NO15G00430, NO15G00430 (gene) Nannochloropsis oceanica

Overview
NameNO15G00430
Unique NameNO15G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1781
Alignment locationchr15:149555..151335 -

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Properties
Property NameValue
DescriptionDolichol-phosphate mannosyltransferase subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:149555..151335 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
Vocabulary: INTERPRO
TermDefinition
IPR013174DPM3
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005783endoplasmic reticulum
Homology
BLAST of NO15G00430 vs. NCBI_GenBank
Match: EWM23529.1 (dolichol-phosphate mannosyltransferase subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 132.9 bits (333), Expect = 1.000e-27
Identity = 65/113 (57.52%), Postives = 82/113 (72.57%), Query Frame = 0
Query:   74 INMSTSPPAPPLSSSAISFPRWVGLLLCFIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFKMDY 187
            I+MS  PP+P L +     PRW+GLLL F + + VW  LY DP QSF FT PV  VL+TFP W LVSLGAY L +IG++L+ FN+CPEA V L++DIR+AKADL  KGF +D+
Sbjct:   61 ISMSRPPPSPALWAP----PRWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDIDH 169          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: XP_005854963.1 (dolichol-phosphate mannosyltransferase subunit 3-like protein [Nannochloropsis gaditana CCMP526] >EKU21403.1 dolichol-phosphate mannosyltransferase subunit 3-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 130.6 bits (327), Expect = 5.200e-27
Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = 0
Query:   76 MSTSPPAPPLSSSAISFPRWVGLLLCFIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFKMDY 187
            MS  PP P L    ++ PRW+GLLL F + + VW  LY DP QSF FT PV  VL+TFP W LVSLGAY L +IG++L+ FN+CPEA V L++DIR+AKADL +KGF  D+
Sbjct:    1 MSRPPPNPAL----LAPPRWMGLLLIFTLCTAVWFMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWEKGFDTDH 107          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: XP_024080010.1 (dolichol-phosphate mannosyltransferase subunit 3 [Terrapene mexicana triunguis])

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-9
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 0
Query:  107 TVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFK 184
            T WATL +DP        P +QVL  FP + LV+ G Y+LA IG  L  FN C  AA  L + IREA+ADL Q+G K
Sbjct:   16 TAWATLALDP-LGLHLPLPCQQVLWPFPVYLLVAFGCYSLATIGYRLATFNDCEAAAKELQEQIREARADLSQRGLK 91          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: XP_005280705.1 (dolichol-phosphate mannosyltransferase subunit 3 [Chrysemys picta bellii])

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-9
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 0
Query:  107 TVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFK 184
            T WATL +DP        P RQVL  FP + LV+ G Y+LA IG  L  FN C  AA  L + IREA+ADL ++G K
Sbjct:   16 TAWATLALDP-LGLHLPLPCRQVLWPFPVYLLVAFGCYSLATIGYRLSTFNDCEAAAKELQEQIREARADLSRRGLK 91          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: XP_007067895.1 (PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Chelonia mydas] >EMP28235.1 Dolichol-phosphate mannosyltransferase subunit 3 [Chelonia mydas])

HSP 1 Score: 71.2 bits (173), Expect = 3.700e-9
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 0
Query:  107 TVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFK 184
            T WATL +DP        P +QVL  FP + LV+ G Y+LA IG  L  FN C  AA  L + IREA+ADL ++G K
Sbjct:   16 TAWATLALDP-LGLHLPLPCQQVLWPFPVYLLVAFGCYSLATIGYRLATFNDCEAAAKELQEQIREARADLSRRGLK 91          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: KQK76083.1 (dolichol-phosphate mannosyltransferase subunit 3 [Amazona aestiva])

HSP 1 Score: 67.8 bits (164), Expect = 4.100e-8
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 0
Query:   96 VGLLLC-FIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFK 184
            +G  LC  ++  + WA L + P    R  AP RQ L   P + LV+ G Y LA +G  L  FN C EAA  L + IR A+ADL ++G +
Sbjct:    4 LGQWLCGLVLLGSAWAALALAP-PGLRLPAPFRQALLPLPVYLLVAFGCYALATVGFRLATFNDCEEAAAELREHIRAARADLARRGLR 91          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: ELA36306.1 (dolichyl-phosphate mannosyltransferase polypeptide 3 [Colletotrichum gloeosporioides Nara gc5])

