NO13G02750, NO13G02750 (gene) Nannochloropsis oceanica

Overview
NameNO13G02750
Unique NameNO13G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3118
Alignment locationchr13:753486..756603 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:753486..756603 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G02750 vs. NCBI_GenBank
Match: EWM21935.1 (hypothetical protein Naga_100220g11 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 6.800e-22
Identity = 95/364 (26.10%), Postives = 153/364 (42.03%), Query Frame = 0 
Query:   50 VTPLPKSLKTNSLRAEALFRHLPQSSLLSYPASSPHIDKKSFALRQLEQVGDGVHSSMYGIRTTQQREQGLRRSNRTTGDKKEEWIKIPVEASVCVEGSDPQTLDGFVYLSSENLQLYKRGGLVFFETFWKGGCYNFQVLEEQLPMLTTEHPLYVAELAKIEEMKNRKLHVISELVKLSCSNVDLEYDMEVLAIEHSHSKDLLALKFQLLETMTATGEQSPDCNPPAHLSTTDNRLFAIQQPRLIDDQKAQDQPILPKPVAGDVCVTHVFPVLGRTYQSQSHSDSCDFDEVLLPTPLPAVTTNTSSAKSVSRKRIVRNQNDKCVTGAGDSIEEMSRKQKRQKNNADEDKDGEYIHIVDFFQARL 414
            ++ L  S + N+ R+E LF+ L Q+S L      PH  K+    R L     GV  S          ++ LRRS R   DK ++WIKIPVE  +   G+  + ++G V+LSSE+ QLYK+ G    E  + G  Y + V EE LPMLT +HP Y+AE+  + + K +++   +   KL   NVD  ++ME+L                                             ++Q   + +D+  +     P P +G   + H               + CD D++           +  SAK V+        +   +TGAG+         ++ ++ +D   D EY+ I+D F  R+
Sbjct:   36 LSSLRGSFQGNTARSERLFKLLSQTSSL-----KPHGGKR----RSLNMPETGVKDSGRSDVCQSMNDKNLRRSTRCAHDKIDDWIKIPVEVPISDAGNRSELIEGSVFLSSESGQLYKKSGKACVEAAFNGSYYTYLVPEESLPMLTVDHPHYIAEVDMMNKSKEKQIEASAIFSKLLQVNVDAHHEMEMLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRSLQ---VCEDRSLRTPMYNPPPDSGACRIPH---------------ERCDLDDIKSSW---HTEMSAQSAKGVATSYYRMRDSCSSITGAGECAGNKKIGVQKLEHESDSCNDDEYVDILDIFHRRI 369
[Close]
BLAST of NO13G02750 vs. NCBI_GenBank
Match: EWM21932.1 (hypothetical protein Naga_100220g3 [Nannochloropsis gaditana])

HSP 1 Score: 105.1 bits (261), Expect = 5.400e-19
Identity = 78/274 (28.47%), Postives = 134/274 (48.91%), Query Frame = 0 
Query:  113 TQQREQG----LRRSNRTTGDKKEEWIKIPVEASVCVEGSDPQTLDGFVYLSSENLQLYKRGGLVFFETFWKGGCYNFQVLEEQLPMLTTEHPLYVAELAKIEEMKNRKLHVISELVKLSCSNVDLEYDMEVLAIEHSHSKDLLALKFQLLETMTATGEQSPDCNPPAHLSTTDNRLFAIQQPRLIDDQKAQDQPILPKPVAGDVCVTHVFPVLGRTYQSQSHSDSCDFDEVLLPTPLPAVTTNTSSAKSVSRKRIVRNQNDKCVTGAGDSIEE 383
            TQQ+       LRR+ R+TG   E+WIKIPV A+V V   D + LDG VY+S++    +++ G V+FET WKG  + + + + +LPM++ +H L+  E A+IEE + ++L     +++L C+N ++ +D+E  A +    + L + K +L E M    E          L   +  + AI    LI +  A  + +     +G    T   P   R  + +S S+  D + ++L   + A     +     +R    RN +     G  DS ++
Sbjct:  174 TQQKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAAD----RTLESRKEELRERMLGRAEDI--------LEELEEEV-AITSLPLIRESSAHHKSL---AWSGSTPATSQSPARVRARRRRSGSEFSDAETLVLEKEIKAAHKENNVPNRSTRMSSSRNLSASAEMGPSDSQQQ 431
