Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr16 genome chr16:24139..26831 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G00070.1 vs.
Match: KUF86206.1 (Stromal membrane-associated protein 2 [Phytophthora nicotianae])
HSP 1 Score: 139.0 bits (349), Expect = 3.000e-29
Identity = 104/253 (41.11%), Postives = 131/253 (51.78%), Query Frame = 0
Query: 19 GPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFL---PR---DGSVPARQLVASSRNHEP--------SSSTSSSTSSSSRERKPRDLA---DLLDFTAPEPTPPPASIPASFPASSFQMEAPVATAAGPPPSLPPSLPVVEMTSSG-------KPKLSTDQLLSMFMNPAA----PPQPQQQQPGMYGGQGFA 244
GPRWAS +G FICI CSGIHR+LGVH++FVRSVNLD W T+ V+QM+RWGN RA+ Y+EA VP Y P++ S+V+ WIRDKYE KRF+ PR D ++ +S EP +S+ + +SSRE P A D+L F A +P S PA+S APV AA P S SG +P DQ ++ N A QPQQQQ QG A
Sbjct: 39 GPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTTDQVQQMQRWGNARAKGYYEANVPRDYRIPTEHSSVRDKEMWIRDKYERKRFVGEAPRENEDRGARRKKHSSSEEEEEPRQRRKDKERTSSRHGSRTSSREATPTQPAVTQDILSFDVFS-----APVPESKPAASLVDAAPV--AAAPKQDEWASFGGSSNAQSGFKDAFAPQPPAPADQHVNKMANIMASFGSSTQPQQQQNAFPPQQGMA 284
The following BLAST results are available for this feature:
BLAST of NO16G00070.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 Expect = 3.00e-29 / Id = 41.11 Sequence KUF86206.1
Match Name E-value Identity Description
KUF86206.1 3.000e-29 41.11 Stromal membrane-associated protein 2 [Phytophthor... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO16G00070.1 ID=NO16G00070.1|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp ACTTATTCCTGTCGTTGCCCTTCTTAGTTATCGAGTAGAATTTAATGAGG ATTGGTCAAAGATGCCTGTCTTATGTGTTGCTTTGCTTTGGGAATCCTGT TATCCCTGCTCCTAACGCCGTTGCAGATCGTCATCGCCAGCGAAGTCCTT CAAGCCTCTGCCTACAGCCACTACGACCCGCACACAGCCACCTACAGGAC ACATACGCCATCCACATGGCTGTATCTTGAGCAAATGCTATAGTTGTCGT CGTCGAAGCATCTATTGCACCTCCTCTAGATCAATCACACCCCAGCCCTC ACCTTTCGCTTCTTCTCAACCGACACAGGCTTGCCCTTCTCCTCCCCTCC GTCCTAACCCATCCTAATGGCGTCCCGCCGCTCGCCGCTGGCGGGAACAA CGACGGTGCAGGCTGACAATAAAAAAAGATTGGAGAATCTTTTGAAGCAG CCGGACAACCAGGTCTGCGCTGACTGCCCAGAACGAGGTACGTTTCGATA GGTTTACACTCCCCCTCTCGCCTTCTCTTCCATTCCCCCCCCCCACGGCT ATACACGGACGGTACATCGCGTAACGAGAAGGGCGCTCGAGGAAACATGC