NO15G02470.1, NO15G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02470.1
Unique NameNO15G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1587
Alignment locationchr15:676558..678624 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:676558..678624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02470.1 vs.
Match: EWM22326.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 271.2 bits (692), Expect = 3.600e-69
Identity = 176/268 (65.67%), Postives = 200/268 (74.63%), Query Frame = 0 
Query:    7 GGGSGRGGSGETDGAAPVKQRFNKGKFKSFNRGRSYVSSEEDMERRDRFEGWKQKKKNGGDDSDIEEGESGEEESSSEEEEGQEGGNENGGEK----LAASFKKKVQVGDLPPADGESSDEEEEQDGGGGGGGRVAGRAPPQETVEGLTRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRARREEAARKKEEELKLRTEQEERQRLGAAALE-GGGEGPGGFEKLDPREIKKMNGPKLKECLKERGLSTQGQKKELMDRL 270
            GGGSGR      +G AP KQ+ NKGKFK F+R  +YV+SEEDMERRDRFE WKQ+KK GGDD D+ EGESGEEE SSE E G+  G E G E     +A +FKKKVQV DLPPA+  S +E+      GG  GR  G        EG+TRKER+EAA+EKARE+YLR+YREGET++A+KDLARLAEVRARREEAARKKEEE+K R    ER RLGA A E G GEG    E LDPREIKKM+G KLKECLKERGLSTQGQKKEL+DRL
Sbjct:   47 GGGSGR------EGGAPAKQQINKGKFKRFSRSHNYVTSEEDMERRDRFEDWKQRKK-GGDDDDVAEGESGEEEGSSEGEGGEGKGGERGPEDGAGGMAEAFKKKVQVRDLPPAESGSEEEDYNGPSKGGQQGREGG--------EGMTRKEREEAAREKAREEYLRRYREGETEEAKKDLARLAEVRARREEAARKKEEEVKAREALNERLRLGAEAAEAGAGEGGKAIEALDPREIKKMSGTKLKECLKERGLSTQGQKKELVDRL 299
The following BLAST results are available for this feature:
BLAST of NO15G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22326.13.600e-6965.67DNA-binding SAP [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02470NO15G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02470.1NO15G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02470.1.cds1NO15G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02470.1.cds2NO15G02470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02470.1.cds3NO15G02470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02470.1.cds4NO15G02470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02470.1 ID=NO15G02470.1|Name=NO15G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp
GCCCTGTCCTTGTCGAATATTATTATTGACCCCTTTCCTAAAAATGTACC
CTCGGGGATGGCATTCACTTGCGCACGCCGAAGCAGTTAAACTGTACCAT
GCAGAGCACCTATCCGGGCGGAATGCGTAGATCCTGTGTACTTCAGCCCA
CGAAGTTTCTTTCCATCCTCACTTTCGCAGCTCGGACTCGCCAAGCACGG
TCGACATCAACCTTGCGATAAATTCTTGCCTTGGTCAAAGGGCTCCATGC
TGTAGATCCCTTCTTGCTTCCCACGCGCCTGCGCTATGCATTCTCACCCT
GATCCTTAACATCACAGGTTTCTTACATTTCTGGTCGTCCTCGCTCCCCA
GCATCAACGTCGGGGAAGACAGGGAGCACGGGCAGGAGCGGAGCAGTAGC
TTCATCAACAAGGAATCCATCGTCCTCTCATCAAACCTCATTCATGGGCA
AACGCGGTGGTGGTGGCGGCAGTGGCCGTGGAGGAAGCGGGGAGACTGAC
