jgi.p|Nanoce1779_2|670547, gene_4805 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670547
Unique Namegene_4805
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_9:663242..670084 -

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Properties
Property NameValue
TranscriptId670633
ProteinId670547
Product nametRNA synthetases class II (A)-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:663242..670084 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0043039tRNA aminoacylation
GO:0006412translation
GO:0006419alanyl-tRNA aminoacylation
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004813alanine-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL006ncniL006Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02470NO15G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670547mRNA_4805-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670547mRNA_4805Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|670547

>mRNA_4805-protein ID=mRNA_4805-protein|Name=jgi.p|Nanoce1779_2|670547|organism=Nannochloropsis oceanica|type=polypeptide|length=1395bp
MTATSSHATREKIGELVPVVALPLDACGLFQKPLRREHGDDSSNVNKSGR
APQQMNSGVRISPSGHRLAMVVMLFTVATRTCRGFLVPYPGQRAGVLNRA
AGASLMRRHSPHSSPSLRPALLLRMSASSLSPPSFSSPSSSFSAENWPVN
RVRQTFIDYFIEKHGHSFVPSSPVVPLSDPTLLFTNAGMNQFKPIFLGQA
DPNGPLAKLEKAVNTQKCIRAGGKHNDLEDVGMDTYHHTFFEMLGSWSFG
NYFKQEAIAWSWDLLTNVYALPADRLYVTYFGGDDSMGVPADEEARDLWL
RFLPPDRVLPFGKKDNFWEMGDTGPCGPCSEIHYDRVGGTEGGRDAAKLV
NADDPDVLEIWNLVFIQYNREAAGEGAGEEGGGGLRLLPSQHVDTGMGLE
RLVSVLQNKKSNYDSDAFMPLFAAIEKDVGCRPYAGKLGKEDVGLVDTAY
RVVADHARTLTFAIADGALPSNEGRGYVLRRVLRRAVRYGKQMLGARPGF
FARLVPCVVREFGQFYPELKEKEGWIQEVIEGEEKGFGEMLERGIKYFGE
EVVEGLKKEGGKVVSAEKAFFMYDTLGFPVDLTRLMALEEGLEVDVEGFG
EEMEKAKQRMDETAWLQAAGIQATEDEGKYVWEEGKEGKVVALFTHEGFK
EEVGGEREGQGKGMVGVVLDSTSFYAEAGGQVADTGRLVVGGRERGVEME
VLDVQVFAGYVLHICRLVEGGREGGAAAAKIKVGEKVACHVDYERRRRVA
PNHTMTHVLNFALREVLGGQVAQRGSLVNDEKLRFDFSHGGAMAVEEMEK
VEAIVRGVIEKKLPVTSQVVGLEAAKGINGLRAVFGEVYPDPVRVIAVGE
EVETLLASPEKEAWAKLSVEFCGGTHVRNTEEAQSFVLVEETAVAKGVRR
VTGVTGEAAQAAIEAGAALSAQVKAAEEGPKGVELEGKVVELRQALDGVL
LSASLKPRLRKRIDDLGKKAAAERKAAAQAGIDQALSRVKGAIEEAKSQS
FLVLELAVGLDSKAVKRLVETSKNLAPGLAVLVVSREDDGKALAFAHVPP
EKAGHLPADKWVAATLAVVGGRGGGKAELAQGQAKDVAADQVQGSVKAAQ
AFASEALANINVGEDREHGQERSSGGGSGRGGSGETDGAAPVKQRFNKGK
FKSFNRGRSYVSSEEDMERRDRFEGWKQKKKNGGDDSDIEEGESGEEESS
SEEEEGQEGGNENGGEKLAASFKKKVQVGDLPPADGESSDEEEEQDGGGG
GGGRVAGRAPPQETVEGLTRKERDEAAKEKAREDYLRKYREGETEQARKD
LARLAEVRARREEAARKKEEELKLRTEQEERQRLGAAALEGGGEGPGGFE
KLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRLVAFAAGK*
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Synonyms
Publications