NO15G00430.1, NO15G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00430.1
Unique NameNO15G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1393
Alignment locationchr15:149555..151335 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:149555..151335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00430.1 vs.
Match: EWM23529.1 (dolichol-phosphate mannosyltransferase subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 132.9 bits (333), Expect = 1.000e-27
Identity = 65/113 (57.52%), Postives = 82/113 (72.57%), Query Frame = 0 
Query:   74 INMSTSPPAPPLSSSAISFPRWVGLLLCFIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIGINLIYFNSCPEAAVGLAKDIREAKADLIQKGFKMDY 187
            I+MS  PP+P L +     PRW+GLLL F + + VW  LY DP QSF FT PV  VL+TFP W LVSLGAY L +IG++L+ FN+CPEA V L++DIR+AKADL  KGF +D+
Sbjct:   61 ISMSRPPPSPALWAP----PRWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDIDH 169
The following BLAST results are available for this feature:
BLAST of NO15G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23529.11.000e-2757.52dolichol-phosphate mannosyltransferase subunit 3 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00430NO15G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00430.1NO15G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00430.1.cds1NO15G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00430.1.cds2NO15G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00430.1 ID=NO15G00430.1|Name=NO15G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp
GAGACCTTAAATACTAACGGTAGTATTTATGGCGCTGCCCTGCTCTTAAA
TAGGCAGCCCTTATATGGAAGCGCCGAATTCGCTATTTAAGGGCTAAAAA
TCCTTAAATAGCCTATTTAAGGGTTGTGGGGAGAGTTGAACACACCCCCT
ATTATGTGACTTTTTCAGCGATCGACGAGCGGTCTGGAAAACAGTGATCA
GGGGGCCGGGGTTATCAGGCCGACGAGCGGTCTGGCAAACAGTTACCAGG
CCAATTATCGCTGCCATGTCATTGAATCGTACCTACTGTGCAACCCTCTT
GGTCCCCTTATGTCGCCTCCTTGCTTCAATAACCTTCGACTCCCGAAATG
TGCAGAGCCTGGATCCCATCCACACACATCGCCAACCCCACAGACACAGG
AAAACAGCCACCATCGTCTTCACCATCAGCCGTGATCGCCCCCAGCCCCA
AAACCCAAGCGGCATCCCTCCCCGCCTGCCGAACATTAATATGTCCACGT
CTCCTCCTGCTCCCCCTTTATCTTCCTCTGCCATCTCCTTCCCACGCTGG
GTTGGCCTCCTCCTCTGTTTCATTATCTCCAGCACGGTTTGGGCCACCCT
ATACATCGACCCATGGCAGTCCTTTCGTTTCACCGCGCCCGTGCGCCAAG
TACTGCAGACGTTCCCGTTCTGGGCTCTGGTCTCTTTGGGAGCCTACACC
CTCGCAAACATCGGCATTAACCTCATATATTTCAATTCTTGCCCCGAGGC
CGCCGTCGGGCTGGCGAAAGACATAAGAGAAGCGAAGGCAGATTTGATCC
AAAAGGGTTTCAAAATGGATTACTAATCGATTTGAATTAGAGGGGTCAAA
GAGAATATTAGAGTGCAATTAGGAGGAAACATAGAATGTAAATGAATCAA
TTGAAATACTTCCGCGGGTTTTCCCCCTTCCATCCTTTCTTCTAAGTCTC
CTTTTTCTCTCCTTCATTTTTCCTTTTTCTTTCGTCCCTCGTTGTGTGCT
TTCCCCCCCCTATTGACTCGATGATTAGGGCTGGTTTCTTTTAATCGCTA
CCACTAGTCCTACCGCTGCTACTGCCGCCGGTCCATTTGCTCCTCTCCCT
CCCACGTCCTCGCCTCCGTCTTTCTGTTGCGAATGCCACAGGACGTTTTC
GACAGGTACGTGTGTCATGTGTATGCGTGTGAATAGATGTTTGTGTTATC
TATCTGCTGATGGCTCCATCATAAGTATGTGTGTATATGTATATTGATGC
TGGTGGTATTAAGCAAGCACTGAATAAGACGATTTTGACGATACTTCTTA
TACTCTTTGTGCTTGCTCCTCCTCCTCCTTTCCCCCCTCCTTGCTCATCG
CCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTT
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protein sequence of NO15G00430.1

>NO15G00430.1-protein ID=NO15G00430.1-protein|Name=NO15G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MSLNRTYCATLLVPLCRLLASITFDSRNVQSLDPIHTHRQPHRHRKTATI
