NO15G02470, NO15G02470 (gene) Nannochloropsis oceanica

Overview
NameNO15G02470
Unique NameNO15G02470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2067
Alignment locationchr15:676558..678624 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA-binding SAP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:676558..678624 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR019380Casein_kinase_sb_PP28
IPR003034SAP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO15G02470 vs. NCBI_GenBank
Match: EWM22326.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 144.4 bits (363), Expect = 5.100e-31
Identity = 155/248 (62.50%), Postives = 169/248 (68.15%), Query Frame = 0
Query:   23 PVKQRFNKGKFKSFNRGRSYVSSEEDMERRDRFEGWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQETVEGLTRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRAXXXXXXXXXXXXXXXXXXXXXXXXXGAAALE-GGGEGPGGFEKLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRL 270
            P KQ+ NKGKFK F+R  +YV+SEEDMERRDRFE WK            XXX    XXXXXXXXXXXXXXXXXXXXXXX                             XXXXXXXXXXXXX      +TRKER+EAA+EKARE+YLR+YREGET++A+KDLARLAEV  XXXXXXXXXXXXXXX          GA A E G GEG    E LDPREIKKM+G KLKECLKERGLSTQGQKKEL+DRL
Sbjct:   57 PAKQQINKGKFKRFSRSHNYVTSEEDMERRDRFEDWK-----QRKKGGDXXXVAEGXXXXXXXXXXXXXXXXXXXXXXXEDGAGGMAEAFKKKVQVRDLPPAESGSEEXXXXXXXXXXXXXXXXXXXMTRKEREEAAREKAREEYLRRYREGETEEAKKDLARLAEVXXXXXXXXXXXXXXXXXREALNERLRLGAEAAEAGAGEGGKAIEALDPREIKKMSGTKLKECLKERGLSTQGQKKELVDRL 299          
BLAST of NO15G02470 vs. NCBI_GenBank
Match: CCI50250.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 70.9 bits (172), Expect = 7.200e-9
Identity = 52/124 (41.94%), Postives = 68/124 (54.84%), Query Frame = 0
Query:  150 LTRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRAXXXXXXXXXXXXXXXXXXXXXXXXXGAAALEGG---GEGPGGFEKLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRLV 271
            LTRKER+   KE+A  +Y+R++  GET +A+KDLARLAEVR                           AAA++      +     E LD R IK +    LK+ LKERGLSTQGQKK+L+ RL+
Sbjct:  133 LTRKEREAIDKERAASEYMRRHLAGETTEAKKDLARLAEVR-----------KRREVAELRRKETEEAAAAMQAKLTVNDTDETEEVLDARSIKALKPAILKDKLKERGLSTQGQKKDLVQRLI 245          
BLAST of NO15G02470 vs. NCBI_GenBank
Match: CCA26306.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 68.6 bits (166), Expect = 3.600e-8
Identity = 49/121 (40.50%), Postives = 62/121 (51.24%), Query Frame = 0
Query:  150 LTRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRAXXXXXXXXXXXXXXXXXXXXXXXXXGAAALEGGGEGPGGFEKLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRLV 271
            LTRKER+    E+A  +Y+R++  GET +A+KDLARLAEVR                                   E     E LD R IK +    LK+ LKERGLSTQGQKK+L+ RL+
Sbjct:  135 LTRKEREAIDHERAASEYMRRHLAGETTEAKKDLARLAEVRRRREVAEIRRK------------------------ETEEAEEVLDARAIKALKPAVLKDKLKERGLSTQGQKKDLVQRLI 231          
BLAST of NO15G02470 vs. NCBI_GenBank
Match: CCA24820.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-7
Identity = 60/121 (49.59%), Postives = 74/121 (61.16%), Query Frame = 0
Query:  150 LTRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRAXXXXXXXXXXXXXXXXXXXXXXXXXGAAALEGGGEGPGGFEKLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRLV 271