The following BLAST results are available for this feature:
BLAST of NO13G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21935.16.800e-2226.10hypothetical protein Naga_100220g11 [Nannochlorops... [more]
EWM21932.15.400e-1928.47hypothetical protein Naga_100220g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02750.1NO13G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G02750.2NO13G02750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673832gene_9035Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02750.1NO13G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G02750.2NO13G02750.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02750 ID=NO13G02750|Name=NO13G02750|organism=Nannochloropsis oceanica|type=gene|length=3118bp
ATCCACAGCTACTTATTCTTTGCGAAAGACATTTCCATTGCGAATATCGG
TGAGACATGACTCTACCTCCTACCTGATCCCTCGCGCCAAATCAAAGGAC
GACAATGCTTCTGCTTTTTTACATACTCCTTTTCGGTACAACGGACGTTT
CAGGAGTTTAATTGAAGGTCGCGCAAACAATAAGTATCCCTTACCTTCCT
GGATTTGTAGCGTGGTTGGAAGGTCACACAGACAGCACACAGAGCGTTGC
CCTCTTGCCTGGTGCGGTGCCATCCAGTCCAGCTCGTCCCAGCGAAGGAA
CTGCTGGCTTTATATGTCTTTTTAAAGAACACAAATCTTTCATAATTGCT
TGCTTGGGATTGCCTTTTCATTTGCTGCCCTACATACAGACCAGAAGGCC
CCTTACGTCTACTTCGCTGACAGACGCCCATCAGTCCTCCCCATCCAAAC
CCACACCAAACATAATCTAGTGTCCCCGTGACGACATACATCACATCAAA
TAATTACCTGGACACGAAGGCTTCGCGGCTGTTCCCTTAAATCATAAAGA
AACAACACACTTGACTCCCTTCCAAAAACATTTCCGATATCCGCGAATAA
CCGAGCAGGCCCATCAAGTCTCAGAATGACCCGTTATAGGTAAGGGACGA
CCCTGGTTCTCAATTGTGCGGGCCATTTTTCCACCTATCCACGGGGCAAG
AATGTTCCTGACGACGCGAATAATGAAGAGTCATGTCTCATTTATAGCGC
AAGATTGGCGCGTTAGGTCTCACTTGGCGCATAATCAATACGGTGGACAG
CTTCAAGAACCTTTATGGCGCAGTGCATTAACCGGATTTGGCCCTGCACG
GTGCTATTGGCAGCATTGGATGCATGATGCTCTTTGGTTGAATAGGGCTT
GTAGCTCGAGTATGTCTCCATGCGGCGGGTATCGTTACAGGTCGGGCGAT
GACCGTCTCGCGTCAATCCACTCTGCGTACCCGTGGAAGCCGAAATGCTC
GGCAGTGTAACGTCTCACAAACGGCTTCGTGCCTTGTAATGGCATCGATG
CAGCCACTCTAATTGTGCACAGCGAGACTTTTTCTTCATATTTCTCACTC
ATCACTTTCCTTTATAGTAACCATTGGATACAAAACCTTATAGACGCTGT
CTGTGACTGGCGGGTTGTGTGCACTGGTCCCGACGGCAACTCGTCAGACA
ACGGCAAAGGCCCATTGACGTCTCATGGTGTCTGAGAAGGATCTACGGGC
ACCATCGTCTCGAGCGGCCGCGATAGCCTCAATGTTATTACGAGAACGAG
AACGCGAGGTAGCGGCAGCAGCAGCTGCTGCTGCGGCAGTGAAGCGGgtc
agtacaacgtagtagtataaatctgctatacatattatgttaatatgaca
tcgtatggtgtgcttaatgagttgaaggagaattatacacctcaaaactg
tgctactttccctatcattagGCTCGTAAGCCACCGGTGCAACATGTGAC
ACCGCTCCCAAAAAGTCTGAAGACAAACTCGCTAAGAGCGGAGGCCTTGT
TTAGACATTTGCCACAATCCTCTCTTTTAAGCTACCCCGCTTCTAGTCCT
CATATTGATAAGAAATCCTTTGCTTTACGTCAACTTGAGCAAGTCGGCGA
TGGTGTGCACTCGTCCATGgtatgtgcaacatacaatacgtctctcggtg
tcagcatttacttttttaataatcgtcaagtggtttccacagTATGGCAT
CCGCACCACACAGCAGCGTGAGCAAGGTCTGCGTCGCTCAAATCGCACCA