VFTISRDRPQPQNPSGIPPRLPNINMSTSPPAPPLSSSAISFPRWVGLLL
CFIISSTVWATLYIDPWQSFRFTAPVRQVLQTFPFWALVSLGAYTLANIG
INLIYFNSCPEAAVGLAKDIREAKADLIQKGFKMDY*
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mRNA from alignment at chr15:149555..151335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00430.1 ID=NO15G00430.1|Name=NO15G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp|location=Sequence derived from alignment at chr15:149555..151335- (Nannochloropsis oceanica)
GAGACCTTAAATACTAACGGTAGTATTTATGGCGCTGCCCTGCTCTTAAA
TAGGCAGCCCTTATATGGAAGCGCCGAATTCGCTATTTAAGGGCTAAAAA
TCCTTAAATAGCCTATTTAAGGGTTGTGGGGAGAGTTGAACACACCCCCT
ATTATGTGACTTTTTCAGCGATCGACGAGCGGTCTGGAAAACAGTGATCA
GGGGGCCGGGGTTATCAGGCCGACGAGCGGTCTGGCAAACAGTTACCAGG
CCAATTATCGCTGCCATGTCATTGAATCGTACCTACTGTGCAACCCTCTT
GGTCCCCTTATGTCGCCTCCTTGCTTCAATAACCTTCGACTCCCGAAATG
TGCAGAGCCTGGATCCCATCCACACACATCGCCAACCCCACAGACACAGG
AAAACAGCCACCATCGTCTTCACCATCAGCCGTGATCGCCCCCAGCCCCA
AAACCCAAGCGGCATCCCTCCCCGCCTGCCGAACATTAATATGTCCACGT
CTCCTCCTGCTCCCCCTTTATCTTCCTCTGCCATCTCCTTCCCACGCTGG
GTTGGCCTCCTCCTCTGTTTCATTATCTCCAGCACGGTTTGGGCCACCCT
ATACATCGACCCATGGCAGTCCTTTCGTTTCACCGCGCCCGTGCGCCAAG
TACTGCAGACGGTAAGCGGGAAAGGAAAAATACAGGAGTGGGCGGATGGG
AGGGAAGCAAGAGGTGGGACAGAGTGTGTTATCTGGATGGTTCTGTGCCT
CGATGCATGGTAGTCCTGGTAATTCTCTATCCGAGTCCGCCATGTTAAGG
AATCAAGGGAGGAAGGGAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGA
GGGAACAAATGTGATGTAATGGATGTAGGCTTGGGGCGATGGTGCAGGTG
AAAAGCAGGGTGTAATGTAATGTACGATGCATACAACAGGGTAGCTCCAT
CCTTGCCCATGTTTCCCCCTATTTTTATGCATACCCACCATATTACCCTT
CCCTTCCTCCCTCCTCCCTTCCATTCCCCCTTCCCTCTCCCTCCCTCAGT
TCCCGTTCTGGGCTCTGGTCTCTTTGGGAGCCTACACCCTCGCAAACATC
GGCATTAACCTCATATATTTCAATTCTTGCCCCGAGGCCGCCGTCGGGCT
GGCGAAAGACATAAGAGAAGCGAAGGCAGATTTGATCCAAAAGGGTTTCA
AAATGGATTACTAATCGATTTGAATTAGAGGGGTCAAAGAGAATATTAGA
GTGCAATTAGGAGGAAACATAGAATGTAAATGAATCAATTGAAATACTTC
CGCGGGTTTTCCCCCTTCCATCCTTTCTTCTAAGTCTCCTTTTTCTCTCC
TTCATTTTTCCTTTTTCTTTCGTCCCTCGTTGTGTGCTTTCCCCCCCCTA
TTGACTCGATGATTAGGGCTGGTTTCTTTTAATCGCTACCACTAGTCCTA
CCGCTGCTACTGCCGCCGGTCCATTTGCTCCTCTCCCTCCCACGTCCTCG
CCTCCGTCTTTCTGTTGCGAATGCCACAGGACGTTTTCGACAGGTACGTG
TGTCATGTGTATGCGTGTGAATAGATGTTTGTGTTATCTATCTGCTGATG
GCTCCATCATAAGTATGTGTGTATATGTATATTGATGCTGGTGGTATTAA
GCAAGCACTGAATAAGACGATTTTGACGATACTTCTTATACTCTTTGTGC
TTGCTCCTCCTCCTCCTTTCCCCCCTCCTTGCTCATCGCCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTTTT
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Coding sequence (CDS) from alignment at chr15:149555..151335-

>NO15G00430.1 ID=NO15G00430.1|Name=NO15G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr15:149555..151335- (Nannochloropsis oceanica)
ATGTCATTGAATCGTACCTACTGTGCAACCCTCTTGGTCCCCTTATGTCG
CCTCCTTGCTTCAATAACCTTCGACTCCCGAAATGTGCAGAGCCTGGATC
CCATCCACACACATCGCCAACCCCACAGACACAGGAAAACAGCCACCATC
GTCTTCACCATCAGCCGTGATCGCCCCCAGCCCCAAAACCCAAGCGGCAT
CCCTCCCCGCCTGCCGAACATTAATATGTCCACGTCTCCTCCTGCTCCCC
CTTTATCTTCCTCTGCCATCTCCTTCCCACGCTGGGTTGGCCTCCTCCTC
TGTTTCATTATCTCCAGCACGGTTTGGGCCACCCTATACATCGACCCATG
GCAGTCCTTTCGTTTCACCGCGCCCGTGCGCCAAGTACTGCAGACGTTCC
CGTTCTGGGCTCTGGTCTCTTTGGGAGCCTACACCCTCGCAAACATCGGC
ATTAACCTCATATATTTCAATTCTTGCCCCGAGGCCGCCGTCGGGCTGGC
GAAAGACATAAGAGAAGCGAAGGCAGATTTGATCCAAAAGGGTTTCAAAA
TGGATTACTAA
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Synonyms
Publications