NO12G02950.1, NO12G02950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02950.1
Unique NameNO12G02950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2243
Alignment locationchr12:813682..816366 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:813682..816366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02950.1 vs.
Match: EWM25736.1 (hypothetical protein Naga_100087g21 [Nannochloropsis gaditana])

HSP 1 Score: 289.7 bits (740), Expect = 9.000e-75
Identity = 150/252 (59.52%), Postives = 191/252 (75.79%), Query Frame = 0 
Query:    1 MTCFFKGLGFGLTLAPVILMIMSLLSQDWTLNTTSLIDISPKAEIYEDTIDFRMGPFKTFMEAVQEETVVFSYTSYSDWCSPSASSFDNPSAHHLCRLLHSVRATGVVTAILGGVTFLLYCILAFRSLKGQYIAKTARVSMVLHIVQAGCAFATVGLWMALTKAYHSSLTSALDPEFASFRLPYGRSFYRVVVVGILALVSAAALHIMAAKSVGAIEKQATIERKRSEFELREAAESARRQAEQELRAENMI 253
            MTCFF+ LG G+T+APV+LM+  LL++DWT  T SL+ I   AEIYED IDF MGPF+TFME  Q +  VFS  +Y  WC+  AS+  + +   LC LL  V+AT V+  I GG+ FLLYC+LAFRSLKG+Y+A+TARV+M LHI QA  AF ++GLW+AL + Y SSL S+L P FA F LP+GRSFYRVV+VGILALV+A  LH MA +SV AI+K+ TI RKRSEFE++EAAE+AR QAE+EL+ E ++
Sbjct:   23 MTCFFRFLGLGMTIAPVVLMLTCLLAKDWTSTTASLVKIDSHAEIYEDDIDFHMGPFRTFMEVTQGDEEVFSKNTYP-WCTQDASTLSHSADRRLCSLLQGVQATSVLAVITGGIAFLLYCMLAFRSLKGEYVARTARVAMSLHIAQAVLAFLSLGLWLALMRVYQSSLQSSLGPNFADFSLPHGRSFYRVVIVGILALVAAGGLHTMAGRSVSAIQKRETIARKRSEFEMKEAAEAARMQAEEELKVEQLV 273
The following BLAST results are available for this feature:
BLAST of NO12G02950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25736.19.000e-7559.52hypothetical protein Naga_100087g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02950NO12G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02950.1NO12G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02950.1.cds1NO12G02950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02950.1.cds2NO12G02950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02950.1.cds3NO12G02950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02950.1 ID=NO12G02950.1|Name=NO12G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2243bp
GCTGCAGCTAATTTTGGTGCTGCTCGTATCGGTCAAGGCCAAGTTGTCCA
GCCTACTCGTCACGTCCTCGTGTGCCCTCCGCAATTCCGTCCAAAAGACG
CCAACAGATTCCGCAGGGTCTTTGCCGAGCTGAACCTTGGCCCTGCTGTC
CTTTCGGGATTGCATCCGTGCTTCTTGTTGGGCTCGAAAGCGGGCTTGCA
TTTCAGTATGGCGTGTCGATGGCTCCGGGGTAGGAGGCGGCAGTGGAGTC
