NO16G00070.2, NO16G00070.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00070.2
Unique NameNO16G00070.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1251
Alignment locationchr16:24463..26831 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:24463..26831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00070.2 vs.
Match: KUF86206.1 (Stromal membrane-associated protein 2 [Phytophthora nicotianae])

HSP 1 Score: 162.2 bits (409), Expect = 3.500e-36
Identity = 116/279 (41.58%), Postives = 147/279 (52.69%), Query Frame = 0 
Query:   15 QADNKKRLENLLKQPDNQVCADCPERGPRWASATMGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFL---PR---DGSVPARQLVASSRNHEP--------SSSTSSSTSSSSRERKPRDLA---DLLDFTAPEPTPPPASIPASFPASSFQMEAPVATAAGPPPSLPPSLPVVEMTSSG-------KPKLSTDQLLSMFMNPAA----PPQPQQQQPGMYGGQGFA 266
            Q   KK+L  L+K  +N+ CADC  RGPRWAS  +G FICI CSGIHR+LGVH++FVRSVNLD W T+ V+QM+RWGN RA+ Y+EA VP  Y  P++ S+V+    WIRDKYE KRF+   PR   D     ++  +S    EP         +S+   + +SSRE  P   A   D+L F         A +P S PA+S    APV  AA P      S        SG       +P    DQ ++   N  A      QPQQQQ      QG A
Sbjct:   13 QTKLKKQLNELMKLEENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTTDQVQQMQRWGNARAKGYYEANVPRDYRIPTEHSSVRDKEMWIRDKYERKRFVGEAPRENEDRGARRKKHSSSEEEEEPRQRRKDKERTSSRHGSRTSSREATPTQPAVTQDILSFDVFS-----APVPESKPAASLVDAAPV--AAAPKQDEWASFGGSSNAQSGFKDAFAPQPPAPADQHVNKMANIMASFGSSTQPQQQQNAFPPQQGMA 284
The following BLAST results are available for this feature:
BLAST of NO16G00070.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KUF86206.13.500e-3641.58Stromal membrane-associated protein 2 [Phytophthor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00070NO16G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00070.2NO16G00070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00070.2.cds1NO16G00070.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.2.cds2NO16G00070.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.2.cds3NO16G00070.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.2.cds4NO16G00070.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.2.cds5NO16G00070.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.2.cds6NO16G00070.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00070.2.cds7NO16G00070.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00070.2 ID=NO16G00070.2|Name=NO16G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp
ACAGGCTTGCCCTTCTCCTCCCCTCCGTCCTAACCCATCCTAATGGCGTC
CCGCCGCTCGCCGCTGGCGGGAACAACGACGGTGCAGGCTGACAATAAAA
AAAGATTGGAGAATCTTTTGAAGCAGCCGGACAACCAGGTCTGCGCTGAC
TGCCCAGAACGAGGGCCCCGCTGGGCCTCGGCCACGATGGGCACCTTTAT
CTGCATTAAGTGCAGTGGCATCCACCGCAACCTGGGCGTGCACATCTCCT
TCGTCCGCTCTGTTAACCTGGATGAATGGAAGACGGAGCACGTCGAGCAA
ATGGAACGCTGGGGTAACGGTCGCGCGCGAGCCTATTTCGAGGCGGAGGT
ACCCTCGTCCTATGCCCGCCCCTCAGACTGGTCTAATGTGCAGCAGATGA
CCAAGTGGATACGGGACAAGTACGAATACAAACGTTTCCTGCCCCGCGAC
GGCTCGGTGCCAGCGCGTCAGTTGGTGGCGTCGTCACGCAATCACGAGCC
