NO13G02750.1, NO13G02750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02750.1
Unique NameNO13G02750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2660
Alignment locationchr13:753486..756603 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:753486..756603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02750.1 vs.
Match: EWM21935.1 (hypothetical protein Naga_100220g11 [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 5.200e-30
Identity = 105/364 (28.85%), Postives = 170/364 (46.70%), Query Frame = 0 
Query:   50 VTPLPKSLKTNSLRAEALFRHLPQSSLLSYPASSPHIDKKSFALRQLEQVGDGVHSSMYGIRTTQQREQGLRRSNRTTGDKKEEWIKIPVEASVCVEGSDPQTLDGFVYLSSENLQLYKRGGLVFFETFWKGGCYNFQVLEEQLPMLTTEHPLYVAELAKIEEMKNRKLHVISELVKLSCSNVDLEYDMEVLAIEHSHSKDLLALKFQLLETMTATGEQSPDCNPPAHLSTTDNRLFAIQQPRLIDDQKAQDQPILPKPVAGDVCVTHVFPVLGRTYQSQSHSDSCDFDEVLLPTPLPAVTTNTSSAKSVSRKRIVRNQNDKCVTGAGDSIEEMSRKQKRQKNNADEDKDGEYIHIVDFFQARL 414
            ++ L  S + N+ R+E LF+ L Q+S L      PH  K+    R L     GV  S          ++ LRRS R   DK ++WIKIPVE  +   G+  + ++G V+LSSE+ QLYK+ G    E  + G  Y + V EE LPMLT +HP Y+AE+  + + K +++   +   KL   NVD  ++ME+L +E  + ++LL LK Q   +  A  +   D     H S    R  + +  ++ +D+  +     P P +G   + H               + CD D++           +  SAK V+        +   +TGAG+         ++ ++ +D   D EY+ I+D F  R+
Sbjct:   36 LSSLRGSFQGNTARSERLFKLLSQTSSLK-----PHGGKR----RSLNMPETGVKDSGRSDVCQSMNDKNLRRSTRCAHDKIDDWIKIPVEVPISDAGNRSELIEGSVFLSSESGQLYKKSGKACVEAAFNGSYYTYLVPEESLPMLTVDHPHYIAEVDMMNKSKEKQIEASAIFSKLLQVNVDAHHEMEMLMLEKEYERELLTLKNQ---SQDAILQVMKDVQDLGHESIAVTRNVSNRSLQVCEDRSLRTPMYNPPPDSGACRIPH---------------ERCDLDDIKSSW---HTEMSAQSAKGVATSYYRMRDSCSSITGAGECAGNKKIGVQKLEHESDSCNDDEYVDILDIFHRRI 369
The following BLAST results are available for this feature:
BLAST of NO13G02750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21935.15.200e-3028.85hypothetical protein Naga_100220g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02750NO13G02750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02750.1NO13G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02750.1.cds1NO13G02750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02750.1.cds2NO13G02750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02750.1.cds3NO13G02750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02750.1.cds4NO13G02750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02750.1.cds5NO13G02750.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02750.1 ID=NO13G02750.1|Name=NO13G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2660bp