TGACGAGTTGGAACAGACGAGACGCGTAGAGCTGGTTGGTCTAATGTGGA GGAAGACCCACAGAGGGCTCTGCACCTCTCGACCCGCTCTCTTCCATACC CCGCACCACCCGTTGACATACAAGCCATCTAGGAACGGTGCTTGTCAATC ATTCCCTTATTCATCCCCTTTCTCACAGTAATCGTATGTACTGTCGTTCA ACCCCTCCCTCTCTTCCTCTCTGGCTCTCTTCACACACAGGGCCCCGCTG GGCCTCGGCCACGATGGGCACCTTTATCTGCATTAAGTGCAGTGGCATCC ACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCTGTTAACCTGGAT GAATGGAAGACGGAGCACGTCGAGCAAATGGAACGCTGGGGTAACGGTCG CGCGCGAGCCTATTTCGAGGCGGAGGTACCCTCGTCCTATGCCCGCCCCT CAGACTGGTCTAATGTGCAGCAGATGACCAAGTGGATACGGGACAAGTAC GAATACAAACGTTTCCTGCCCCGCGACGGCTCGGTGCCAGCGCGTCAGTT GGTGGCGTCGTCACGCAATCACGAGCCCTCCTCCTCAACCTCCTCCTCGA CCTCCTCTTCCTCGCGGGAGCGCAAGCCCCGGGACCTCGCCGACCTCTTG GACTTCACAGCACCCGAGCCCACCCCTCCCCCTGCCTCCATCCCTGCCTC CTTCCCTGCTTCCTCCTTCCAGATGGAAGCGCCTGTCGCGACGGCGGCCG GCCCACCTCCCTCCCTCCCTCCTTCCCTCCCTGTGGTGGAGATGACGAGC AGCGGTAAGCCCAAGCTCTCCACGGACCAGCTTTTATCCATGTTCATGAA CCCTGCAGCTCCCCCACAGCCGCAGCAGCAGCAGCCAGGCATGTATGGGG GTCAGGGCTTCGCGCAACCCGGCTACCCCAACCACCACTATCAACAGCAC CGGCAGCATCAGCAACCGCATTATCAGCAGTATCAGCAGCACCAGCAGCA CCAGCAGTACGACAAACATCTTTCTCATCATCAGCACCAGCGCCAGCAGC AGCAGAATCCGTTCGAACCCCCTTCGTCTGGCGGACTAGGGATGATGGGA GGGATGGGGGGAGGAATGGCCGTTTCCCAGCAGCAGCAGCAGCAGCAGCA GCGACAGACGCATCAGGATGGATTCGGGTTAGGGGTGACTTCCATGATGC CTCCTCCCTCCCTCCACCCATCCCTGCCTGCTACCTACCCTCCGCAGCAG CAGCCGCAGCAGCCCGTGTGGTCGCCGCAATCGCAGCAAGGGGGAGGGGG AGGAGGGATGAATGGGTTTCCTTTCTAG back to top protein sequence of NO16G00070.1
>NO16G00070.1-protein ID=NO16G00070.1-protein|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp MYCRSTPPSLPLWLSSHTGPRWASATMGTFICIKCSGIHRNLGVHISFVR SVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKW IRDKYEYKRFLPRDGSVPARQLVASSRNHEPSSSTSSSTSSSSRERKPRD LADLLDFTAPEPTPPPASIPASFPASSFQMEAPVATAAGPPPSLPPSLPV VEMTSSGKPKLSTDQLLSMFMNPAAPPQPQQQQPGMYGGQGFAQPGYPNH HYQQHRQHQQPHYQQYQQHQQHQQYDKHLSHHQHQRQQQQNPFEPPSSGG LGMMGGMGGGMAVSQQQQQQQQRQTHQDGFGLGVTSMMPPPSLHPSLPAT YPPQQQPQQPVWSPQSQQGGGGGGMNGFPF* back to top mRNA from alignment at chr16:24139..26831+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00070.1 ID=NO16G00070.1|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2693bp|location=Sequence derived from alignment at chr16:24139..26831+ (Nannochloropsis oceanica) ACTTATTCCTGTCGTTGCCCTTCTTAGTTATCGAGTAGAATTTAATGAGG