CTCCTCCTCAACCTCCTCCTCGACCTCCTCTTCCTCGCGGGAGCGCAAGC
CCCGGGACCTCGCCGACCTCTTGGACTTCACAGCACCCGAGCCCACCCCT
CCCCCTGCCTCCATCCCTGCCTCCTTCCCTGCTTCCTCCTTCCAGATGGA
AGCGCCTGTCGCGACGGCGGCCGGCCCACCTCCCTCCCTCCCTCCTTCCC
TCCCTGTGGTGGAGATGACGAGCAGCGGTAAGCCCAAGCTCTCCACGGAC
CAGCTTTTATCCATGTTCATGAACCCTGCAGCTCCCCCACAGCCGCAGCA
GCAGCAGCCAGGCATGTATGGGGGTCAGGGCTTCGCGCAACCCGGCTACC
CCAACCACCACTATCAACAGCACCGGCAGCATCAGCAACCGCATTATCAG
CAGTATCAGCAGCACCAGCAGCACCAGCAGTACGACAAACATCTTTCTCA
TCATCAGCACCAGCGCCAGCAGCAGCAGAATCCGTTCGAACCCCCTTCGT
CTGGCGGACTAGGGATGATGGGAGGGATGGGGGGAGGAATGGCCGTTTCC
CAGCAGCAGCAGCAGCAGCAGCAGCGACAGACGCATCAGGATGGATTCGG
GTTAGGGGTGACTTCCATGATGCCTCCTCCCTCCCTCCACCCATCCCTGC
CTGCTACCTACCCTCCGCAGCAGCAGCCGCAGCAGCCCGTGTGGTCGCCG
CAATCGCAGCAAGGGGGAGGGGGAGGAGGGATGAATGGGTTTCCTTTCTA
G
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protein sequence of NO16G00070.2

>NO16G00070.2-protein ID=NO16G00070.2-protein|Name=NO16G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MASRRSPLAGTTTVQADNKKRLENLLKQPDNQVCADCPERGPRWASATMG
TFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAYFE
AEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSVPARQLVASSRN
HEPSSSTSSSTSSSSRERKPRDLADLLDFTAPEPTPPPASIPASFPASSF
QMEAPVATAAGPPPSLPPSLPVVEMTSSGKPKLSTDQLLSMFMNPAAPPQ
PQQQQPGMYGGQGFAQPGYPNHHYQQHRQHQQPHYQQYQQHQQHQQYDKH
LSHHQHQRQQQQNPFEPPSSGGLGMMGGMGGGMAVSQQQQQQQQRQTHQD
GFGLGVTSMMPPPSLHPSLPATYPPQQQPQQPVWSPQSQQGGGGGGMNGF
PF*
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mRNA from alignment at chr16:24463..26831+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00070.2 ID=NO16G00070.2|Name=NO16G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2369bp|location=Sequence derived from alignment at chr16:24463..26831+ (Nannochloropsis oceanica)
ACAGGCTTGCCCTTCTCCTCCCCTCCGTCCTAACCCATCCTAATGGCGTC
CCGCCGCTCGCCGCTGGCGGGAACAACGACGGTGCAGGCTGACAATAAAA
AAAGATTGGAGAATCTTTTGAAGCAGCCGGACAACCAGGTCTGCGCTGAC
TGCCCAGAACGAGGTACGTTTCGATAGGTTTACACTCCCCCTCTCGCCTT
CTCTTCCATTCCCCCCCCCCACGGCTATACACGGACGGTACATCGCGTAA
CGAGAAGGGCGCTCGAGGAAACATGCTGACGAGTTGGAACAGACGAGACG
CGTAGAGCTGGTTGGTCTAATGTGGAGGAAGACCCACAGAGGGCTCTGCA
CCTCTCGACCCGCTCTCTTCCATACCCCGCACCACCCGTTGACATACAAG
CCATCTAGGAACGGTGCTTGTCAATCATTCCCTTATTCATCCCCTTTCTC
ACAGTAATCGTATGTACTGTCGTTCAACCCCTCCCTCTCTTCCTCTCTGG
CTCTCTTCACACACAGGGCCCCGCTGGGCCTCGGCCACGATGGGCACCTT
TATCTGCATTAAGTGCAGTGGCATCCACCGCAACCTGGGCGTGCACATCT
CCTTCGTCCGCTCTGTTAACCTGGATGAATGGAAGACGGAGCACGTCGAG
GTGAGGGAGGGAGGGAGGGAGAGAGGAGGAGGGCTGTAGTTGGACTGGCA
CCTGTGTCATTCAGCAGCCTGGGAAAGTACGTGCTCTGTCTCTTCCACCC
TACTCACCGCTCTTCGAAAACAATTAAAACCAACAGCAAATGGAACGCTG
GGGTAACGGTCGCGCGCGAGCCTATTTCGAGGCGGAGGTACCCTCGTCCT
ATGCCCGCCCCTCAGACTGGTCTAATGTGCAGCAGATGACCAAGTGGATA
CGGGTGAGCACAGGGATAGAAGGAGGGAGGGGGGGGGGAAGGGGGGCAGA
GAGTGAAAGACCAGCCAATTTGTCTGGTGTACTATCATAGATGTGTGTAC
TCTCTCGTGGTCTCACATCCCTCCCCTCCCTCCCTTCCTTCTTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCACAGGACAAGTACGA
ATACAAACGTTTCCTGCCCCGCGACGGCTCGGTGCCAGCGCGTCAGTTGG
TGGCGTCGTCACGGTACGTCTCGCGGGGAGGAATGAGGGAAGGAGGAAGG
GAAGGAGGGAGGGAGGGAGGGACAGCCACAGCTGAACCTAGTTATGCCAC
CCCACGTCCCCTCCGCGTCTCACGTCTTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCTCCTTTCCTGTCTTTACCCTTCGCAATATGCACCTGGCAG
CAATCACGAGCCCTCCTCCTCAACCTCCTCCTCGACCTCCTCTTCCTCGC
GGGAGCGCAAGCCCCGGGACCGTCCCTCCCCCGCCCCTCCCCTTCCCTCC
CCCCCCCCTCCTCCTCCTCCTCCTCCACCACCACCACCGCACCTTCTTTG
GTGAAGGCCAAAGCGGCTCCCACGCCAGTCGCCGACCTCTTGGACTTCAC
AGCACCCGAGCCCACCCCTCCCCCTGCCTCCATCCCTGCCTCCTTCCCTG
CTTCCTCCTTCCAGATGGAAGCGCCTGTCGCGACGGCGGCCGGCCCACCT
CCCTCCCTCCCTCCTTCCCTCCCTGTGGTGGAGATGACGAGCAGCGGTAA
GCCCAAGCTCTCCACGGACCAGCTTTTATCCATGTTCATGAACCCTGCAG
CTCCCCCACAGCCGCAGCAGCAGCAGCCAGGTGAGAGGGAGGGGGGAGGG
AAGGACGGAGGGAGAGAGGCTGCTTGCATGTCCTATTTCCCTCGAAACAA
TCATTCATTCTCTCTCCTTCCCGTCCCTTTTTCTTTTCATTCCTGTCTCT
CTTTCCTTCCTTGCTTTTTCCCCTTCCAGGCATGTATGGGGGTCAGGGCT
TCGCGCAACCCGGCTACCCCAACCACCACTATCAACAGCACCGGCAGCAT
CAGCAACCGCATTATCAGCAGTATCAGCAGCACCAGCAGCACCAGCAGTA
CGACAAACATCTTTCTCATCATCAGCACCAGCGCCAGCAGCAGCAGAATC
CGTTCGAACCCCCTTCGTCTGGCGGACTAGGGATGATGGGAGGGATGGGG
GGAGGAATGGCCGTTTCCCAGCAGCAGCAGCAGCAGCAGCAGCGACAGAC
GCATCAGGATGGATTCGGGTTAGGGGTGACTTCCATGATGCCTCCTCCCT
CCCTCCACCCATCCCTGCCTGCTACCTACCCTCCGCAGCAGCAGCCGCAG
CAGCCCGTGTGGTCGCCGCAATCGCAGCAAGGGGGAGGGGGAGGAGGGAT
GAATGGGTTTCCTTTCTAG
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Coding sequence (CDS) from alignment at chr16:24463..26831+

>NO16G00070.2 ID=NO16G00070.2|Name=NO16G00070.2|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr16:24463..26831+ (Nannochloropsis oceanica)
ATGGCGTCCCGCCGCTCGCCGCTGGCGGGAACAACGACGGTGCAGGCTGA
CAATAAAAAAAGATTGGAGAATCTTTTGAAGCAGCCGGACAACCAGGTCT
GCGCTGACTGCCCAGAACGAGGGCCCCGCTGGGCCTCGGCCACGATGGGC
ACCTTTATCTGCATTAAGTGCAGTGGCATCCACCGCAACCTGGGCGTGCA
CATCTCCTTCGTCCGCTCTGTTAACCTGGATGAATGGAAGACGGAGCACG
TCGAGCAAATGGAACGCTGGGGTAACGGTCGCGCGCGAGCCTATTTCGAG
GCGGAGGTACCCTCGTCCTATGCCCGCCCCTCAGACTGGTCTAATGTGCA
GCAGATGACCAAGTGGATACGGGACAAGTACGAATACAAACGTTTCCTGC
CCCGCGACGGCTCGGTGCCAGCGCGTCAGTTGGTGGCGTCGTCACGCAAT
CACGAGCCCTCCTCCTCAACCTCCTCCTCGACCTCCTCTTCCTCGCGGGA
GCGCAAGCCCCGGGACCTCGCCGACCTCTTGGACTTCACAGCACCCGAGC
CCACCCCTCCCCCTGCCTCCATCCCTGCCTCCTTCCCTGCTTCCTCCTTC
CAGATGGAAGCGCCTGTCGCGACGGCGGCCGGCCCACCTCCCTCCCTCCC
TCCTTCCCTCCCTGTGGTGGAGATGACGAGCAGCGGTAAGCCCAAGCTCT
CCACGGACCAGCTTTTATCCATGTTCATGAACCCTGCAGCTCCCCCACAG
CCGCAGCAGCAGCAGCCAGGCATGTATGGGGGTCAGGGCTTCGCGCAACC
CGGCTACCCCAACCACCACTATCAACAGCACCGGCAGCATCAGCAACCGC
ATTATCAGCAGTATCAGCAGCACCAGCAGCACCAGCAGTACGACAAACAT
CTTTCTCATCATCAGCACCAGCGCCAGCAGCAGCAGAATCCGTTCGAACC
CCCTTCGTCTGGCGGACTAGGGATGATGGGAGGGATGGGGGGAGGAATGG
CCGTTTCCCAGCAGCAGCAGCAGCAGCAGCAGCGACAGACGCATCAGGAT
GGATTCGGGTTAGGGGTGACTTCCATGATGCCTCCTCCCTCCCTCCACCC
ATCCCTGCCTGCTACCTACCCTCCGCAGCAGCAGCCGCAGCAGCCCGTGT
GGTCGCCGCAATCGCAGCAAGGGGGAGGGGGAGGAGGGATGAATGGGTTT
CCTTTCTAG
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Synonyms
Publications