NO12G02950, NO12G02950 (gene) Nannochloropsis oceanica

Overview
NameNO12G02950
Unique NameNO12G02950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2685
Alignment locationchr12:813682..816366 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:813682..816366 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO12G02950 vs. NCBI_GenBank
Match: EWM25736.1 (hypothetical protein Naga_100087g21 [Nannochloropsis gaditana])

HSP 1 Score: 290.0 bits (741), Expect = 6.900e-75
Identity = 150/252 (59.52%), Postives = 191/252 (75.79%), Query Frame = 0 
Query:    1 MTCFFKGLGFGLTLAPVILMIMSLLSQDWTLNTTSLIDISPKAEIYEDTIDFRMGPFKTFMEAVQEETVVFSYTSYSDWCSPSASSFDNPSAHHLCRLLHSVRATGVVTAILGGVTFLLYCILAFRSLKGQYIAKTARVSMVLHIVQAGCAFATVGLWMALTKAYHSSLTSALDPEFASFRLPYGRSFYRVVVVGILALVSAAALHIMAAKSVGAIEKQATIERKRSEFELREAAESARRQAEQELRAENMI 253
            MTCFF+ LG G+T+APV+LM+  LL++DWT  T SL+ I   AEIYED IDF MGPF+TFME  Q +  VFS  +Y  WC+  AS+  + +   LC LL  V+AT V+  I GG+ FLLYC+LAFRSLKG+Y+A+TARV+M LHI QA  AF ++GLW+AL + Y SSL S+L P FA F LP+GRSFYRVV+VGILALV+A  LH MA +SV AI+K+ TI RKRSEFE++EAAE+AR QAE+EL+ E ++
Sbjct:   23 MTCFFRFLGLGMTIAPVVLMLTCLLAKDWTSTTASLVKIDSHAEIYEDDIDFHMGPFRTFMEVTQGDEEVFSKNTY-PWCTQDASTLSHSADRRLCSLLQGVQATSVLAVITGGIAFLLYCMLAFRSLKGEYVARTARVAMSLHIAQAVLAFLSLGLWLALMRVYQSSLQSSLGPNFADFSLPHGRSFYRVVIVGILALVAAGGLHTMAGRSVSAIQKRETIARKRSEFEMKEAAEAARMQAEEELKVEQLV 273
The following BLAST results are available for this feature:
BLAST of NO12G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25736.16.900e-7559.52hypothetical protein Naga_100087g21 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010241NSK010241Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02950.1NO12G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G02950.2NO12G02950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592619gene_5469Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100087g21gene4772Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02950.1NO12G02950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G02950.2NO12G02950.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02950 ID=NO12G02950|Name=NO12G02950|organism=Nannochloropsis oceanica|type=gene|length=2685bp
GCTGCAGCTAATTTTGGTGCTGCTCGTATCGGTCAAGGCCAAGTTGTCCA
GCCTACTCGTCACGTCCTCGTGTGCCCTCCGCAATTCCGTCCAAAAGACG
CCAACAGATTCCGCAGGGTCTTTGCCGAGCTGAACCTTGGCCCTGCTGTC
CTTTCGGGATTGCATCCGTGCTTCTTGTTGGGCTCGAAAGCGGGCTTGCA
TTTCAGTATGGCGTGTCGATGGCTCCGGGGTAGGAGGCGGCAGTGGAGTC
TTGATGGGAGGTTCCATTTTTTAAGCCACCGCGGAGAGATACTTGCCTGT
CTGTTTGTGTAGGATACAAGTTATCAGAGGGCCTGTCCTATAGGACCGTG
GATTGTAGGGGTTGCACTGTTCTCGCCCAAAACCTTACTGCTTTCAGAAT
CCCGAAGTCTGCGAATGGGCGACAAGGAACAAAATGAGTTGATTTGCAAA
AGAACAGTCCCCGGCTTGGACCAGTTTTTGCGAGGTGTGCCGGTGTATCC
ACGTGTCTTTGTAGCGCTTGCATGGGCATGGGCTTGGAGTGAGGACATTG
TTAATAAACAATGTGGTCTCATTGACAGCGCACTGCACAATCTAGACTCC
CAACCAACTCTCATCCAACCTACCAGGTGCAACAACTTTATTTCTCCAGA
CAATTCGCTTCTATGCACAGTTCTTCATCCAGCCCCCGACGGCATCGCAC
ACGACAATGCCGACCGAAGAATAGGATCCCTGTGTCTAGAGCTGTTTCAG
GACATGCGAGGTGCTATAATTTGCCTGGTTGTGGAGCCAACATGTCCACG
ACTGTTTGTTTCCCCGCTCCTGGCTCACCACCATAACCAGGATCAGATCC
TGTTTCGATGGCATGCTTTGCGCTGTGATGGCATCCACGCCATTCATTCA
AGCGCATGTCTGCACAACTCTGACTCCCCTGTGTACTACACGGTATACAA
ACAACAGGCGCTTGTCTACCGAAAAGCCCTCACTCATTCATCATGACGTG
CTTTTTCAAGGGACTCGGTACGTGCACTGAGAGTAGAGCATTATAGAGTG
GGAGAGAGAATTTATATGGAGTCGGTACTCGTACTTGTAAATGTGCCATA
TCAGTATGCGCATGAATAAGTCGTCATGTACATGTGGAGCGGTGTCTCAT
AACATTTTCCCCATTCAAGCTTTATGCTTATCTATCTCCGCCCCTCCTCT
AACCTCCTCATTTCCCGAATCACGCAGGCTTCGGCCTGACCCTCGCCCCC
GTGATTCTCATGATCATGTCCCTGCTGAGCCAAGgtatgtcttaattggt
tgcaattttttttctgttaaagccatgctgttggatgatatccctgacct
tggtctgtcccctttccaactcctgaccactttaccatccatggcgtata
tggcactccccccccccccggtgtagctcccaactttttctgctttccac
tctttttgatgtttatcgtctctcctgtcactccacttctttccttcctc
tctccttcctttctagATTGGACGTTGAACACGACGAGCCTGATCGATAT
TAGCCCCAAAGCCGAGATCTACGAGGACACGATCGACTTCCGTATGGGCC
CCTTTAAAACATTCATGGAGGCCGTGCAAGAAGAGACTGTGGTTTTCAGC
TACACCTCATACTCGGACTGGTGCTCCCCCTCGGCCTCGTCTTTCGACAA
CCCCTCCGCGCACCACCTCTGTCGCCTGCTGCACAGCGTGCGGGCCACGG
GGGTTGTAACCGCCATCCTTGGGGGGGTCACTTTCTTGCTATACTGTATC
CTTGCCTTCCGATCTCTCAAGGGGCAGTATATTGCCAAGACTGCGCGTGT
CAGCATGGTTTTACACATCGTCCAAGCGGGGTGTGCCTTCGCTACCGTGG
GGTTGTGGATGGCGTTAACGAAAGCCTACCACTCCTCCCTCACCTCGGCC
TTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGTATGGCAGGTCATTCTA
TCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTATCAGCTGCGGCATTGC
ACATCATGGCGGCCAAGAGCGTCGGTGCAATTGAGAAGCAAGCAACGATT
GAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGGCGGCGGAGTCGGCTCG
GAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAATATGATTTAGGTTTAGA
AGCGAGGTGGGATGGGAGGGAGGGAAGGGAGGGGGGAAGGGAGGGGGAAG
GGAAGGGAAGGGGAAAATGGGCATGCGTAAATTTTCCGTTTCACATCCTC
AGATGCTTGCTTTAATTTGGGACTTTTTTTTAGGGGGGGACGGGGGGAGG
ATCTGGGGACGGAATGGCGGGAGATAGGTATGACGTATGACTAGCGGAGG
TGTGCATCTGTTCATTTTGACTGTCTGCAGGAGTTTTGTTTGAAGCAAGG
CACAAATGAGAGGAGCGGCTTCGGTGTTTGCTTCCTCTGTGTGCACTTAA
AGAGAATAAAGGTAGGGGAAGGAAGAGAGCAAGAAGTGTTTGCATCAGCA
ACCAAGATCAACCAACATGGGATCTTTGACAGGGCAGTAGATACTGTAAT
ACATGTCAAACATGGGGAAGAAGGAAAAGCGAGCAGGAAGAGGCAAATAG
TACCAAAGAACGAATAATGTGGTGTGTGTGTGAGT
back to top