GGCGCGGCCCCAGTGAAGCAGCGGTTTAACAAGGGAAAATTCAAGAGCTT
CAATCGCGGACGCAGCTATGTGAGCTCGGAAGAGGACATGGAACGTCGCG
ATCGCTTCGAGGGCTGGAAGCAGAAGAAAAAGAATGGCGGCGATGACTCT
GATATAGAGGAGGGAGAAAGTGGGGAGGAGGAGAGCAGTAGTGAGGAGGA
GGAAGGGCAAGAGGGTGGAAACGAGAATGGAGGGGAGAAGCTGGCGGCTT
CGTTTAAGAAGAAGGTGCAAGTTGGAGATTTGCCCCCCGCAGACGGTGAG
TCTTCGGACGAGGAAGAAGAGCAAGATGGTGGGGGAGGAGGGGGAGGGAG
GGTGGCCGGAAGGGCACCTCCACAGGAGACTGTGGAAGGGTTGACGAGAA
AGGAGAGGGACGAGGCGGCGAAGGAGAAGGCGCGGGAGGATTACTTGAGG
AAATACAGGGAGGGAGAAACGGATCAGGCACGCAAGGATCTGGCACGGCT
GGCCGAGGTGAGGGCGAGGCGAGAAGAAGCAGCCAGGAAGAAGGAAGAGG
AGTTGAAGCTGCGGACCGAACAAGAAGAACGCCAGAGATTGGGCGCGGCG
GCCTTGGAGGGCGGGGGAGAGGGACCGGGGGGCTTTGAGAAGCTGGATCC
CAGGGAGATTAAGAAAATGAATGGGCCGAAGCTGAAGGAATGTCTGAAAG
AGAGGGGTCTGTCGACACAGGGGCAGAAGAAGGAGTTGATGGACCGGTTG
GTGGCGTTTGCGGCGGGTAAGTAGGAGGTAGCGTTGAGGAAGGGGGTGGG
AGGGGAGGGGGCGATGGGTGGGAGGGGGAGGGAAGGTATGATGGTGGTAT
GTTCGAGACAAGGTGACGGAAAAGCGCAGCGGCAGAAACACCTGCATCTT
TGAAGACTTCAAACGCAAGGCTGCAGAGGCTATCTGCAAGAAGAGAAGAC
GAGATGAATCAAGTTGAATTGTGACGTGCAACAAGTTGACTTGTAACGGG
CGATAAGTTGATTTGTAACGGTTGAAAGTCGTGAGACCTTCAAAAGAAAA
GGGAGGGAACAATTCTTGTCACACTCGTTCCGCGTTT
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protein sequence of NO15G02470.1

>NO15G02470.1-protein ID=NO15G02470.1-protein|Name=NO15G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MGKRGGGGGSGRGGSGETDGAAPVKQRFNKGKFKSFNRGRSYVSSEEDME
RRDRFEGWKQKKKNGGDDSDIEEGESGEEESSSEEEEGQEGGNENGGEKL
AASFKKKVQVGDLPPADGESSDEEEEQDGGGGGGGRVAGRAPPQETVEGL
TRKERDEAAKEKAREDYLRKYREGETDQARKDLARLAEVRARREEAARKK
EEELKLRTEQEERQRLGAAALEGGGEGPGGFEKLDPREIKKMNGPKLKEC
LKERGLSTQGQKKELMDRLVAFAAGK*
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mRNA from alignment at chr15:676558..678624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02470.1 ID=NO15G02470.1|Name=NO15G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp|location=Sequence derived from alignment at chr15:676558..678624- (Nannochloropsis oceanica)
GCCCTGTCCTTGTCGAATATTATTATTGACCCCTTTCCTAAAAATGTACC
CTCGGGGATGGCATTCACTTGCGCACGCCGAAGCAGTTAAACTGTACCAT
GCAGAGCACCTATCCGGGCGGAATGCGTAGATCCTGTGTACTTCAGCCCA
CGAAGTTTCTTTCCATCCTCACTTTCGCAGCTCGGACTCGCCAAGCACGG
TCGACATCAACCTTGCGATAAATTCTTGCCTTGGTCAAAGGGCTCCATGC
TGTAGATCCCTTCTTGCTTCCCACGCGCCTGCGCTATGCATTCTCACCCT
GATCCTTAACATCACAGGTTTCTTACATTTCTGGTCGTCCTCGCTCCCCA
GCATCAACGTCGGGGAAGACAGGGAGCACGGGCAGGAGCGGAGCAGTAGC
TTCATCAACAAGGAATCCATCGTCCTCTCATCAAACCTCATTCATGGGCA
AACGCGGTGGTGAGTTTCTATTCTCCCCCGAGCCATGCCTTCAAATGCTT
GTCTCACACCTGACTTTCCTCCTTGTCTCCTCCACGGGCGCAAACAGGTG
GTGGCGGCAGTGGCCGTGGAGGAAGCGGGGAGACTGACGGCGCGGCCCCA
GTGAAGCAGCGGTTTAACAAGGGAAAATTCAAGAGCTTCAATCGCGGACG
