NO15G01640.2, NO15G01640.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01640.2
Unique NameNO15G01640.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1033
Alignment locationchr15:460802..461997 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:460802..461997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01640.2 vs.
Match: EWM22478.1 (dna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 75.5 bits (184), Expect = 1.800e-10
Identity = 68/168 (40.48%), Postives = 90/168 (53.57%), Query Frame = 0 
Query:    1 MEKLLLGAANEARVKAQSKSRRSCGSGRTKPMSVEGVLTVTPDDIQAFILKNDELQFLRDRVKETQESGYLESYRARVREGNKASSKTK---LKALVGGALGGEGRHENEECKDEDEDDTVESAAAALVATVDGGGGRAGGGSGAGEAAAAAPEKAESMVLDENYGGE 166
            +E+LL+GAA  AR    S SR+S      KP  +  V T+TP+DIQ+F+L   EL FL +RV+E+Q SGYLE YR R    +K  SK +   LKAL+       G  ++++  D DEDD V S   A  A  D   G+       GE A      A  + LDE+YG E
Sbjct:   70 LERLLIGAAAHARA---SSSRQS----GIKPDGLHSV-TITPEDIQSFVLAAPELHFLGERVRESQASGYLEGYRTRTLNSSKVPSKGRVRGLKALINDGHATVGGADDKD--DFDEDDVVASMVVAGKAE-DKTAGKGAQSGARGEFAVGG--HAHMLDLDEDYGEE 224
The following BLAST results are available for this feature:
BLAST of NO15G01640.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22478.11.800e-1040.48dna binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01640NO15G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01640.2NO15G01640.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01640.2.cds1NO15G01640.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01640.2.cds2NO15G01640.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01640.2 ID=NO15G01640.2|Name=NO15G01640.2|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp
CGCTTCTCTGGCGATCGAGGACAGGCGTCTGTGCATGTCCCGGTCCCTTA
CACTCAAAGGCAGGCACGATTCCATCCATCCACTATCTATACAGATAAAT
TACGCCAGTATCGTCGTGGTCGCCCTGGCGCGTTTGCGGATCGCCAGGGT
AGTTGTCCGAACAAACCAAGCTGAAACCGACCTCCCCATCCTACCTTCCC
TCCACAATTTTTGGCCGGAAGCGCCAGAGCACACACGACATGGAGGGCCA
GGAAGAGGAATGTGGTAGTGAGAAAGAGGGCAGCACGGATAATTTGATCA
TCAATATGGTACGTCTTAAACGCATCCCTCGAAAATGCCCTTTCTAACCC
CCCGAGCTACGCACACCCCCATTATAATAGTCTCGCATCAGAGCCATCGC
CAAGCAAGACCCGGACGTGGGCGGGTTGAGCAAGGGTGCCGTGGCCACCA
TCAGTGCGGCCACGCGGTGTCTCATGGAAAAGCTACTCCTTGGCGCCGCT
AATGAAGCAAGGGTCAAGGCTCAGAGCAAAAGCAGACGAAGCTGTGGCAG
TGGCAGAACCAAGCCCATGTCGGTCGAGGGAGTCTTGACAGTCACACCCG
ATGATATCCAAGCATTTATTCTCAAAAACGATGAGCTCCAATTTCTTCGA
GACCGCGTTAAGGAAACGCAAGAAAGCGGATACCTAGAAAGCTACCGAGC
CCGAGTGCGGGAAGGGAATAAAGCCTCCAGCAAAACAAAATTGAAGGCAC
TTGTGGGTGGGGCCTTAGGAGGGGAGGGAAGACACGAAAATGAGGAATGT
AAAGACGAAGACGAAGACGACACTGTCGAGTCCGCGGCTGCTGCTTTGGT
GGCGACAGTGGATGGTGGCGGTGGTAGGGCGGGAGGAGGATCTGGAGCAG
GGGAGGCAGCAGCAGCGGCACCGGAAAAAGCCGAAAGCATGGTGCTGGAC
GAGAATTATGGAGGCGAAGACTACTAAGGACATATGAGAGAAGGGAGGCA
AAAAGCAATATACATAGAAATCAGCAAATGGGT
