NO15G01840.1, NO15G01840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01840.1
Unique NameNO15G01840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr15:522502..524056 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:522502..524056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G01840.1 vs.
Match: EWM22387.1 (uDENN [Nannochloropsis gaditana])

HSP 1 Score: 243.4 bits (620), Expect = 1.300e-60
Identity = 127/186 (68.28%), Postives = 144/186 (77.42%), Query Frame = 0 
Query:  271 TSAGVLSTPEYFAYAPSAFL-VSETLRQQFVGWGAAAISPVESVDAIGPLTVDQLFPNVSAQELDAINELCKTLLAKDGPGLKEVISQFYTLKHKQGGWTSEAILGSSYRVLLKLAANFHVKKLHNIAPISNLMANPGLEHEYTTAVMKLGDRFMRDNVGKDERQLLAELPKRDAIKFRSVFGHLY 456
            T AGVL T +    + S  + +SE LRQQ +G   A    VE  DAIGPLTV QL PN+S QEL+AI E+ + LL +   GLKE I+QF+ LK KQGGWTSEA LGS YRV LKLAANFH+KKLHNIAPISNLMANPGLEHEYTTAVM+LGDRF+R+  G+DERQLLAELPKRDAIKFRS FG LY
Sbjct: 1625 TGAGVLPTFQLSVPSISTTMTLSEALRQQIIGVETAMAKTVEYSDAIGPLTVAQLLPNISTQELEAIEEVKRILLIEGCAGLKEAITQFFILKEKQGGWTSEASLGSPYRVFLKLAANFHIKKLHNIAPISNLMANPGLEHEYTTAVMRLGDRFVREKAGQDERQLLAELPKRDAIKFRSAFGPLY 1810
The following BLAST results are available for this feature:
BLAST of NO15G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22387.11.300e-6068.28uDENN [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01840NO15G01840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01840.1NO15G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01840.1.cds1NO15G01840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01840.1.cds2NO15G01840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01840.1 ID=NO15G01840.1|Name=NO15G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
ATGCCCTTGGACGAGGAGATCATGACGCTGCGGCAGGATCTACTGCTAGC
CCATGCGGTCGATGACCTCGCGAACAACCTTCTTCTCTGCCCTAAGTGTG
AAACTCCTCTTGTGCCCCGCCTCTACTATGATATCAAGACGTTCCAACAC
GGTGTCATGGCTTGCGGTGCAGATGATTCAATTTATAACCACCAGCATCA
CCAAAATTTTGGCACGCCTAGTTCCCCAACATCGTCTATCTTCCCGGTCA
CAGAAACACTGTCGCAGACCGAAGCAGTAGCGCTGAGCCCCGCGCAGGCT
CAAGTGGCCCGCACAATTGGGAGTATGAGCCCATCTACTGAGGTCGCTGA
GGCGGAATCGGTAGTCCTGAATCTTTTGGACGGTTCGGCAAGCGCGCGCC
CTGCCAATATGAGTGCCTGCTCCGTTGCGCCTGCATTGGACGCATCTCTG
TCAGCAAGCGTGACGGATAATTCGGACGGGCTACATTTGCGCGGGGAGGT
GTCCGGGCTGGGTCCAGGGACTATGGAAGGGGACCATGTGGACTATTTAA
GTCCATTCACTCTCCATATGCGGCTTGAGAAGCTTTTACTGGAGCATGGG
GAGGAGTGCCTGACCCGGGATTGGGCCCGAGTGCACCAACCAGAGCTGTA
TTGGAATCTGGTATGGTTCACCACACGACTGTCGATCCCAATTCCGATCT
TGCTAGACTCCCTAGATCCTGTTTTGGCCGATGCCGCAGTAGCAAACTTC
CGTGCGCCCGAGTGCGAACGTCATCGAGCAATGTCGCCGCCGGGAACAGC
GCCATCACCTACCAGCGCTGGAGTCCTGTCTACCCCCGAGTACTTTGCCT
ACGCCCCTTCGGCTTTTCTCGTAAGCGAGACATTGCGGCAGCAGTTTGTC
GGCTGGGGGGCAGCAGCAATCAGCCCAGTTGAATCCGTGGATGCAATTGG
GCCCTTGACCGTCGACCAGCTATTCCCGAACGTATCAGCGCAGGAGCTGG
ACGCTATCAACGAACTCTGCAAGACGCTGTTGGCCAAGGATGGTCCCGGT
TTGAAGGAGGTCATCTCCCAGTTCTATACCCTCAAGCACAAGCAGGGAGG
TTGGACCTCTGAGGCTATCTTAGGCTCCTCTTACCGAGTCTTGCTGAAGC
TGGCGGCCAACTTTCACGTCAAGAAGCTGCACAACATCGCGCCGATCTCA
AACCTGATGGCGAACCCAGGTTTGGAGCACGAGTATACCACCGCTGTCAT
GAAGTTAGGCGACCGATTCATGCGAGACAATGTGGGAAAGGATGAGCGGC
AGTTGTTGGCAGAATTGCCGAAACGGGACGCTATCAAGTTCCGCTCAGTG
TTTGGACATCTATATTGA
back to top

