NO15G01640.1, NO15G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01640.1
Unique NameNO15G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length961
Alignment locationchr15:460802..461997 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:460802..461997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01640.1 vs.
Match: EWM22478.1 (dna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 112.1 bits (279), Expect = 2.300e-21
Identity = 87/205 (42.44%), Postives = 118/205 (57.56%), Query Frame = 0 
Query:   18 NLIINMSRIRAIAKQDPDVGGLSKGAVATISAATRCLMEKLLLGAANEARVKAQSKSRRSCGSGRTKPMSVEGVLTVTPDDIQAFILKNDELQFLRDRVKETQESGYLESYRARVREGNKASSKTK---LKALVGGALGGEGRHENEECKDEDEDDTVESAAAALVATVDGGGGRAGGGSGAGEAAAAAPEKAESMVLDENYGGE 220
            + ++  SRI+AIAKQDP+VGGLS  AVA +  A++ ++E+LL+GAA  AR    S SR+S      KP  +  V T+TP+DIQ+F+L   EL FL +RV+E+Q SGYLE YR R    +K  SK +   LKAL+       G  ++++  D DEDD V S   A  A  D   G+       GE A      A  + LDE+YG E
Sbjct:   33 SFVVKKSRIKAIAKQDPNVGGLSADAVALVGIASQEMLERLLIGAAAHARA---SSSRQS----GIKPDGLHSV-TITPEDIQSFVLAAPELHFLGERVRESQASGYLEGYRTRTLNSSKVPSKGRVRGLKALINDGHATVGGADDKD--DFDEDDVVASMVVAGKAE-DKTAGKGAQSGARGEFAVGG--HAHMLDLDEDYGEE 224
The following BLAST results are available for this feature:
BLAST of NO15G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22478.12.300e-2142.44dna binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01640NO15G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01640.1NO15G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01640.1.cds1NO15G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01640.1.cds2NO15G01640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01640.1.cds3NO15G01640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01640.1.cds4NO15G01640.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01640.1 ID=NO15G01640.1|Name=NO15G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=961bp
CGCTTCTCTGGCGATCGAGGACAGGCGTCTGTGCATGTCCCGGTCCCTTA
CACTCAAAGGCAGGCACGATTCCATCCATCCACTATCTATACAGATAAAT
TACGCCAGTATCGTCGTGGTCGCCCTGGCGCGTTTGCGGATCGCCAGGGT
AGTTGTCCGAACAAACCAAGCTGAAACCGACCTCCCCATCCTACCTTCCC
TCCACAATTTTTGGCCGGAAGCGCCAGAGCACACACGACATGGAGGGCCA
GGAAGAGGAATGTGGTAGTGAGAAAGAGGGCAGCACGGATAATTTGATCA
TCAATATGTCTCGCATCAGAGCCATCGCCAAGCAAGACCCGGACGTGGGC
GGGTTGAGCAAGGGTGCCGTGGCCACCATCAGTGCGGCCACGCGGTGTCT
CATGGAAAAGCTACTCCTTGGCGCCGCTAATGAAGCAAGGGTCAAGGCTC
AGAGCAAAAGCAGACGAAGCTGTGGCAGTGGCAGAACCAAGCCCATGTCG
GTCGAGGGAGTCTTGACAGTCACACCCGATGATATCCAAGCATTTATTCT
CAAAAACGATGAGCTCCAATTTCTTCGAGACCGCGTTAAGGAAACGCAAG
AAAGCGGATACCTAGAAAGCTACCGAGCCCGAGTGCGGGAAGGGAATAAA
GCCTCCAGCAAAACAAAATTGAAGGCACTTGTGGGTGGGGCCTTAGGAGG
GGAGGGAAGACACGAAAATGAGGAATGTAAAGACGAAGACGAAGACGACA
CTGTCGAGTCCGCGGCTGCTGCTTTGGTGGCGACAGTGGATGGTGGCGGT
GGTAGGGCGGGAGGAGGATCTGGAGCAGGGGAGGCAGCAGCAGCGGCACC
GGAAAAAGCCGAAAGCATGGTGCTGGACGAGAATTATGGAGGCGAAGACT
ACTAAGGACATATGAGAGAAGGGAGGCAAAAAGCAATATACATAGAAATC
AGCAAATGGGT
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protein sequence of NO15G01640.1