CAGGTACGTACAGAGAGTGGTGGTTAGAAGGTGAATGTGTATTTTGTTGT
CTTAAATCCACATATTTTGTCGTATAAATCAGCGCTTGCGAAACCCTCAT
TTTTGGTGTTCTATTCTCCCTTCCTTCCTCCCTCCCTCCCTTCCTAGCTA
TGTGAGCTCGGAAGAGGACATGGAACGTCGCGATCGCTTCGAGGGCTGGA
AGCAGAAGAAAAAGAATGGCGGCGATGACTCTGATATAGAGGAGGGAGAA
AGTGGGGAGGAGGAGAGCAGTAGTGAGGAGGAGGAAGGGCAAGAGGGTGG
AAACGAGAATGGAGGGGAGAAGCTGGCGGCTTCGTTTAAGAAGAAGGTGC
AAGTTGGAGATTTGCCCCCCGCAGACGGTGAGTCTTCGGACGAGGAAGAA
GAGCAAGATGGTGGGGGAGGAGGGGGAGGGAGGGTGGCCGGAAGGGCACC
TCCACAGGAGACTGTGGAAGGGTTGACGAGAAAGGAGAGGGACGAGGCGG
CGAAGGAGAAGGCGCGGGAGGATTACTTGAGGAAATACAGGGAGGGAGAA
ACGGATCAGGCACGCAAGGATCTGGCACGGCTGGCCGAGGTGAGGGCGAG
GCGAGAAGAAGCAGCCAGGAAGAAGGAAGAGGAGTTGAAGCGTAAGTTCT
TGACAAGGGAAGGGAGGGTGAGAGGGAGGGAGGGAGGGAGGGTTGGATGG
GGTAGGGGATAAGGTAATTGTGGATAACGGAGGGCTTATATTCTCCTCTT
GTTTGCCTTGTGCTTTCGCTTACCTGTTTCTTCTTTCCTCCTATGTCTCT
TCAACCATTACACACGCACACCCATGCACACCCACTAACTCCAATACACA
TCCGCTTCTACCAACACACAAACGACGTTAACCTACCAGTGCGGACCGAA
CAAGAAGAACGCCAGAGATTGGGCGCGGCGGCCTTGGAGGGCGGGGGAGA
GGGACCGGGGGGCTTTGAGAAGCTGGATCCCAGGGAGATTAAGAAAATGA
ATGGGCCGAAGCTGAAGGAATGTCTGAAAGAGAGGGGTCTGTCGACACAG
GGGCAGAAGAAGGAGTTGATGGACCGGTTGGTGGCGTTTGCGGCGGGTAA
GTAGGAGGTAGCGTTGAGGAAGGGGGTGGGAGGGGAGGGGGCGATGGGTG
GGAGGGGGAGGGAAGGTATGATGGTGGTATGTTCGAGACAAGGTGACGGA
AAAGCGCAGCGGCAGAAACACCTGCATCTTTGAAGACTTCAAACGCAAGG
CTGCAGAGGCTATCTGCAAGAAGAGAAGACGAGATGAATCAAGTTGAATT
GTGACGTGCAACAAGTTGACTTGTAACGGGCGATAAGTTGATTTGTAACG
GTTGAAAGTCGTGAGACCTTCAAAAGAAAAGGGAGGGAACAATTCTTGTC
ACACTCGTTCCGCGTTT
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Coding sequence (CDS) from alignment at chr15:676558..678624-

>NO15G02470.1 ID=NO15G02470.1|Name=NO15G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at chr15:676558..678624- (Nannochloropsis oceanica)
ATGGGCAAACGCGGTGGTGGTGGCGGCAGTGGCCGTGGAGGAAGCGGGGA
GACTGACGGCGCGGCCCCAGTGAAGCAGCGGTTTAACAAGGGAAAATTCA
AGAGCTTCAATCGCGGACGCAGCTATGTGAGCTCGGAAGAGGACATGGAA
CGTCGCGATCGCTTCGAGGGCTGGAAGCAGAAGAAAAAGAATGGCGGCGA
TGACTCTGATATAGAGGAGGGAGAAAGTGGGGAGGAGGAGAGCAGTAGTG
AGGAGGAGGAAGGGCAAGAGGGTGGAAACGAGAATGGAGGGGAGAAGCTG
GCGGCTTCGTTTAAGAAGAAGGTGCAAGTTGGAGATTTGCCCCCCGCAGA
CGGTGAGTCTTCGGACGAGGAAGAAGAGCAAGATGGTGGGGGAGGAGGGG
GAGGGAGGGTGGCCGGAAGGGCACCTCCACAGGAGACTGTGGAAGGGTTG
ACGAGAAAGGAGAGGGACGAGGCGGCGAAGGAGAAGGCGCGGGAGGATTA
CTTGAGGAAATACAGGGAGGGAGAAACGGATCAGGCACGCAAGGATCTGG
CACGGCTGGCCGAGGTGAGGGCGAGGCGAGAAGAAGCAGCCAGGAAGAAG
GAAGAGGAGTTGAAGCTGCGGACCGAACAAGAAGAACGCCAGAGATTGGG
CGCGGCGGCCTTGGAGGGCGGGGGAGAGGGACCGGGGGGCTTTGAGAAGC
TGGATCCCAGGGAGATTAAGAAAATGAATGGGCCGAAGCTGAAGGAATGT
CTGAAAGAGAGGGGTCTGTCGACACAGGGGCAGAAGAAGGAGTTGATGGA
CCGGTTGGTGGCGTTTGCGGCGGGTAAGTAG
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Synonyms
Publications