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protein sequence of NO15G01640.2

>NO15G01640.2-protein ID=NO15G01640.2-protein|Name=NO15G01640.2|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MEKLLLGAANEARVKAQSKSRRSCGSGRTKPMSVEGVLTVTPDDIQAFIL
KNDELQFLRDRVKETQESGYLESYRARVREGNKASSKTKLKALVGGALGG
EGRHENEECKDEDEDDTVESAAAALVATVDGGGGRAGGGSGAGEAAAAAP
EKAESMVLDENYGGEDY*
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mRNA from alignment at chr15:460802..461997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01640.2 ID=NO15G01640.2|Name=NO15G01640.2|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp|location=Sequence derived from alignment at chr15:460802..461997+ (Nannochloropsis oceanica)
CGCTTCTCTGGCGATCGAGGACAGGCGTCTGTGCATGTCCCGGTCCCTTA
CACTCAAAGGCAGGCACGATTCCATCCATCCACTATCTATACAGATAAAT
TACGCCAGTATCGTCGTGGTCGCCCTGGCGCGTTTGCGGATCGCCAGGGT
AGTTGTCCGAACAAACCAAGCTGAAACCGACCTCCCCATCCTACCTTCCC
TCCACAATTTTTGGCCGGAAGCGCCAGAGCACACACGACATGGAGGGCCA
GGAAGAGGAATGTGGTAGTGAGAAAGAGGGCAGCACGGATAATTTGATCA
TCAATATGGTACGTCTTAAACGCATCCCTCGAAAATGCCCTTTCTAACCC
CCCGAGCTACGCACACCCCCATTATAATAGTCTCGCATCAGAGCCATCGC
CAAGCAAGACCCGGACGTGGGCGGGTTGAGCAAGGGTGCCGTGGCCACCA
TCAGTACGTTCTAGCTTCCATTCCTTCATTCTCATGCGTGCCATTGCGAT
GGCCAACCCACCATTCCCGTTTTTTAATCATCACCCCAAATCTAGGTGCG
GCCACGCGGTGTCTCATGGAAAAGCTACTCCTTGGCGCCGCTAATGAAGC
AAGGGTCAAGGCTCAGAGCAAAAGCAGACGAAGCTGTGGCAGTGGCAGAA
CCAAGCCCATGTCGGTCGAGGGAGTCTTGACAGTCACACCCGATGATATG
TAGGTATCCAGAAGGGTGATTGTCACCACCTGCAATGGACTTACTTTCCT
CTACACAACCCATCTAACAGCCAAGCATTTATTCTCAAAAACGATGAGCT
CCAATTTCTTCGAGACCGCGTTAAGGAAACGCAAGAAAGCGGATACCTAG
AAAGCTACCGAGCCCGAGTGCGGGAAGGGAATAAAGCCTCCAGCAAAACA
AAATTGAAGGCACTTGTGGGTGGGGCCTTAGGAGGGGAGGGAAGACACGA
AAATGAGGAATGTAAAGACGAAGACGAAGACGACACTGTCGAGTCCGCGG
CTGCTGCTTTGGTGGCGACAGTGGATGGTGGCGGTGGTAGGGCGGGAGGA
GGATCTGGAGCAGGGGAGGCAGCAGCAGCGGCACCGGAAAAAGCCGAAAG
CATGGTGCTGGACGAGAATTATGGAGGCGAAGACTACTAAGGACATATGA
GAGAAGGGAGGCAAAAAGCAATATACATAGAAATCAGCAAATGGGT
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Coding sequence (CDS) from alignment at chr15:460802..461997+

>NO15G01640.2 ID=NO15G01640.2|Name=NO15G01640.2|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr15:460802..461997+ (Nannochloropsis oceanica)
ATGGAAAAGCTACTCCTTGGCGCCGCTAATGAAGCAAGGGTCAAGGCTCA
GAGCAAAAGCAGACGAAGCTGTGGCAGTGGCAGAACCAAGCCCATGTCGG
TCGAGGGAGTCTTGACAGTCACACCCGATGATATCCAAGCATTTATTCTC
AAAAACGATGAGCTCCAATTTCTTCGAGACCGCGTTAAGGAAACGCAAGA
AAGCGGATACCTAGAAAGCTACCGAGCCCGAGTGCGGGAAGGGAATAAAG
CCTCCAGCAAAACAAAATTGAAGGCACTTGTGGGTGGGGCCTTAGGAGGG
GAGGGAAGACACGAAAATGAGGAATGTAAAGACGAAGACGAAGACGACAC
TGTCGAGTCCGCGGCTGCTGCTTTGGTGGCGACAGTGGATGGTGGCGGTG
GTAGGGCGGGAGGAGGATCTGGAGCAGGGGAGGCAGCAGCAGCGGCACCG
GAAAAAGCCGAAAGCATGGTGCTGGACGAGAATTATGGAGGCGAAGACTA
CTAA
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Synonyms
Publications