NO15G01840, NO15G01840 (gene) Nannochloropsis oceanica

Overview
NameNO15G01840
Unique NameNO15G01840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1555
Alignment locationchr15:522502..524056 -

Link to JBrowse

Properties
Property NameValue
DescriptionUDENN
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:522502..524056 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO15G01840 vs. NCBI_GenBank
Match: EWM22387.1 (uDENN [Nannochloropsis gaditana])

HSP 1 Score: 417.5 bits (1072), Expect = 5.200e-113
Identity = 267/543 (49.17%), Postives = 315/543 (58.01%), Query Frame = 0 
Query:    1 MPLDEEIMTLRQDLLLAHAVDDLANNLLLCPKCETPLVPRLYYDIKTFQHGVM-ACGADDSIYNHQHHQNFGTPSSPTSSIFPVTETLSQTEAVALSPAQAQVARTIGSMSPSTEVAEAESVVL----NLLDGSASARPANMSACSVAPALDA---SLSASVTDNSDGLHLRGEVSGLGPGTMEGDHVDYLSPFTLHMRLEKLLLEHGEECLTRDWARVHQPELYWNLVWFTTRLSIPIPILLDSLDPVLADAAVANFRAPECER--------------------HRAMSPPG------------------------------------------------TAPSP---------TSAGVLSTPEYFAYAPS---AFLVSETLRQQFVGWGAAAISPVESVDAIGPLTVDQLFPNVSAQELDAINELCKTLLAKDGPGLKEVISQFYTLKHKQGGWTSEAILGSSYRVLLKLAANFHVKKLHNIAPISNLMANPGLEHEYTTAVMKLGDRFMRDNVGKDERQLLAELPKRDAIKFRSVFGHLY 456
            MPLDEEIMTLRQ+     AVDD  N+LLLCPKCETPL+PRLYYDIKTF+  VM +C    S+   +   +F T +S   +I  ++       + A S   +    T G++S  TE  +  +  +     +L+   S R    ++   +PA  A   +LS SV + +     RGE+SGL  GT  GDHV YLSPFTL MRLEKLLLE GE CLTRDWAR HQPELYWNLVWFTTRLSIP P LLDSLDP  ADAA+ +F     +R                     R++  PG                                                T P           T AGVL  P +    PS      +SE LRQQ +G   A    VE  DAIGPLTV QL PN+S QEL+AI E+ + LL +   GLKE I+QF+ LK KQGGWTSEA LGS YRV LKLAANFH+KKLHNIAPISNLMANPGLEHEYTTAVM+LGDRF+R+  G+DERQLLAELPKRDAIKFRS FG LY
Sbjct: 1285 MPLDEEIMTLRQE----QAVDDQTNHLLLCPKCETPLMPRLYYDIKTFKDHVMDSC----SMKGEKTKADFSTQAS-QENILEIS-----LSSYAESSLHSSGVSTGGNISMPTEANKHVTSKMVEPQAILEQDVSGRKRLSASNDFSPAATAWEDALSGSVAEKT-AREQRGEISGLPSGTTGGDHVGYLSPFTLRMRLEKLLLEDGEMCLTRDWARTHQPELYWNLVWFTTRLSIPFPFLLDSLDPSFADAAMNSFSTTSPDRMGSNAQPTAEKAVKGYFSNTFRSIHSPGMSRQDSTERLAQFFFHEVVVVGWEGEVVRNRCEKVETMLKQRSFELRVTPPKASSNVGSYTITGAGVL--PTFQLSVPSISTTMTLSEALRQQIIGVETAMAKTVEYSDAIGPLTVAQLLPNISTQELEAIEEVKRILLIEGCAGLKEAITQFFILKEKQGGWTSEASLGSPYRVFLKLAANFHIKKLHNIAPISNLMANPGLEHEYTTAVMRLGDRFVREKAGQDERQLLAELPKRDAIKFRSAFGPLY 1810
The following BLAST results are available for this feature:
BLAST of NO15G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22387.15.200e-11349.17uDENN [Nannochloropsis gaditana][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL142nonsL142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001399NSK001399Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01840.1NO15G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587692gene_4735Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100067g9gene8032Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01840.1NO15G01840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01840 ID=NO15G01840|Name=NO15G01840|organism=Nannochloropsis oceanica|type=gene|length=1555bp
ATGCCCTTGGACGAGGAGATCATGACGCTGCGGCAGGATCTACTGCTAGC
CCATGCGGTCGATGACCTCGCGAACAACCTTCTTCTCTGCCCTAAGTGTG
AAACTCCTCTTGTGCCCCGCCTCTACTATGATATCAAGACGTTCCAACAC
GGTGTCATGGCTTGCGGTGCAGATGATTCAATTTATAACCACCAGCATCA
CCAAAATTTTGGCACGCCTAGTTCCCCAACATCGTCTATCTTCCCGGTCA
CAGAAACACTGTCGCAGACCGAAGCAGTAGCGCTGAGCCCCGCGCAGGCT
CAAGTGGCCCGCACAATTGGGAGTATGAGCCCATCTACTGAGGTCGCTGA
GGCGGAATCGGTAGTCCTGAATCTTTTGGACGGTTCGGCAAGCGCGCGCC
CTGCCAATATGAGTGCCTGCTCCGTTGCGCCTGCATTGGACGCATCTCTG
TCAGCAAGCGTGACGGATAATTCGGACGGGCTACATTTGCGCGGGGAGGT
GTCCGGGCTGGGTCCAGGGACTATGGAAGGGGACCATGTGGACTATTTAA
GTCCATTCACTCTCCATATGCGGCTTGAGAAGCTTTTACTGGAGCATGGG
GAGGAGTGCCTGACCCGGGATTGGGCCCGAGTGCACCAACCAGAGCTGTA
TTGGAATCTGGTATGGTTCACCACACGACTGTCGATCCCAATTCCGATCT
TGCTAGACTCCCTAGATCCTGTTTTGGCCGATGCCGCAGTAGCAAACTTC
CGTGCGCCCGAGTGCGAACgtaagaagaagacccttcagttgctgaacag
ctgcggtatttttcgacaggactcgatggaacggcttgatatgctcttct
tccatgaggtggtggtggttggctgggagggagatgtcgtgcgcaaccga
tgcgaaaaggtggaggtcatgctgaagcagcgcttgctcaaaccgccgcc
aaacagGTCATCGAGCAATGTCGCCGCCGGGAACAGCGCCATCACCTACC
AGCGCTGGAGTCCTGTCTACCCCCGAGTACTTTGCCTACGCCCCTTCGGC
TTTTCTCGTAAGCGAGACATTGCGGCAGCAGTTTGTCGGCTGGGGGGCAG
CAGCAATCAGCCCAGTTGAATCCGTGGATGCAATTGGGCCCTTGACCGTC
GACCAGCTATTCCCGAACGTATCAGCGCAGGAGCTGGACGCTATCAACGA
ACTCTGCAAGACGCTGTTGGCCAAGGATGGTCCCGGTTTGAAGGAGGTCA
TCTCCCAGTTCTATACCCTCAAGCACAAGCAGGGAGGTTGGACCTCTGAG
GCTATCTTAGGCTCCTCTTACCGAGTCTTGCTGAAGCTGGCGGCCAACTT
TCACGTCAAGAAGCTGCACAACATCGCGCCGATCTCAAACCTGATGGCGA
ACCCAGGTTTGGAGCACGAGTATACCACCGCTGTCATGAAGTTAGGCGAC
CGATTCATGCGAGACAATGTGGGAAAGGATGAGCGGCAGTTGTTGGCAGA
ATTGCCGAAACGGGACGCTATCAAGTTCCGCTCAGTGTTTGGACATCTAT
ATTGA
back to top

protein sequence of NO15G01840.1

>NO15G01840.1-protein ID=NO15G01840.1-protein|Name=NO15G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MPLDEEIMTLRQDLLLAHAVDDLANNLLLCPKCETPLVPRLYYDIKTFQH
GVMACGADDSIYNHQHHQNFGTPSSPTSSIFPVTETLSQTEAVALSPAQA
QVARTIGSMSPSTEVAEAESVVLNLLDGSASARPANMSACSVAPALDASL
SASVTDNSDGLHLRGEVSGLGPGTMEGDHVDYLSPFTLHMRLEKLLLEHG
EECLTRDWARVHQPELYWNLVWFTTRLSIPIPILLDSLDPVLADAAVANF
RAPECERHRAMSPPGTAPSPTSAGVLSTPEYFAYAPSAFLVSETLRQQFV
GWGAAAISPVESVDAIGPLTVDQLFPNVSAQELDAINELCKTLLAKDGPG
LKEVISQFYTLKHKQGGWTSEAILGSSYRVLLKLAANFHVKKLHNIAPIS
NLMANPGLEHEYTTAVMKLGDRFMRDNVGKDERQLLAELPKRDAIKFRSV
FGHLY*
back to top
Synonyms
Publications