            LTRKER+    E+A  +Y+R++  GET +A+KDLARLAEVR      XXXXXXXXXXXXX                +       LD R IK +    LK+ LKERGLSTQGQKK+L+ RL+
Sbjct:  135 LTRKEREAIDHERAASEYMRRHLAGETTEAKKDLARLAEVRRRREVAXXXXXXXXXXXXXLRAKLVI--------NDTXXXXXVLDARAIKALKPAVLKDKLKERGLSTQGQKKDLVQRLI 247          
BLAST of NO15G02470 vs. NCBI_GenBank
Match: XP_024572035.1 (28 kda heat-and acid-stable phospho [Plasmopara halstedii] >CEG35666.1 28 kda heat-and acid-stable phospho [Plasmopara halstedii])

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-7
Identity = 68/123 (55.28%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  150 LTRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRAXXXXXXXXXXXXXXXXXXXXXXXXXGAAALEGGGEGPGGFEKLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRLVAF 273
            L+R+ER+   KE+A   YL+K+  GETD+A+KDLARLAEV        XXXXXXXXXXXXXXXXXXX               E LD R IK +    LKE LKER LSTQGQKKEL+ RL+ +
Sbjct:  119 LSRREREAIEKERAAAYYLKKHLAGETDEAKKDLARLAEV--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPLDARAIKALKPAVLKEKLKERDLSTQGQKKELIQRLIDY 233          
BLAST of NO15G02470 vs. NCBI_GenBank
Match: POM60059.1 (hypothetical protein PHPALM_31127 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-7
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 0
Query:  150 LTRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRAXXXXXXXXXXXXXXXXXXXXXXXXXGAAALEGGGEGPGGFEKLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRLVAF 273
            L+R+ER+   KE+A   Y++K+  GETD+A+KDLARLAE   XXXXXXXXXXXXXXXXXXXXXXXXX     +         E LD R IK +    LKE LKER LSTQGQKKEL+ RL+ +
Sbjct:  142 LSRREREAIEKERAAAYYMKKHLAGETDEAKKDLARLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNDD--------EPLDARAIKALKPAVLKEKLKERNLSTQGQKKELIQRLIDY 256          
BLAST of NO15G02470 vs. NCBI_GenBank
Match: POM76267.1 (hypothetical protein PHPALM_6513 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-7
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 0
Query:  150 LTRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRAXXXXXXXXXXXXXXXXXXXXXXXXXGAAALEGGGEGPGGFEKLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRLVAF 273
            L+R+ER+   KE+A   Y++K+  GETD+A+KDLARLAE   XXXXXXXXXXXXXXXXXXXXXXXXX     +         E LD R IK +    LKE LKER LSTQGQKKEL+ RL+ +
Sbjct:  142 LSRREREAIEKERAAAYYMKKHLAGETDEAKKDLARLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNDD--------EPLDARAIKALKPAVLKEKLKERNLSTQGQKKELIQRLIDY 256          
The following BLAST results are available for this feature:
BLAST of NO15G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM22326.15.100e-3162.50DNA-binding SAP [Nannochloropsis gaditana][more]
CCI50250.17.200e-941.94unnamed protein product [Albugo candida][more]
CCA26306.13.600e-840.50conserved hypothetical protein [Albugo laibachii N... [more]
CCA24820.13.000e-749.59conserved hypothetical protein [Albugo laibachii N... [more]
XP_024572035.13.000e-755.2828 kda heat-and acid-stable phospho [Plasmopara ha... [more]
POM60059.13.000e-758.54hypothetical protein PHPALM_31127 [Phytophthora pa... [more]