HSP 1 Score: 65.1 bits (157), Expect = 2.700e-7
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 0
Query:  103 IISSTVWATLYIDPWQSFRFTAPVR-QVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFKMD 186
            ++ S+++  LY+   Q F   A V+ Q++   PFWALVS GAY LA +G N++ FN  PEA   L  +I EAKADL + G  +D
Sbjct:   12 LLVSSLYLALYL---QLFPAPAKVQEQIIPVLPFWALVSFGAYLLARLGYNVMTFNDVPEAHKELMAEIDEAKADLRKLGVDVD 92          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: XP_017663924.1 (PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Lepidothrix coronata])

HSP 1 Score: 65.1 bits (157), Expect = 2.700e-7
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 0
Query:   96 VGLLLC-FIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFKM 185
            +G  LC   +  + WA L + P       AP+RQ L   P + LV+ G Y+LA +G  L  FN C EAA  L + IR A+ADL ++G ++
Sbjct:    4 LGQWLCGLALLGSAWAALALAP-PGLELPAPLRQALLPLPVYLLVAFGCYSLATVGYRLATFNDCEEAAAELQEHIRAARADLRRRGLRL 92          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: XP_005532335.1 (PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Pseudopodoces humilis] >XP_015505507.1 PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Parus major] >XP_015505508.1 PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Parus major])

HSP 1 Score: 64.7 bits (156), Expect = 3.500e-7
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 0
Query:   96 VGLLLC-FIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFKM 185
            +G  LC   +  + WA L + P Q  +  AP+RQ L   P + LV+ G Y+LA +G  L  FN C EAA  L + IR A+ADL ++G ++
Sbjct:    4 LGQWLCGLAVLGSAWAALALAPPQ-LQPPAPLRQALLPLPVYLLVAFGCYSLATVGYRLATFNDCEEAAAELQEHIRAARADLRRRGLRL 92          
BLAST of NO15G00430 vs. NCBI_GenBank
Match: ORY46038.1 (dolichol-phosphate mannosyltransferase subunit 3 [Rhizoclosmatium globosum])

