NO15G01640, NO15G01640 (gene) Nannochloropsis oceanica

Overview
NameNO15G01640
Unique NameNO15G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1196
Alignment locationchr15:460802..461997 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:460802..461997 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
Homology
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BLAST of NO15G01640 vs. NCBI_GenBank
Match: EWM22478.1 (dna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 69.3 bits (168), Expect = 1.300e-8
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 0 
Query:    1 MEKLLLGAANEARVKAQSKSRRSCGSGRTKPMSVEGVLTVTPDDIQAFILKNDELQFLRDRVKETQESGYLESYRARVREGNKASSKTKLKAL 94
            +E+LL+GAA  AR    S SR+S      KP  +  V T+TP+DIQ+F+L   EL FL +RV+E+Q SGYLE YR R    +K  SK +++ L
Sbjct:   70 LERLLIGAAAHARA---SSSRQS----GIKPDGLHSV-TITPEDIQSFVLAAPELHFLGERVRESQASGYLEGYRTRTLNSSKVPSKGRVRGL 154
The following BLAST results are available for this feature:
BLAST of NO15G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22478.11.300e-846.24dna binding protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001442NSK001442Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01640.1NO15G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G01640.2NO15G01640.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G01640.3NO15G01640.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587602gene_4708Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g84gene8012Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01640.1NO15G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G01640.2NO15G01640.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G01640.3NO15G01640.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01640 ID=NO15G01640|Name=NO15G01640|organism=Nannochloropsis oceanica|type=gene|length=1196bp
CGCTTCTCTGGCGATCGAGGACAGGCGTCTGTGCATGTCCCGGTCCCTTA
CACTCAAAGGCAGGCACGATTCCATCCATCCACTATCTATACAGATAAAT
TACGCCAGTATCGTCGTGGTCGCCCTGGCGCGTTTGCGGATCGCCAGGGT
AGTTGTCCGAACAAACCAAGCTGAAACCGACCTCCCCATCCTACCTTCCC
TCCACAATTTTTGGCCGGAAGCGCCAGAGCACACACGACATGGAGGGCCA
GGAAGAGGAATGTGGTAGTGAGAAAGAGGGCAGCACGGATAATTTGATCA
TCAATATGgtacgtcttaaacgcatccctcgaaaatgccctttctaaccc
cccgagctacgcacacccccattataatagTCTCGCATCAGAGCCATCGC
CAAGCAAGACCCGGACGTGGGCGGGTTGAGCAAGGGTGCCGTGGCCACCA
TCAgtacgttctagcttccattccttcattctcatgcgtgccattgcgat
ggccaacccaccattcccgttttttaatcatcaccccaaatctagGTGCG
GCCACGCGGTGTCTCATGGAAAAGCTACTCCTTGGCGCCGCTAATGAAGC
AAGGGTCAAGGCTCAGAGCAAAAGCAGACGAAGCTGTGGCAGTGGCAGAA
CCAAGCCCATGTCGGTCGAGGGAGTCTTGACAGTCACACCCGATGATATg
taggtatccagaagggtgattgtcaccacctgcaatggacttactttcct
ctacacaacccatctaacagCCAAGCATTTATTCTCAAAAACGATGAGCT
CCAATTTCTTCGAGACCGCGTTAAGGAAACGCAAGAAAGCGGATACCTAG
AAAGCTACCGAGCCCGAGTGCGGGAAGGGAATAAAGCCTCCAGCAAAACA
AAATTGAAGGCACTTGTGGGTGGGGCCTTAGGAGGGGAGGGAAGACACGA
AAATGAGGAATGTAAAGACGAAGACGAAGACGACACTGTCGAGTCCGCGG
CTGCTGCTTTGGTGGCGACAGTGGATGGTGGCGGTGGTAGGGCGGGAGGA
GGATCTGGAGCAGGGGAGGCAGCAGCAGCGGCACCGGAAAAAGCCGAAAG
CATGGTGCTGGACGAGAATTATGGAGGCGAAGACTACTAAGGACATATGA
GAGAAGGGAGGCAAAAAGCAATATACATAGAAATCAGCAAATGGGT
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protein sequence of NO15G01640.1

>NO15G01640.1-protein ID=NO15G01640.1-protein|Name=NO15G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MEGQEEECGSEKEGSTDNLIINMSRIRAIAKQDPDVGGLSKGAVATISAA
TRCLMEKLLLGAANEARVKAQSKSRRSCGSGRTKPMSVEGVLTVTPDDIQ
AFILKNDELQFLRDRVKETQESGYLESYRARVREGNKASSKTKLKALVGG
ALGGEGRHENEECKDEDEDDTVESAAAALVATVDGGGGRAGGGSGAGEAA
AAAPEKAESMVLDENYGGEDY*
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protein sequence of NO15G01640.2

>NO15G01640.2-protein ID=NO15G01640.2-protein|Name=NO15G01640.2|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MEKLLLGAANEARVKAQSKSRRSCGSGRTKPMSVEGVLTVTPDDIQAFIL
KNDELQFLRDRVKETQESGYLESYRARVREGNKASSKTKLKALVGGALGG
EGRHENEECKDEDEDDTVESAAAALVATVDGGGGRAGGGSGAGEAAAAAP
EKAESMVLDENYGGEDY*
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protein sequence of NO15G01640.3

>NO15G01640.3-protein ID=NO15G01640.3-protein|Name=NO15G01640.3|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPFLTPRATHTPIIIVSHQSHRQARPGRGRVEQGCRGHHQYVLASIPSFS
CVPLRWPTHHSRFLIITPNLGAATRCLMEKLLLGAANEARVKAQSKSRRS
CGSGRTKPMSVEGVLTVTPDDIQAFILKNDELQFLRDRVKETQESGYLES
YRARVREGNKASSKTKLKALVGGALGGEGRHENEECKDEDEDDTVESAAA
ALVATVDGGGGRAGGGSGAGEAAAAAPEKAESMVLDENYGGEDY*
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Synonyms
Publications