POM76267.13.000e-758.54hypothetical protein PHPALM_6513 [Phytophthora pal... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001318NSK001318Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02470.1NO15G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670547gene_4805Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100118g13gene8116Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02470.1NO15G02470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02470 ID=NO15G02470|Name=NO15G02470|organism=Nannochloropsis oceanica|type=gene|length=2067bp
GCCCTGTCCTTGTCGAATATTATTATTGACCCCTTTCCTAAAAATGTACC
CTCGGGGATGGCATTCACTTGCGCACGCCGAAGCAGTTAAACTGTACCAT
GCAGAGCACCTATCCGGGCGGAATGCGTAGATCCTGTGTACTTCAGCCCA
CGAAGTTTCTTTCCATCCTCACTTTCGCAGCTCGGACTCGCCAAGCACGG
TCGACATCAACCTTGCGATAAATTCTTGCCTTGGTCAAAGGGCTCCATGC
TGTAGATCCCTTCTTGCTTCCCACGCGCCTGCGCTATGCATTCTCACCCT
GATCCTTAACATCACAGGTTTCTTACATTTCTGGTCGTCCTCGCTCCCCA
GCATCAACGTCGGGGAAGACAGGGAGCACGGGCAGGAGCGGAGCAGTAGC
TTCATCAACAAGGAATCCATCGTCCTCTCATCAAACCTCATTCATGGGCA
AACGCGGTGgtgagtttctattctcccccgagccatgccttcaaatgctt
gtctcacacctgactttcctccttgtctcctccacgggcgcaaacagGTG
GTGGCGGCAGTGGCCGTGGAGGAAGCGGGGAGACTGACGGCGCGGCCCCA
GTGAAGCAGCGGTTTAACAAGGGAAAATTCAAGAGCTTCAATCGCGGACG
CAGgtacgtacagagagtggtggttagaaggtgaatgtgtattttgttgt
cttaaatccacatattttgtcgtataaatcagcgcttgcgaaaccctcat
ttttggtgttctattctcccttccttcctccctccctcccttcctagCTA
TGTGAGCTCGGAAGAGGACATGGAACGTCGCGATCGCTTCGAGGGCTGGA
AGCAGAAGAAAAAGAATGGCGGCGATGACTCTGATATAGAGGAGGGAGAA
AGTGGGGAGGAGGAGAGCAGTAGTGAGGAGGAGGAAGGGCAAGAGGGTGG
AAACGAGAATGGAGGGGAGAAGCTGGCGGCTTCGTTTAAGAAGAAGGTGC
AAGTTGGAGATTTGCCCCCCGCAGACGGTGAGTCTTCGGACGAGGAAGAA
GAGCAAGATGGTGGGGGAGGAGGGGGAGGGAGGGTGGCCGGAAGGGCACC
TCCACAGGAGACTGTGGAAGGGTTGACGAGAAAGGAGAGGGACGAGGCGG
CGAAGGAGAAGGCGCGGGAGGATTACTTGAGGAAATACAGGGAGGGAGAA
ACGGATCAGGCACGCAAGGATCTGGCACGGCTGGCCGAGGTGAGGGCGAG
GCGAGAAGAAGCAGCCAGGAAGAAGGAAGAGGAGTTGAAGCgtaagttct
tgacaagggaagggagggtgagagggagggagggagggagggttggatgg
ggtaggggataaggtaattgtggataacggagggcttatattctcctctt
gtttgccttgtgctttcgcttacctgtttcttctttcctcctatgtctct
tcaaccattacacacgcacacccatgcacacccactaactccaatacaca
tccgcttctaccaacacacaaacgacgttaacctaccagTGCGGACCGAA
CAAGAAGAACGCCAGAGATTGGGCGCGGCGGCCTTGGAGGGCGGGGGAGA
GGGACCGGGGGGCTTTGAGAAGCTGGATCCCAGGGAGATTAAGAAAATGA
ATGGGCCGAAGCTGAAGGAATGTCTGAAAGAGAGGGGTCTGTCGACACAG
GGGCAGAAGAAGGAGTTGATGGACCGGTTGGTGGCGTTTGCGGCGGGTAA
GTAGGAGGTAGCGTTGAGGAAGGGGGTGGGAGGGGAGGGGGCGATGGGTG
GGAGGGGGAGGGAAGGTATGATGGTGGTATGTTCGAGACAAGGTGACGGA
AAAGCGCAGCGGCAGAAACACCTGCATCTTTGAAGACTTCAAACGCAAGG
CTGCAGAGGCTATCTGCAAGAAGAGAAGACGAGATGAATCAAGTTGAATT
GTGACGTGCAACAAGTTGACTTGTAACGGGCGATAAGTTGATTTGTAACG
GTTGAAAGTCGTGAGACCTTCAAAAGAAAAGGGAGGGAACAATTCTTGTC
ACACTCGTTCCGCGTTT
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protein sequence of NO15G02470.1

>NO15G02470.1-protein ID=NO15G02470.1-protein|Name=NO15G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MGKRGGGGGSGRGGSGETDGAAPVKQRFNKGKFKSFNRGRSYVSSEEDME
RRDRFEGWKQKKKNGGDDSDIEEGESGEEESSSEEEEGQEGGNENGGEKL
AASFKKKVQVGDLPPADGESSDEEEEQDGGGGGGGRVAGRAPPQETVEGL
TRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRARREEAARKK
EEELKLRTEQEERQRLGAAALEGGGEGPGGFEKLDPREIKKMNGPKLKEC
LKERGLSTQGQKKELMDRLVAFAAGK*
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Synonyms
Publications