ATCCACAGCTACTTATTCTTTGCGAAAGACATTTCCATTGCGAATATCGG
TGAGACATGACTCTACCTCCTACCTGATCCCTCGCGCCAAATCAAAGGAC
GACAATGCTTCTGCTTTTTTACATACTCCTTTTCGGTACAACGGACGTTT
CAGGAGTTTAATTGAAGGTCGCGCAAACAATAAGTATCCCTTACCTTCCT
GGATTTGTAGCGTGGTTGGAAGGTCACACAGACAGCACACAGAGCGTTGC
CCTCTTGCCTGGTGCGGTGCCATCCAGTCCAGCTCGTCCCAGCGAAGGAA
CTGCTGGCTTTATATGTCTTTTTAAAGAACACAAATCTTTCATAATTGCT
TGCTTGGGATTGCCTTTTCATTTGCTGCCCTACATACAGACCAGAAGGCC
CCTTACGTCTACTTCGCTGACAGACGCCCATCAGTCCTCCCCATCCAAAC
CCACACCAAACATAATCTAGTGTCCCCGTGACGACATACATCACATCAAA
TAATTACCTGGACACGAAGGCTTCGCGGCTGTTCCCTTAAATCATAAAGA
AACAACACACTTGACTCCCTTCCAAAAACATTTCCGATATCCGCGAATAA
CCGAGCAGGCCCATCAAGTCTCAGAATGACCCGTTATAGGTAAGGGACGA
CCCTGGTTCTCAATTGTGCGGGCCATTTTTCCACCTATCCACGGGGCAAG
AATGTTCCTGACGACGCGAATAATGAAGAGTCATGTCTCATTTATAGCGC
AAGATTGGCGCGTTAGGTCTCACTTGGCGCATAATCAATACGGTGGACAG
CTTCAAGAACCTTTATGGCGCAGTGCATTAACCGGATTTGGCCCTGCACG
GTGCTATTGGCAGCATTGGATGCATGATGCTCTTTGGTTGAATAGGGCTT
GTAGCTCGAGTATGTCTCCATGCGGCGGGTATCGTTACAGGTCGGGCGAT
GACCGTCTCGCGTCAATCCACTCTGCGTACCCGTGGAAGCCGAAATGCTC
GGCAGTGTAACGTCTCACAAACGGCTTCGTGCCTTGTAATGGCATCGATG
CAGCCACTCTAATTGTGCACAGCGAGACTTTTTCTTCATATTTCTCACTC
ATCACTTTCCTTTATAGTAACCATTGGATACAAAACCTTATAGACGCTGT
CTGTGACTGGCGGGTTGTGTGCACTGGTCCCGACGGCAACTCGTCAGACA
ACGGCAAAGGCCCATTGACGTCTCATGGTGTCTGAGAAGGATCTACGGGC
ACCATCGTCTCGAGCGGCCGCGATAGCCTCAATGTTATTACGAGAACGAG
AACGCGAGGTAGCGGCAGCAGCAGCTGCTGCTGCGGCAGTGAAGCGGGCT
CGTAAGCCACCGGTGCAACATGTGACACCGCTCCCAAAAAGTCTGAAGAC
AAACTCGCTAAGAGCGGAGGCCTTGTTTAGACATTTGCCACAATCCTCTC
TTTTAAGCTACCCCGCTTCTAGTCCTCATATTGATAAGAAATCCTTTGCT
TTACGTCAACTTGAGCAAGTCGGCGATGGTGTGCACTCGTCCATGTATGG
CATCCGCACCACACAGCAGCGTGAGCAAGGTCTGCGTCGCTCAAATCGCA
CCACCGGAGACAAGAAGGAGGAATGGATCAAAATCCCAGTCGAAGCAAGC
GTTTGTGTCGAAGGCTCTGATCCGCAAACTTTGGACGGCTTTGTCTATTT
GTCGTCGGAGAATCTTCAATTGTACAAGAGAGGTGGGCTGGTATTCTTTG
AAACATTCTGGAAAGGGGGCTGTTATAATTTTCAAGTACTCGAGGAGCAG
TTGCCCATGCTGACAACCGAGCACCCTCTCTATGTCGCTGAGCTTGCCAA