TTGATGGGAGGTTCCATTTTTTAAGCCACCGCGGAGAGATACTTGCCTGT
CTGTTTGTGTAGGATACAAGTTATCAGAGGGCCTGTCCTATAGGACCGTG
GATTGTAGGGGTTGCACTGTTCTCGCCCAAAACCTTACTGCTTTCAGAAT
CCCGAAGTCTGCGAATGGGCGACAAGGAACAAAATGAGTTGATTTGCAAA
AGAACAGTCCCCGGCTTGGACCAGTTTTTGCGAGGTGTGCCGGTGTATCC
ACGTGTCTTTGTAGCGCTTGCATGGGCATGGGCTTGGAGTGAGGACATTG
TTAATAAACAATGTGGTCTCATTGACAGCGCACTGCACAATCTAGACTCC
CAACCAACTCTCATCCAACCTACCAGGTGCAACAACTTTATTTCTCCAGA
CAATTCGCTTCTATGCACAGTTCTTCATCCAGCCCCCGACGGCATCGCAC
ACGACAATGCCGACCGAAGAATAGGATCCCTGTGTCTAGAGCTGTTTCAG
GACATGCGAGGTGCTATAATTTGCCTGGTTGTGGAGCCAACATGTCCACG
ACTGTTTGTTTCCCCGCTCCTGGCTCACCACCATAACCAGGATCAGATCC
TGTTTCGATGGCATGCTTTGCGCTGTGATGGCATCCACGCCATTCATTCA
AGCGCATGTCTGCACAACTCTGACTCCCCTGTGTACTACACGGTATACAA
ACAACAGGCGCTTGTCTACCGAAAAGCCCTCACTCATTCATCATGACGTG
CTTTTTCAAGGGACTCGGCTTCGGCCTGACCCTCGCCCCCGTGATTCTCA
TGATCATGTCCCTGCTGAGCCAAGATTGGACGTTGAACACGACGAGCCTG
ATCGATATTAGCCCCAAAGCCGAGATCTACGAGGACACGATCGACTTCCG
TATGGGCCCCTTTAAAACATTCATGGAGGCCGTGCAAGAAGAGACTGTGG
TTTTCAGCTACACCTCATACTCGGACTGGTGCTCCCCCTCGGCCTCGTCT
TTCGACAACCCCTCCGCGCACCACCTCTGTCGCCTGCTGCACAGCGTGCG
GGCCACGGGGGTTGTAACCGCCATCCTTGGGGGGGTCACTTTCTTGCTAT
ACTGTATCCTTGCCTTCCGATCTCTCAAGGGGCAGTATATTGCCAAGACT
GCGCGTGTCAGCATGGTTTTACACATCGTCCAAGCGGGGTGTGCCTTCGC
TACCGTGGGGTTGTGGATGGCGTTAACGAAAGCCTACCACTCCTCCCTCA
CCTCGGCCTTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGTATGGCAGG
TCATTCTATCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTATCAGCTGC
GGCATTGCACATCATGGCGGCCAAGAGCGTCGGTGCAATTGAGAAGCAAG
CAACGATTGAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGGCGGCGGAG
TCGGCTCGGAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAATATGATTTA
GGTTTAGAAGCGAGGTGGGATGGGAGGGAGGGAAGGGAGGGGGGAAGGGA
GGGGGAAGGGAAGGGAAGGGGAAAATGGGCATGCGTAAATTTTCCGTTTC
ACATCCTCAGATGCTTGCTTTAATTTGGGACTTTTTTTTAGGGGGGGACG
GGGGGAGGATCTGGGGACGGAATGGCGGGAGATAGGTATGACGTATGACT
AGCGGAGGTGTGCATCTGTTCATTTTGACTGTCTGCAGGAGTTTTGTTTG
AAGCAAGGCACAAATGAGAGGAGCGGCTTCGGTGTTTGCTTCCTCTGTGT
GCACTTAAAGAGAATAAAGGTAGGGGAAGGAAGAGAGCAAGAAGTGTTTG
CATCAGCAACCAAGATCAACCAACATGGGATCTTTGACAGGGCAGTAGAT
ACTGTAATACATGTCAAACATGGGGAAGAAGGAAAAGCGAGCAGGAAGAG
GCAAATAGTACCAAAGAACGAATAATGTGGTGTGTGTGTGAGT
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protein sequence of NO12G02950.1

>NO12G02950.1-protein ID=NO12G02950.1-protein|Name=NO12G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MTCFFKGLGFGLTLAPVILMIMSLLSQDWTLNTTSLIDISPKAEIYEDTI