protein sequence of NO15G01840.1

>NO15G01840.1-protein ID=NO15G01840.1-protein|Name=NO15G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MPLDEEIMTLRQDLLLAHAVDDLANNLLLCPKCETPLVPRLYYDIKTFQH
GVMACGADDSIYNHQHHQNFGTPSSPTSSIFPVTETLSQTEAVALSPAQA
QVARTIGSMSPSTEVAEAESVVLNLLDGSASARPANMSACSVAPALDASL
SASVTDNSDGLHLRGEVSGLGPGTMEGDHVDYLSPFTLHMRLEKLLLEHG
EECLTRDWARVHQPELYWNLVWFTTRLSIPIPILLDSLDPVLADAAVANF
RAPECERHRAMSPPGTAPSPTSAGVLSTPEYFAYAPSAFLVSETLRQQFV
GWGAAAISPVESVDAIGPLTVDQLFPNVSAQELDAINELCKTLLAKDGPG
LKEVISQFYTLKHKQGGWTSEAILGSSYRVLLKLAANFHVKKLHNIAPIS
NLMANPGLEHEYTTAVMKLGDRFMRDNVGKDERQLLAELPKRDAIKFRSV
FGHLY*
back to top

mRNA from alignment at chr15:522502..524056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01840.1 ID=NO15G01840.1|Name=NO15G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp|location=Sequence derived from alignment at chr15:522502..524056- (Nannochloropsis oceanica)
ATGCCCTTGGACGAGGAGATCATGACGCTGCGGCAGGATCTACTGCTAGC
CCATGCGGTCGATGACCTCGCGAACAACCTTCTTCTCTGCCCTAAGTGTG
AAACTCCTCTTGTGCCCCGCCTCTACTATGATATCAAGACGTTCCAACAC
GGTGTCATGGCTTGCGGTGCAGATGATTCAATTTATAACCACCAGCATCA
CCAAAATTTTGGCACGCCTAGTTCCCCAACATCGTCTATCTTCCCGGTCA
CAGAAACACTGTCGCAGACCGAAGCAGTAGCGCTGAGCCCCGCGCAGGCT
CAAGTGGCCCGCACAATTGGGAGTATGAGCCCATCTACTGAGGTCGCTGA
GGCGGAATCGGTAGTCCTGAATCTTTTGGACGGTTCGGCAAGCGCGCGCC
CTGCCAATATGAGTGCCTGCTCCGTTGCGCCTGCATTGGACGCATCTCTG
TCAGCAAGCGTGACGGATAATTCGGACGGGCTACATTTGCGCGGGGAGGT
GTCCGGGCTGGGTCCAGGGACTATGGAAGGGGACCATGTGGACTATTTAA
GTCCATTCACTCTCCATATGCGGCTTGAGAAGCTTTTACTGGAGCATGGG
GAGGAGTGCCTGACCCGGGATTGGGCCCGAGTGCACCAACCAGAGCTGTA
TTGGAATCTGGTATGGTTCACCACACGACTGTCGATCCCAATTCCGATCT
TGCTAGACTCCCTAGATCCTGTTTTGGCCGATGCCGCAGTAGCAAACTTC
CGTGCGCCCGAGTGCGAACGTAAGAAGAAGACCCTTCAGTTGCTGAACAG
CTGCGGTATTTTTCGACAGGACTCGATGGAACGGCTTGATATGCTCTTCT
TCCATGAGGTGGTGGTGGTTGGCTGGGAGGGAGATGTCGTGCGCAACCGA
TGCGAAAAGGTGGAGGTCATGCTGAAGCAGCGCTTGCTCAAACCGCCGCC
AAACAGGTCATCGAGCAATGTCGCCGCCGGGAACAGCGCCATCACCTACC
AGCGCTGGAGTCCTGTCTACCCCCGAGTACTTTGCCTACGCCCCTTCGGC
TTTTCTCGTAAGCGAGACATTGCGGCAGCAGTTTGTCGGCTGGGGGGCAG
CAGCAATCAGCCCAGTTGAATCCGTGGATGCAATTGGGCCCTTGACCGTC
GACCAGCTATTCCCGAACGTATCAGCGCAGGAGCTGGACGCTATCAACGA
ACTCTGCAAGACGCTGTTGGCCAAGGATGGTCCCGGTTTGAAGGAGGTCA
TCTCCCAGTTCTATACCCTCAAGCACAAGCAGGGAGGTTGGACCTCTGAG
GCTATCTTAGGCTCCTCTTACCGAGTCTTGCTGAAGCTGGCGGCCAACTT
TCACGTCAAGAAGCTGCACAACATCGCGCCGATCTCAAACCTGATGGCGA
ACCCAGGTTTGGAGCACGAGTATACCACCGCTGTCATGAAGTTAGGCGAC
CGATTCATGCGAGACAATGTGGGAAAGGATGAGCGGCAGTTGTTGGCAGA
ATTGCCGAAACGGGACGCTATCAAGTTCCGCTCAGTGTTTGGACATCTAT
ATTGA
back to top