GATCGAGGAAATGAAGAACCGTAAGCTTCACGTGATCTCAGAGCTAGTAA
AGCTTAGCTGCTCCAATGTGGACCTCGAATATGACATGGAAGTTTTGGCC
ATCGAGCACAGCCACAGCAAGGACCTTTTGGCCCTCAAGTTTCAGCTGTT
AGAAACTATGACGGCAACGGGAGAGCAGAGTCCGGACTGCAATCCTCCAG
CCCATCTCTCAACTACTGACAATAGGCTCTTTGCAATCCAGCAACCACGA
TTGATTGATGATCAAAAAGCTCAAGATCAACCTATCCTCCCTAAGCCAGT
GGCGGGAGACGTTTGCGTAACCCACGTATTTCCGGTTCTGGGGCGTACAT
ACCAAAGTCAAAGCCACTCTGATTCGTGTGACTTTGACGAGGTCCTTCTT
CCCACCCCTCTTCCAGCCGTCACTACCAATACCTCCAGTGCCAAATCTGT
TAGCCGCAAGCGTATTGTTCGTAATCAGAATGATAAATGCGTCACCGGGG
CAGGCGATAGTATCGAGGAAATGAGTCGGAAGCAAAAAAGGCAAAAAAAT
AATGCGGACGAGGACAAAGACGGAGAATATATACATATCGTGGACTTTTT
CCAGGCACGGTTGTTGCAAAATAGGCCTGTCGCCAAAAATAGGTCACGAC
GGAATCGAGAGAAAATGAGCAGCTGAATATCCATCGTTGATTTATACGTA
CACAAAAAGACAGTTGTCTTTTTGAAAACATATTCAGTATCATGGAGATA
TGAATACGGTTTTAGTTATGTATCAATGAACACAAAAAATGTAAAAATGA
CATGTGGAAG
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protein sequence of NO13G02750.1

>NO13G02750.1-protein ID=NO13G02750.1-protein|Name=NO13G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MVSEKDLRAPSSRAAAIASMLLREREREVAAAAAAAAAVKRARKPPVQHV
TPLPKSLKTNSLRAEALFRHLPQSSLLSYPASSPHIDKKSFALRQLEQVG
DGVHSSMYGIRTTQQREQGLRRSNRTTGDKKEEWIKIPVEASVCVEGSDP
QTLDGFVYLSSENLQLYKRGGLVFFETFWKGGCYNFQVLEEQLPMLTTEH
PLYVAELAKIEEMKNRKLHVISELVKLSCSNVDLEYDMEVLAIEHSHSKD
LLALKFQLLETMTATGEQSPDCNPPAHLSTTDNRLFAIQQPRLIDDQKAQ
DQPILPKPVAGDVCVTHVFPVLGRTYQSQSHSDSCDFDEVLLPTPLPAVT
TNTSSAKSVSRKRIVRNQNDKCVTGAGDSIEEMSRKQKRQKNNADEDKDG
EYIHIVDFFQARLLQNRPVAKNRSRRNREKMSS*
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mRNA from alignment at chr13:753486..756603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02750.1 ID=NO13G02750.1|Name=NO13G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=3118bp|location=Sequence derived from alignment at chr13:753486..756603+ (Nannochloropsis oceanica)
ATCCACAGCTACTTATTCTTTGCGAAAGACATTTCCATTGCGAATATCGG
TGAGACATGACTCTACCTCCTACCTGATCCCTCGCGCCAAATCAAAGGAC
GACAATGCTTCTGCTTTTTTACATACTCCTTTTCGGTACAACGGACGTTT
CAGGAGTTTAATTGAAGGTCGCGCAAACAATAAGTATCCCTTACCTTCCT
GGATTTGTAGCGTGGTTGGAAGGTCACACAGACAGCACACAGAGCGTTGC
CCTCTTGCCTGGTGCGGTGCCATCCAGTCCAGCTCGTCCCAGCGAAGGAA
CTGCTGGCTTTATATGTCTTTTTAAAGAACACAAATCTTTCATAATTGCT
TGCTTGGGATTGCCTTTTCATTTGCTGCCCTACATACAGACCAGAAGGCC