DFRMGPFKTFMEAVQEETVVFSYTSYSDWCSPSASSFDNPSAHHLCRLLH
SVRATGVVTAILGGVTFLLYCILAFRSLKGQYIAKTARVSMVLHIVQAGC
AFATVGLWMALTKAYHSSLTSALDPEFASFRLPYGRSFYRVVVVGILALV
SAAALHIMAAKSVGAIEKQATIERKRSEFELREAAESARRQAEQELRAEN
MI*
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mRNA from alignment at chr12:813682..816366+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02950.1 ID=NO12G02950.1|Name=NO12G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp|location=Sequence derived from alignment at chr12:813682..816366+ (Nannochloropsis oceanica)
GCTGCAGCTAATTTTGGTGCTGCTCGTATCGGTCAAGGCCAAGTTGTCCA
GCCTACTCGTCACGTCCTCGTGTGCCCTCCGCAATTCCGTCCAAAAGACG
CCAACAGATTCCGCAGGGTCTTTGCCGAGCTGAACCTTGGCCCTGCTGTC
CTTTCGGGATTGCATCCGTGCTTCTTGTTGGGCTCGAAAGCGGGCTTGCA
TTTCAGTATGGCGTGTCGATGGCTCCGGGGTAGGAGGCGGCAGTGGAGTC
TTGATGGGAGGTTCCATTTTTTAAGCCACCGCGGAGAGATACTTGCCTGT
CTGTTTGTGTAGGATACAAGTTATCAGAGGGCCTGTCCTATAGGACCGTG
GATTGTAGGGGTTGCACTGTTCTCGCCCAAAACCTTACTGCTTTCAGAAT
CCCGAAGTCTGCGAATGGGCGACAAGGAACAAAATGAGTTGATTTGCAAA
AGAACAGTCCCCGGCTTGGACCAGTTTTTGCGAGGTGTGCCGGTGTATCC
ACGTGTCTTTGTAGCGCTTGCATGGGCATGGGCTTGGAGTGAGGACATTG
TTAATAAACAATGTGGTCTCATTGACAGCGCACTGCACAATCTAGACTCC
CAACCAACTCTCATCCAACCTACCAGGTGCAACAACTTTATTTCTCCAGA
CAATTCGCTTCTATGCACAGTTCTTCATCCAGCCCCCGACGGCATCGCAC
ACGACAATGCCGACCGAAGAATAGGATCCCTGTGTCTAGAGCTGTTTCAG
GACATGCGAGGTGCTATAATTTGCCTGGTTGTGGAGCCAACATGTCCACG
ACTGTTTGTTTCCCCGCTCCTGGCTCACCACCATAACCAGGATCAGATCC
TGTTTCGATGGCATGCTTTGCGCTGTGATGGCATCCACGCCATTCATTCA
AGCGCATGTCTGCACAACTCTGACTCCCCTGTGTACTACACGGTATACAA
ACAACAGGCGCTTGTCTACCGAAAAGCCCTCACTCATTCATCATGACGTG
CTTTTTCAAGGGACTCGGTACGTGCACTGAGAGTAGAGCATTATAGAGTG
GGAGAGAGAATTTATATGGAGTCGGTACTCGTACTTGTAAATGTGCCATA
TCAGTATGCGCATGAATAAGTCGTCATGTACATGTGGAGCGGTGTCTCAT
AACATTTTCCCCATTCAAGCTTTATGCTTATCTATCTCCGCCCCTCCTCT
AACCTCCTCATTTCCCGAATCACGCAGGCTTCGGCCTGACCCTCGCCCCC
GTGATTCTCATGATCATGTCCCTGCTGAGCCAAGGTATGTCTTAATTGGT
TGCAATTTTTTTTCTGTTAAAGCCATGCTGTTGGATGATATCCCTGACCT
TGGTCTGTCCCCTTTCCAACTCCTGACCACTTTACCATCCATGGCGTATA
TGGCACTCCCCCCCCCCCCGGTGTAGCTCCCAACTTTTTCTGCTTTCCAC
TCTTTTTGATGTTTATCGTCTCTCCTGTCACTCCACTTCTTTCCTTCCTC
TCTCCTTCCTTTCTAGATTGGACGTTGAACACGACGAGCCTGATCGATAT
TAGCCCCAAAGCCGAGATCTACGAGGACACGATCGACTTCCGTATGGGCC
CCTTTAAAACATTCATGGAGGCCGTGCAAGAAGAGACTGTGGTTTTCAGC
TACACCTCATACTCGGACTGGTGCTCCCCCTCGGCCTCGTCTTTCGACAA
