAGCGCCAGCAGCAGCAGAATCCGTTCGAACCCCCTTCGTCTGGCGGA
CTAGGGATGATGGGAGGGATGGGGGGAGGAATGGCCGTTTCCCAGCAGCA
GCAGCAGCAGCAGCAGCGACAGACGCATCAGGATGGATTCGGGTTAGGGG
TGACTTCCATGATGCCTCCTCCCTCCCTCCACCCATCCCTGCCTGCTACC
TACCCTCCGCAGCAGCAGCCGCAGCAGCCCGTGTGGTCGCCGCAATCGCA
GCAAGGGGGAGGGGGAGGAGGGATGAATGGGTTTCCTTTCTAG
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Coding sequence (CDS) from alignment at chr16:24139..26831+

>NO16G00070.1 ID=NO16G00070.1|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr16:24139..26831+ (Nannochloropsis oceanica)
ATGTACTGTCGTTCAACCCCTCCCTCTCTTCCTCTCTGGCTCTCTTCACA
CACAGGGCCCCGCTGGGCCTCGGCCACGATGGGCACCTTTATCTGCATTA
AGTGCAGTGGCATCCACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGC
TCTGTTAACCTGGATGAATGGAAGACGGAGCACGTCGAGCAAATGGAACG
CTGGGGTAACGGTCGCGCGCGAGCCTATTTCGAGGCGGAGGTACCCTCGT
CCTATGCCCGCCCCTCAGACTGGTCTAATGTGCAGCAGATGACCAAGTGG
ATACGGGACAAGTACGAATACAAACGTTTCCTGCCCCGCGACGGCTCGGT
GCCAGCGCGTCAGTTGGTGGCGTCGTCACGCAATCACGAGCCCTCCTCCT
CAACCTCCTCCTCGACCTCCTCTTCCTCGCGGGAGCGCAAGCCCCGGGAC
CTCGCCGACCTCTTGGACTTCACAGCACCCGAGCCCACCCCTCCCCCTGC
CTCCATCCCTGCCTCCTTCCCTGCTTCCTCCTTCCAGATGGAAGCGCCTG
TCGCGACGGCGGCCGGCCCACCTCCCTCCCTCCCTCCTTCCCTCCCTGTG
GTGGAGATGACGAGCAGCGGTAAGCCCAAGCTCTCCACGGACCAGCTTTT
ATCCATGTTCATGAACCCTGCAGCTCCCCCACAGCCGCAGCAGCAGCAGC
CAGGCATGTATGGGGGTCAGGGCTTCGCGCAACCCGGCTACCCCAACCAC
CACTATCAACAGCACCGGCAGCATCAGCAACCGCATTATCAGCAGTATCA
GCAGCACCAGCAGCACCAGCAGTACGACAAACATCTTTCTCATCATCAGC
ACCAGCGCCAGCAGCAGCAGAATCCGTTCGAACCCCCTTCGTCTGGCGGA
CTAGGGATGATGGGAGGGATGGGGGGAGGAATGGCCGTTTCCCAGCAGCA
GCAGCAGCAGCAGCAGCGACAGACGCATCAGGATGGATTCGGGTTAGGGG
TGACTTCCATGATGCCTCCTCCCTCCCTCCACCCATCCCTGCCTGCTACC
TACCCTCCGCAGCAGCAGCCGCAGCAGCCCGTGTGGTCGCCGCAATCGCA
GCAAGGGGGAGGGGGAGGAGGGATGAATGGGTTTCCTTTCTAG
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Synonyms
Publications