CCTTACGTCTACTTCGCTGACAGACGCCCATCAGTCCTCCCCATCCAAAC
CCACACCAAACATAATCTAGTGTCCCCGTGACGACATACATCACATCAAA
TAATTACCTGGACACGAAGGCTTCGCGGCTGTTCCCTTAAATCATAAAGA
AACAACACACTTGACTCCCTTCCAAAAACATTTCCGATATCCGCGAATAA
CCGAGCAGGCCCATCAAGTCTCAGAATGACCCGTTATAGGTAAGGGACGA
CCCTGGTTCTCAATTGTGCGGGCCATTTTTCCACCTATCCACGGGGCAAG
AATGTTCCTGACGACGCGAATAATGAAGAGTCATGTCTCATTTATAGCGC
AAGATTGGCGCGTTAGGTCTCACTTGGCGCATAATCAATACGGTGGACAG
CTTCAAGAACCTTTATGGCGCAGTGCATTAACCGGATTTGGCCCTGCACG
GTGCTATTGGCAGCATTGGATGCATGATGCTCTTTGGTTGAATAGGGCTT
GTAGCTCGAGTATGTCTCCATGCGGCGGGTATCGTTACAGGTCGGGCGAT
GACCGTCTCGCGTCAATCCACTCTGCGTACCCGTGGAAGCCGAAATGCTC
GGCAGTGTAACGTCTCACAAACGGCTTCGTGCCTTGTAATGGCATCGATG
CAGCCACTCTAATTGTGCACAGCGAGACTTTTTCTTCATATTTCTCACTC
ATCACTTTCCTTTATAGTAACCATTGGATACAAAACCTTATAGACGCTGT
CTGTGACTGGCGGGTTGTGTGCACTGGTCCCGACGGCAACTCGTCAGACA
ACGGCAAAGGCCCATTGACGTCTCATGGTGTCTGAGAAGGATCTACGGGC
ACCATCGTCTCGAGCGGCCGCGATAGCCTCAATGTTATTACGAGAACGAG
AACGCGAGGTAGCGGCAGCAGCAGCTGCTGCTGCGGCAGTGAAGCGGGTC
AGTACAACGTAGTAGTATAAATCTGCTATACATATTATGTTAATATGACA
TCGTATGGTGTGCTTAATGAGTTGAAGGAGAATTATACACCTCAAAACTG
TGCTACTTTCCCTATCATTAGGCTCGTAAGCCACCGGTGCAACATGTGAC
ACCGCTCCCAAAAAGTCTGAAGACAAACTCGCTAAGAGCGGAGGCCTTGT
TTAGACATTTGCCACAATCCTCTCTTTTAAGCTACCCCGCTTCTAGTCCT
CATATTGATAAGAAATCCTTTGCTTTACGTCAACTTGAGCAAGTCGGCGA
TGGTGTGCACTCGTCCATGGTATGTGCAACATACAATACGTCTCTCGGTG
TCAGCATTTACTTTTTTAATAATCGTCAAGTGGTTTCCACAGTATGGCAT
CCGCACCACACAGCAGCGTGAGCAAGGTCTGCGTCGCTCAAATCGCACCA
CCGGAGACAAGAAGGAGGAATGGATCAAAATCCCAGTCGAAGCAAGCGTT
TGTGTCGAAGGCTCTGATCCGCAAACTTTGGACGGCTTTGTCTATTTGTC
GTCGGAGAATCTTCGTAAGTCTTAGATGTGTTTCCATGCACGGAGCGGAA
ATTTTTTCACTCTCTAACCTGACTACTTGTTATCCATTCATACAAACAGA
ATTGTACAAGAGAGGTGGGCTGGTATTCTTTGAAACATTCTGGAAAGGGG
GCTGTTATAATTTTCAAGTACTCGAGGAGCAGTTGCCCATGCTGACAAGT
AAGTGTTCTCTGATTTCCCCAATCGCTCACTTTCCAAGCGTCACTTTGAG
ACGCTATCACGCATTTATGTGTTAAATGACACACACAGCGCCCGTAACTT
TAAAAGGAACAAAAAAAATAAACTATAGTCCATACCGCTCGCACGCGCTT
TATTCCACATTCTTACACGAACAGCCGAGCACCCTCTCTATGTCGCTGAG
CTTGCCAAGATCGAGGAAATGAAGAACCGTAAGCTTCACGTGATCTCAGA
GCTAGTAAAGCTTAGCTGCTCCAATGTGGACCTCGAATATGACATGGAAG
TTTTGGCCATCGAGCACAGCCACAGCAAGGACCTTTTGGCCCTCAAGTTT
CAGCTGTTAGAAACTATGACGGCAACGGGAGAGCAGAGTCCGGACTGCAA
TCCTCCAGCCCATCTCTCAACTACTGACAATAGGCTCTTTGCAATCCAGC
AACCACGATTGATTGATGATCAAAAAGCTCAAGATCAACCTATCCTCCCT