ATTGGTCAAAGATGCCTGTCTTATGTGTTGCTTTGCTTTGGGAATCCTGT
TATCCCTGCTCCTAACGCCGTTGCAGATCGTCATCGCCAGCGAAGTCCTT
CAAGCCTCTGCCTACAGCCACTACGACCCGCACACAGCCACCTACAGGAC
ACATACGCCATCCACATGGCTGTATCTTGAGCAAATGCTATAGTTGTCGT
CGTCGAAGCATCTATTGCACCTCCTCTAGATCAATCACACCCCAGCCCTC
ACCTTTCGCTTCTTCTCAACCGACACAGGCTTGCCCTTCTCCTCCCCTCC
GTCCTAACCCATCCTAATGGCGTCCCGCCGCTCGCCGCTGGCGGGAACAA
CGACGGTGCAGGCTGACAATAAAAAAAGATTGGAGAATCTTTTGAAGCAG
CCGGACAACCAGGTCTGCGCTGACTGCCCAGAACGAGGTACGTTTCGATA
GGTTTACACTCCCCCTCTCGCCTTCTCTTCCATTCCCCCCCCCCACGGCT
ATACACGGACGGTACATCGCGTAACGAGAAGGGCGCTCGAGGAAACATGC
TGACGAGTTGGAACAGACGAGACGCGTAGAGCTGGTTGGTCTAATGTGGA
GGAAGACCCACAGAGGGCTCTGCACCTCTCGACCCGCTCTCTTCCATACC
CCGCACCACCCGTTGACATACAAGCCATCTAGGAACGGTGCTTGTCAATC
ATTCCCTTATTCATCCCCTTTCTCACAGTAATCGTATGTACTGTCGTTCA
ACCCCTCCCTCTCTTCCTCTCTGGCTCTCTTCACACACAGGGCCCCGCTG
GGCCTCGGCCACGATGGGCACCTTTATCTGCATTAAGTGCAGTGGCATCC
ACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCTGTTAACCTGGAT
GAATGGAAGACGGAGCACGTCGAG GTGAGGGAGGGAGGGAGGGAGAGAGG
AGGAGGGCTGTAGTTGGACTGGCACCTGTGTCATTCAGCAGCCTGGGAAA
GTACGTGCTCTGTCTCTTCCACCCTACTCACCGCTCTTCGAAAACAATTA
AAACCAACAGCAAATGGAACGCTGGGGTAACGGTCGCGCGCGAGCCTATT
TCGAGGCGGAGGTACCCTCGTCCTATGCCCGCCCCTCAGACTGGTCTAAT
GTGCAGCAGATGACCAAGTGGATACGG GTGAGCACAGGGATAGAAGGAGG
GAGGGGGGGGGGAAGGGGGGCAGAGAGTGAAAGACCAGCCAATTTGTCTG
GTGTACTATCATAGATGTGTGTACTCTCTCGTGGTCTCACATCCCTCCCC
TCCCTCCCTTCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTCCCACAGGACAAGTACGAATACAAACGTTTCCTGCCCCGCGACG
GCTCGGTGCCAGCGCGTCAGTTGGTGGCGTCGTCACG GTACGTCTCGCGG
GGAGGAATGAGGGAAGGAGGAAGGGAAGGAGGGAGGGAGGGAGGGACAGC
CACAGCTGAACCTAGTTATGCCACCCCACGTCCCCTCCGCGTCTCACGTC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCTTTCCTGTCTTTA
CCCTTCGCAATATGCACCTGGCAGCAATCACGAGCCCTCCTCCTCAACCT
CCTCCTCGACCTCCTCTTCCTCGCGGGAGCGCAAGCCCCGGGACC GTCCC
TCCCCCGCCCCTCCCCTTCCCTCCCCCCCCCCTCCTCCTCCTCCTCCTCC
ACCACCACCACCGCACCTTCTTTGGTGAAGGCCAAAGCGGCTCCCACGCC
AGTCGCCGACCTCTTGGACTTCACAGCACCCGAGCCCACCCCTCCCCCTG
CCTCCATCCCTGCCTCCTTCCCTGCTTCCTCCTTCCAGATGGAAGCGCCT
GTCGCGACGGCGGCCGGCCCACCTCCCTCCCTCCCTCCTTCCCTCCCTGT