Coding sequence (CDS) from alignment at chr15:522502..524056-

>NO15G01840.1 ID=NO15G01840.1|Name=NO15G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr15:522502..524056- (Nannochloropsis oceanica)
ATGCCCTTGGACGAGGAGATCATGACGCTGCGGCAGGATCTACTGCTAGC
CCATGCGGTCGATGACCTCGCGAACAACCTTCTTCTCTGCCCTAAGTGTG
AAACTCCTCTTGTGCCCCGCCTCTACTATGATATCAAGACGTTCCAACAC
GGTGTCATGGCTTGCGGTGCAGATGATTCAATTTATAACCACCAGCATCA
CCAAAATTTTGGCACGCCTAGTTCCCCAACATCGTCTATCTTCCCGGTCA
CAGAAACACTGTCGCAGACCGAAGCAGTAGCGCTGAGCCCCGCGCAGGCT
CAAGTGGCCCGCACAATTGGGAGTATGAGCCCATCTACTGAGGTCGCTGA
GGCGGAATCGGTAGTCCTGAATCTTTTGGACGGTTCGGCAAGCGCGCGCC
CTGCCAATATGAGTGCCTGCTCCGTTGCGCCTGCATTGGACGCATCTCTG
TCAGCAAGCGTGACGGATAATTCGGACGGGCTACATTTGCGCGGGGAGGT
GTCCGGGCTGGGTCCAGGGACTATGGAAGGGGACCATGTGGACTATTTAA
GTCCATTCACTCTCCATATGCGGCTTGAGAAGCTTTTACTGGAGCATGGG
GAGGAGTGCCTGACCCGGGATTGGGCCCGAGTGCACCAACCAGAGCTGTA
TTGGAATCTGGTATGGTTCACCACACGACTGTCGATCCCAATTCCGATCT
TGCTAGACTCCCTAGATCCTGTTTTGGCCGATGCCGCAGTAGCAAACTTC
CGTGCGCCCGAGTGCGAACGTCATCGAGCAATGTCGCCGCCGGGAACAGC
GCCATCACCTACCAGCGCTGGAGTCCTGTCTACCCCCGAGTACTTTGCCT
ACGCCCCTTCGGCTTTTCTCGTAAGCGAGACATTGCGGCAGCAGTTTGTC
GGCTGGGGGGCAGCAGCAATCAGCCCAGTTGAATCCGTGGATGCAATTGG
GCCCTTGACCGTCGACCAGCTATTCCCGAACGTATCAGCGCAGGAGCTGG
ACGCTATCAACGAACTCTGCAAGACGCTGTTGGCCAAGGATGGTCCCGGT
TTGAAGGAGGTCATCTCCCAGTTCTATACCCTCAAGCACAAGCAGGGAGG
TTGGACCTCTGAGGCTATCTTAGGCTCCTCTTACCGAGTCTTGCTGAAGC
TGGCGGCCAACTTTCACGTCAAGAAGCTGCACAACATCGCGCCGATCTCA
AACCTGATGGCGAACCCAGGTTTGGAGCACGAGTATACCACCGCTGTCAT
GAAGTTAGGCGACCGATTCATGCGAGACAATGTGGGAAAGGATGAGCGGC
AGTTGTTGGCAGAATTGCCGAAACGGGACGCTATCAAGTTCCGCTCAGTG
TTTGGACATCTATATTGA
back to top
Synonyms
Publications