CCCCTCCGCGCACCACCTCTGTCGCCTGCTGCACAGCGTGCGGGCCACGG
GGGTTGTAACCGCCATCCTTGGGGGGGTCACTTTCTTGCTATACTGTATC
CTTGCCTTCCGATCTCTCAAGGGGCAGTATATTGCCAAGACTGCGCGTGT
CAGCATGGTTTTACACATCGTCCAAGCGGGGTGTGCCTTCGCTACCGTGG
GGTTGTGGATGGCGTTAACGAAAGCCTACCACTCCTCCCTCACCTCGGCC
TTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGTATGGCAGGTCATTCTA
TCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTATCAGCTGCGGCATTGC
ACATCATGGCGGCCAAGAGCGTCGGTGCAATTGAGAAGCAAGCAACGATT
GAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGGCGGCGGAGTCGGCTCG
GAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAATATGATTTAGGTTTAGA
AGCGAGGTGGGATGGGAGGGAGGGAAGGGAGGGGGGAAGGGAGGGGGAAG
GGAAGGGAAGGGGAAAATGGGCATGCGTAAATTTTCCGTTTCACATCCTC
AGATGCTTGCTTTAATTTGGGACTTTTTTTTAGGGGGGGACGGGGGGAGG
ATCTGGGGACGGAATGGCGGGAGATAGGTATGACGTATGACTAGCGGAGG
TGTGCATCTGTTCATTTTGACTGTCTGCAGGAGTTTTGTTTGAAGCAAGG
CACAAATGAGAGGAGCGGCTTCGGTGTTTGCTTCCTCTGTGTGCACTTAA
AGAGAATAAAGGTAGGGGAAGGAAGAGAGCAAGAAGTGTTTGCATCAGCA
ACCAAGATCAACCAACATGGGATCTTTGACAGGGCAGTAGATACTGTAAT
ACATGTCAAACATGGGGAAGAAGGAAAAGCGAGCAGGAAGAGGCAAATAG
TACCAAAGAACGAATAATGTGGTGTGTGTGTGAGT
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Coding sequence (CDS) from alignment at chr12:813682..816366+

>NO12G02950.1 ID=NO12G02950.1|Name=NO12G02950.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr12:813682..816366+ (Nannochloropsis oceanica)
ATGACGTGCTTTTTCAAGGGACTCGGCTTCGGCCTGACCCTCGCCCCCGT
GATTCTCATGATCATGTCCCTGCTGAGCCAAGATTGGACGTTGAACACGA
CGAGCCTGATCGATATTAGCCCCAAAGCCGAGATCTACGAGGACACGATC
GACTTCCGTATGGGCCCCTTTAAAACATTCATGGAGGCCGTGCAAGAAGA
GACTGTGGTTTTCAGCTACACCTCATACTCGGACTGGTGCTCCCCCTCGG
CCTCGTCTTTCGACAACCCCTCCGCGCACCACCTCTGTCGCCTGCTGCAC
AGCGTGCGGGCCACGGGGGTTGTAACCGCCATCCTTGGGGGGGTCACTTT
CTTGCTATACTGTATCCTTGCCTTCCGATCTCTCAAGGGGCAGTATATTG
CCAAGACTGCGCGTGTCAGCATGGTTTTACACATCGTCCAAGCGGGGTGT
GCCTTCGCTACCGTGGGGTTGTGGATGGCGTTAACGAAAGCCTACCACTC
CTCCCTCACCTCGGCCTTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGT
ATGGCAGGTCATTCTATCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTA
TCAGCTGCGGCATTGCACATCATGGCGGCCAAGAGCGTCGGTGCAATTGA
GAAGCAAGCAACGATTGAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGG
CGGCGGAGTCGGCTCGGAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAAT
ATGATTTAG
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Synonyms
Publications