>NO15G01640.1-protein ID=NO15G01640.1-protein|Name=NO15G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MEGQEEECGSEKEGSTDNLIINMSRIRAIAKQDPDVGGLSKGAVATISAA
TRCLMEKLLLGAANEARVKAQSKSRRSCGSGRTKPMSVEGVLTVTPDDIQ
AFILKNDELQFLRDRVKETQESGYLESYRARVREGNKASSKTKLKALVGG
ALGGEGRHENEECKDEDEDDTVESAAAALVATVDGGGGRAGGGSGAGEAA
AAAPEKAESMVLDENYGGEDY*
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mRNA from alignment at chr15:460802..461997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01640.1 ID=NO15G01640.1|Name=NO15G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp|location=Sequence derived from alignment at chr15:460802..461997+ (Nannochloropsis oceanica)
CGCTTCTCTGGCGATCGAGGACAGGCGTCTGTGCATGTCCCGGTCCCTTA
CACTCAAAGGCAGGCACGATTCCATCCATCCACTATCTATACAGATAAAT
TACGCCAGTATCGTCGTGGTCGCCCTGGCGCGTTTGCGGATCGCCAGGGT
AGTTGTCCGAACAAACCAAGCTGAAACCGACCTCCCCATCCTACCTTCCC
TCCACAATTTTTGGCCGGAAGCGCCAGAGCACACACGACATGGAGGGCCA
GGAAGAGGAATGTGGTAGTGAGAAAGAGGGCAGCACGGATAATTTGATCA
TCAATATGGTACGTCTTAAACGCATCCCTCGAAAATGCCCTTTCTAACCC
CCCGAGCTACGCACACCCCCATTATAATAGTCTCGCATCAGAGCCATCGC
CAAGCAAGACCCGGACGTGGGCGGGTTGAGCAAGGGTGCCGTGGCCACCA
TCAGTACGTTCTAGCTTCCATTCCTTCATTCTCATGCGTGCCATTGCGAT
GGCCAACCCACCATTCCCGTTTTTTAATCATCACCCCAAATCTAGGTGCG
GCCACGCGGTGTCTCATGGAAAAGCTACTCCTTGGCGCCGCTAATGAAGC
AAGGGTCAAGGCTCAGAGCAAAAGCAGACGAAGCTGTGGCAGTGGCAGAA
CCAAGCCCATGTCGGTCGAGGGAGTCTTGACAGTCACACCCGATGATATG
TAGGTATCCAGAAGGGTGATTGTCACCACCTGCAATGGACTTACTTTCCT
CTACACAACCCATCTAACAGCCAAGCATTTATTCTCAAAAACGATGAGCT
CCAATTTCTTCGAGACCGCGTTAAGGAAACGCAAGAAAGCGGATACCTAG
AAAGCTACCGAGCCCGAGTGCGGGAAGGGAATAAAGCCTCCAGCAAAACA
AAATTGAAGGCACTTGTGGGTGGGGCCTTAGGAGGGGAGGGAAGACACGA
AAATGAGGAATGTAAAGACGAAGACGAAGACGACACTGTCGAGTCCGCGG
CTGCTGCTTTGGTGGCGACAGTGGATGGTGGCGGTGGTAGGGCGGGAGGA
GGATCTGGAGCAGGGGAGGCAGCAGCAGCGGCACCGGAAAAAGCCGAAAG
CATGGTGCTGGACGAGAATTATGGAGGCGAAGACTACTAAGGACATATGA
GAGAAGGGAGGCAAAAAGCAATATACATAGAAATCAGCAAATGGGT
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Coding sequence (CDS) from alignment at chr15:460802..461997+

>NO15G01640.1 ID=NO15G01640.1|Name=NO15G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at chr15:460802..461997+ (Nannochloropsis oceanica)
ATGGAGGGCCAGGAAGAGGAATGTGGTAGTGAGAAAGAGGGCAGCACGGA
TAATTTGATCATCAATATGTCTCGCATCAGAGCCATCGCCAAGCAAGACC
CGGACGTGGGCGGGTTGAGCAAGGGTGCCGTGGCCACCATCAGTGCGGCC
ACGCGGTGTCTCATGGAAAAGCTACTCCTTGGCGCCGCTAATGAAGCAAG
GGTCAAGGCTCAGAGCAAAAGCAGACGAAGCTGTGGCAGTGGCAGAACCA
AGCCCATGTCGGTCGAGGGAGTCTTGACAGTCACACCCGATGATATCCAA
GCATTTATTCTCAAAAACGATGAGCTCCAATTTCTTCGAGACCGCGTTAA
GGAAACGCAAGAAAGCGGATACCTAGAAAGCTACCGAGCCCGAGTGCGGG
AAGGGAATAAAGCCTCCAGCAAAACAAAATTGAAGGCACTTGTGGGTGGG
GCCTTAGGAGGGGAGGGAAGACACGAAAATGAGGAATGTAAAGACGAAGA
CGAAGACGACACTGTCGAGTCCGCGGCTGCTGCTTTGGTGGCGACAGTGG
ATGGTGGCGGTGGTAGGGCGGGAGGAGGATCTGGAGCAGGGGAGGCAGCA
GCAGCGGCACCGGAAAAAGCCGAAAGCATGGTGCTGGACGAGAATTATGG
AGGCGAAGACTACTAA
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Synonyms
Publications