HSP 1 Score: 63.9 bits (154), Expect = 6.000e-7
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 0
Query:   95 WVGLLLCFIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFKMD 186
            WV L+L  ++   V    Y+D            ++    P W LV+ GAY+LA+IG  L+ F  CPEA + L K+I EAK DL ++G ++D
Sbjct:   19 WVLLMLHSVLIPFVPVPQYLD------------EIAPVLPLWLLVAFGAYSLASIGYALVTFGDCPEAYMSLLKEINEAKTDLKRRGVQID 97          
The following BLAST results are available for this feature:
BLAST of NO15G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM23529.11.000e-2757.52dolichol-phosphate mannosyltransferase subunit 3 [... [more]
XP_005854963.15.200e-2757.66dolichol-phosphate mannosyltransferase subunit 3-l... [more]
XP_024080010.11.300e-949.35dolichol-phosphate mannosyltransferase subunit 3 [... [more]
XP_005280705.11.700e-949.35dolichol-phosphate mannosyltransferase subunit 3 [... [more]
XP_007067895.13.700e-948.05PREDICTED: dolichol-phosphate mannosyltransferase ... [more]
KQK76083.14.100e-840.45dolichol-phosphate mannosyltransferase subunit 3 [... [more]
ELA36306.12.700e-744.05dolichyl-phosphate mannosyltransferase polypeptide... [more]
XP_017663924.12.700e-738.89PREDICTED: dolichol-phosphate mannosyltransferase ... [more]
XP_005532335.13.500e-740.00PREDICTED: dolichol-phosphate mannosyltransferase ... [more]
ORY46038.16.000e-737.36dolichol-phosphate mannosyltransferase subunit 3 [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR040ngnoR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001568NSK001568Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00430.1NO15G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587109gene_4597Nannochloropsis oceanica (N. oceanica CCMP1779)gene
dpm3gene6923Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00430.1NO15G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00430 ID=NO15G00430|Name=NO15G00430|organism=Nannochloropsis oceanica|type=gene|length=1781bp
GAGACCTTAAATACTAACGGTAGTATTTATGGCGCTGCCCTGCTCTTAAA
TAGGCAGCCCTTATATGGAAGCGCCGAATTCGCTATTTAAGGGCTAAAAA
TCCTTAAATAGCCTATTTAAGGGTTGTGGGGAGAGTTGAACACACCCCCT
ATTATGTGACTTTTTCAGCGATCGACGAGCGGTCTGGAAAACAGTGATCA
GGGGGCCGGGGTTATCAGGCCGACGAGCGGTCTGGCAAACAGTTACCAGG
CCAATTATCGCTGCCATGTCATTGAATCGTACCTACTGTGCAACCCTCTT
GGTCCCCTTATGTCGCCTCCTTGCTTCAATAACCTTCGACTCCCGAAATG
TGCAGAGCCTGGATCCCATCCACACACATCGCCAACCCCACAGACACAGG
AAAACAGCCACCATCGTCTTCACCATCAGCCGTGATCGCCCCCAGCCCCA
AAACCCAAGCGGCATCCCTCCCCGCCTGCCGAACATTAATATGTCCACGT
CTCCTCCTGCTCCCCCTTTATCTTCCTCTGCCATCTCCTTCCCACGCTGG
GTTGGCCTCCTCCTCTGTTTCATTATCTCCAGCACGGTTTGGGCCACCCT
ATACATCGACCCATGGCAGTCCTTTCGTTTCACCGCGCCCGTGCGCCAAG
TACTGCAGACGgtaagcgggaaaggaaaaatacaggagtgggcggatggg
agggaagcaagaggtgggacagagtgtgttatctggatggttctgtgcct
cgatgcatggtagtcctggtaattctctatccgagtccgccatgttaagg
aatcaagggaggaagggaggaaggaaggaagggagggagggagggaggga
gggaacaaatgtgatgtaatggatgtaggcttggggcgatggtgcaggtg
aaaagcagggtgtaatgtaatgtacgatgcatacaacagggtagctccat
ccttgcccatgtttccccctatttttatgcatacccaccatattaccctt
cccttcctccctcctcccttccattcccccttccctctccctccctcagT
TCCCGTTCTGGGCTCTGGTCTCTTTGGGAGCCTACACCCTCGCAAACATC
GGCATTAACCTCATATATTTCAATTCTTGCCCCGAGGCCGCCGTCGGGCT
GGCGAAAGACATAAGAGAAGCGAAGGCAGATTTGATCCAAAAGGGTTTCA
AAATGGATTACTAATCGATTTGAATTAGAGGGGTCAAAGAGAATATTAGA
GTGCAATTAGGAGGAAACATAGAATGTAAATGAATCAATTGAAATACTTC
CGCGGGTTTTCCCCCTTCCATCCTTTCTTCTAAGTCTCCTTTTTCTCTCC
TTCATTTTTCCTTTTTCTTTCGTCCCTCGTTGTGTGCTTTCCCCCCCCTA
TTGACTCGATGATTAGGGCTGGTTTCTTTTAATCGCTACCACTAGTCCTA
CCGCTGCTACTGCCGCCGGTCCATTTGCTCCTCTCCCTCCCACGTCCTCG
CCTCCGTCTTTCTGTTGCGAATGCCACAGGACGTTTTCGACAGGTACGTG
TGTCATGTGTATGCGTGTGAATAGATGTTTGTGTTATCTATCTGCTGATG
GCTCCATCATAAGTATGTGTGTATATGTATATTGATGCTGGTGGTATTAA
GCAAGCACTGAATAAGACGATTTTGACGATACTTCTTATACTCTTTGTGC
TTGCTCCTCCTCCTCCTTTCCCCCCTCCTTGCTCATCGCCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTTTT
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protein sequence of NO15G00430.1

>NO15G00430.1-protein ID=NO15G00430.1-protein|Name=NO15G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MSLNRTYCATLLVPLCRLLASITFDSRNVQSLDPIHTHRQPHRHRKTATI
VFTISRDRPQPQNPSGIPPRLPNINMSTSPPAPPLSSSAISFPRWVGLLL
CFIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIG
INLIYFNSCPEAAVGLAKDIREAKADLIQKGFKMDY*
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Synonyms
Publications