GGTGGAGATGACGAGCAGCGGTAAGCCCAAGCTCTCCACGGACCAGCTTT
TATCCATGTTCATGAACCCTGCAGCTCCCCCACAGCCGCAGCAGCAGCAG
CCAG GTGAGAGGGAGGGGGGAGGGAAGGACGGAGGGAGAGAGGCTGCTTG
CATGTCCTATTTCCCTCGAAACAATCATTCATTCTCTCTCCTTCCCGTCC
CTTTTTCTTTTCATTCCTGTCTCTCTTTCCTTCCTTGCTTTTTCCCCTTC
CAGGCATGTATGGGGGTCAGGGCTTCGCGCAACCCGGCTACCCCAACCAC
CACTATCAACAGCACCGGCAGCATCAGCAACCGCATTATCAGCAGTATCA
GCAGCACCAGCAGCACCAGCAGTACGACAAACATCTTTCTCATCATCAGC
ACCAGCGCCAGCAGCAGCAGAATCCGTTCGAACCCCCTTCGTCTGGCGGA
CTAGGGATGATGGGAGGGATGGGGGGAGGAATGGCCGTTTCCCAGCAGCA
GCAGCAGCAGCAGCAGCGACAGACGCATCAGGATGGATTCGGGTTAGGGG
TGACTTCCATGATGCCTCCTCCCTCCCTCCACCCATCCCTGCCTGCTACC
TACCCTCCGCAGCAGCAGCCGCAGCAGCCCGTGTGGTCGCCGCAATCGCA
GCAAGGGGGAGGGGGAGGAGGGATGAATGGGTTTCCTTTCTAG back to top Coding sequence (CDS) from alignment at chr16:24139..26831+
>NO16G00070.1 ID=NO16G00070.1|Name=NO16G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr16:24139..26831+ (Nannochloropsis oceanica) ATGTACTGTCGTTCAACCCCTCCCTCTCTTCCTCTCTGGCTCTCTTCACA CACAGGGCCCCGCTGGGCCTCGGCCACGATGGGCACCTTTATCTGCATTA AGTGCAGTGGCATCCACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGC TCTGTTAACCTGGATGAATGGAAGACGGAGCACGTCGAGCAAATGGAACG CTGGGGTAACGGTCGCGCGCGAGCCTATTTCGAGGCGGAGGTACCCTCGT CCTATGCCCGCCCCTCAGACTGGTCTAATGTGCAGCAGATGACCAAGTGG ATACGGGACAAGTACGAATACAAACGTTTCCTGCCCCGCGACGGCTCGGT GCCAGCGCGTCAGTTGGTGGCGTCGTCACGCAATCACGAGCCCTCCTCCT CAACCTCCTCCTCGACCTCCTCTTCCTCGCGGGAGCGCAAGCCCCGGGAC CTCGCCGACCTCTTGGACTTCACAGCACCCGAGCCCACCCCTCCCCCTGC CTCCATCCCTGCCTCCTTCCCTGCTTCCTCCTTCCAGATGGAAGCGCCTG TCGCGACGGCGGCCGGCCCACCTCCCTCCCTCCCTCCTTCCCTCCCTGTG GTGGAGATGACGAGCAGCGGTAAGCCCAAGCTCTCCACGGACCAGCTTTT ATCCATGTTCATGAACCCTGCAGCTCCCCCACAGCCGCAGCAGCAGCAGC CAGGCATGTATGGGGGTCAGGGCTTCGCGCAACCCGGCTACCCCAACCAC CACTATCAACAGCACCGGCAGCATCAGCAACCGCATTATCAGCAGTATCA GCAGCACCAGCAGCACCAGCAGTACGACAAACATCTTTCTCATCATCAGC ACCAGCGCCAGCAGCAGCAGAATCCGTTCGAACCCCCTTCGTCTGGCGGA CTAGGGATGATGGGAGGGATGGGGGGAGGAATGGCCGTTTCCCAGCAGCA GCAGCAGCAGCAGCAGCGACAGACGCATCAGGATGGATTCGGGTTAGGGG TGACTTCCATGATGCCTCCTCCCTCCCTCCACCCATCCCTGCCTGCTACC TACCCTCCGCAGCAGCAGCCGCAGCAGCCCGTGTGGTCGCCGCAATCGCA GCAAGGGGGAGGGGGAGGAGGGATGAATGGGTTTCCTTTCTAG back to top