AAGCCAGTGGCGGGAGACGTTTGCGTAACCCACGTATTTCCGGTTCTGGG
GCGTACATACCAAAGTCAAAGCCACTCTGATTCGTGTGACTTTGACGAGG
TCCTTCTTCCCACCCCTCTTCCAGCCGTCACTACCAATACCTCCAGTGCC
AAATCTGTTAGCCGCAAGCGTATTGTTCGTAATCAGAATGATAAATGCGT
CACCGGGGCAGGCGATAGTATCGAGGAAATGAGTCGGAAGCAAAAAAGGC
AAAAAAATAATGCGGACGAGGACAAAGACGGAGAATATATACATATCGTG
GACTTTTTCCAGGCACGGTTGTTGCAAAATAGGCCTGTCGCCAAAAATAG
GTCACGACGGAATCGAGAGAAAATGAGCAGCTGAATATCCATCGTTGATT
TATACGTACACAAAAAGACAGTTGTCTTTTTGAAAACATATTCAGTATCA
TGGAGATATGAATACGGTTTTAGTTATGTATCAATGAACACAAAAAATGT
AAAAATGACATGTGGAAG
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Coding sequence (CDS) from alignment at chr13:753486..756603+

>NO13G02750.1 ID=NO13G02750.1|Name=NO13G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr13:753486..756603+ (Nannochloropsis oceanica)
ATGGTGTCTGAGAAGGATCTACGGGCACCATCGTCTCGAGCGGCCGCGAT
AGCCTCAATGTTATTACGAGAACGAGAACGCGAGGTAGCGGCAGCAGCAG
CTGCTGCTGCGGCAGTGAAGCGGGCTCGTAAGCCACCGGTGCAACATGTG
ACACCGCTCCCAAAAAGTCTGAAGACAAACTCGCTAAGAGCGGAGGCCTT
GTTTAGACATTTGCCACAATCCTCTCTTTTAAGCTACCCCGCTTCTAGTC
CTCATATTGATAAGAAATCCTTTGCTTTACGTCAACTTGAGCAAGTCGGC
GATGGTGTGCACTCGTCCATGTATGGCATCCGCACCACACAGCAGCGTGA
GCAAGGTCTGCGTCGCTCAAATCGCACCACCGGAGACAAGAAGGAGGAAT
GGATCAAAATCCCAGTCGAAGCAAGCGTTTGTGTCGAAGGCTCTGATCCG
CAAACTTTGGACGGCTTTGTCTATTTGTCGTCGGAGAATCTTCAATTGTA
CAAGAGAGGTGGGCTGGTATTCTTTGAAACATTCTGGAAAGGGGGCTGTT
ATAATTTTCAAGTACTCGAGGAGCAGTTGCCCATGCTGACAACCGAGCAC
CCTCTCTATGTCGCTGAGCTTGCCAAGATCGAGGAAATGAAGAACCGTAA
GCTTCACGTGATCTCAGAGCTAGTAAAGCTTAGCTGCTCCAATGTGGACC
TCGAATATGACATGGAAGTTTTGGCCATCGAGCACAGCCACAGCAAGGAC
CTTTTGGCCCTCAAGTTTCAGCTGTTAGAAACTATGACGGCAACGGGAGA
GCAGAGTCCGGACTGCAATCCTCCAGCCCATCTCTCAACTACTGACAATA
GGCTCTTTGCAATCCAGCAACCACGATTGATTGATGATCAAAAAGCTCAA
GATCAACCTATCCTCCCTAAGCCAGTGGCGGGAGACGTTTGCGTAACCCA
CGTATTTCCGGTTCTGGGGCGTACATACCAAAGTCAAAGCCACTCTGATT
CGTGTGACTTTGACGAGGTCCTTCTTCCCACCCCTCTTCCAGCCGTCACT
ACCAATACCTCCAGTGCCAAATCTGTTAGCCGCAAGCGTATTGTTCGTAA
TCAGAATGATAAATGCGTCACCGGGGCAGGCGATAGTATCGAGGAAATGA
GTCGGAAGCAAAAAAGGCAAAAAAATAATGCGGACGAGGACAAAGACGGA
GAATATATACATATCGTGGACTTTTTCCAGGCACGGTTGTTGCAAAATAG
GCCTGTCGCCAAAAATAGGTCACGACGGAATCGAGAGAAAATGAGCAGCT
GA
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Synonyms
Publications