CCGGAGACAAGAAGGAGGAATGGATCAAAATCCCAGTCGAAGCAAGCGTT
TGTGTCGAAGGCTCTGATCCGCAAACTTTGGACGGCTTTGTCTATTTGTC
GTCGGAGAATCTTCgtaagtcttagatgtgtttccatgcacggagcggaa
attttttcactctctaacctgactacttgttatccattcatacaaacagA
ATTGTACAAGAGAGGTGGGCTGGTATTCTTTGAAACATTCTGGAAAGGGG
GCTGTTATAATTTTCAAGTACTCGAGGAGCAGTTGCCCATGCTGACAAgt
aagtgttctctgatttccccaatcgctcactttccaagcgtcactttgag
acgctatcacgcatttatgtgttaaatgacacacacagcgcccgtaactt
taaaaggaacaaaaaaaataaactatagtccataccgctcgcacgcgctt
tattccacattcttacacgaacagCCGAGCACCCTCTCTATGTCGCTGAG
CTTGCCAAGATCGAGGAAATGAAGAACCGTAAGCTTCACGTGATCTCAGA
GCTAGTAAAGCTTAGCTGCTCCAATGTGGACCTCGAATATGACATGGAAG
TTTTGGCCATCGAGCACAGCCACAGCAAGGACCTTTTGGCCCTCAAGTTT
CAGCTGTTAGAAACTATGACGGCAACGGGAGAGCAGAGTCCGGACTGCAA
TCCTCCAGCCCATCTCTCAACTACTGACAATAGGCTCTTTGCAATCCAGC
AACCACGATTGATTGATGATCAAAAAGCTCAAGATCAACCTATCCTCCCT
AAGCCAGTGGCGGGAGACGTTTGCGTAACCCACGTATTTCCGGTTCTGGG
GCGTACATACCAAAGTCAAAGCCACTCTGATTCGTGTGACTTTGACGAGG
TCCTTCTTCCCACCCCTCTTCCAGCCGTCACTACCAATACCTCCAGTGCC
AAATCTGTTAGCCGCAAGCGTATTGTTCGTAATCAGAATGATAAATGCGT
CACCGGGGCAGGCGATAGTATCGAGGAAATGAGTCGGAAGCAAAAAAGGC
AAAAAAATAATGCGGACGAGGACAAAGACGGAGAATATATACATATCGTG
GACTTTTTCCAGGCACGGTTGTTGCAAAATAGGCCTGTCGCCAAAAATAG
GTCACGACGGAATCGAGAGAAAATGAGCAGCTGAATATCCATCGTTGATT
TATACGTACACAAAAAGACAGTTGTCTTTTTGAAAACATATTCAGTATCA
TGGAGATATGAATACGGTTTTAGTTATGTATCAATGAACACAAAAAATGT
AAAAATGACATGTGGAAG
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protein sequence of NO13G02750.1

>NO13G02750.1-protein ID=NO13G02750.1-protein|Name=NO13G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MVSEKDLRAPSSRAAAIASMLLREREREVAAAAAAAAAVKRARKPPVQHV
TPLPKSLKTNSLRAEALFRHLPQSSLLSYPASSPHIDKKSFALRQLEQVG
DGVHSSMYGIRTTQQREQGLRRSNRTTGDKKEEWIKIPVEASVCVEGSDP
QTLDGFVYLSSENLQLYKRGGLVFFETFWKGGCYNFQVLEEQLPMLTTEH
PLYVAELAKIEEMKNRKLHVISELVKLSCSNVDLEYDMEVLAIEHSHSKD
LLALKFQLLETMTATGEQSPDCNPPAHLSTTDNRLFAIQQPRLIDDQKAQ
DQPILPKPVAGDVCVTHVFPVLGRTYQSQSHSDSCDFDEVLLPTPLPAVT
TNTSSAKSVSRKRIVRNQNDKCVTGAGDSIEEMSRKQKRQKNNADEDKDG
EYIHIVDFFQARLLQNRPVAKNRSRRNREKMSS*
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protein sequence of NO13G02750.2

>NO13G02750.2-protein ID=NO13G02750.2-protein|Name=NO13G02750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MVCTRPWYVQHTIRLSVSAFTFLIIVKWFPQYGIRTTQQREQGLRRSNRT
TGDKKEEWIKIPVEASVCVEGSDPQTLDGFVYLSSENLQLYKRGGLVFFE
TFWKGGCYNFQVLEEQLPMLTTEHPLYVAELAKIEEMKNRKLHVISELVK
LSCSNVDLEYDMEVLAIEHSHSKDLLALKFQLLETMTATGEQSPDCNPPA
HLSTTDNRLFAIQQPRLIDDQKAQDQPILPKPVAGDVCVTHVFPVLGRTY
QSQSHSDSCDFDEVLLPTPLPAVTTNTSSAKSVSRKRIVRNQNDKCVTGA
GDSIEEMSRKQKRQKNNADEDKDGEYIHIVDFFQARLLQNRPVAKNRSRR
NREKMSS*
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Synonyms
Publications