protein sequence of NO12G02950.1

>NO12G02950.1-protein ID=NO12G02950.1-protein|Name=NO12G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MTCFFKGLGFGLTLAPVILMIMSLLSQDWTLNTTSLIDISPKAEIYEDTI
DFRMGPFKTFMEAVQEETVVFSYTSYSDWCSPSASSFDNPSAHHLCRLLH
SVRATGVVTAILGGVTFLLYCILAFRSLKGQYIAKTARVSMVLHIVQAGC
AFATVGLWMALTKAYHSSLTSALDPEFASFRLPYGRSFYRVVVVGILALV
SAAALHIMAAKSVGAIEKQATIERKRSEFELREAAESARRQAEQELRAEN
MI*
back to top

protein sequence of NO12G02950.2

>NO12G02950.2-protein ID=NO12G02950.2-protein|Name=NO12G02950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MIMSLLSQDWTLNTTSLIDISPKAEIYEDTIDFRMGPFKTFMEAVQEETV
VFSYTSYSDWCSPSASSFDNPSAHHLCRLLHSVRATGVVTAILGGVTFLL
YCILAFRSLKGQYIAKTARVSMVLHIVQAGCAFATVGLWMALTKAYHSSL
TSALDPEFASFRLPYGRSFYRVVVVGILALVSAAALHIMAAKSVGAIEKQ
ATIERKRSEFELREAAESARRQAEQELRAENMI*
back to top
Synonyms
Publications