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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr12 | genome | chr12:813682..816366 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G02950.2 vs.
Match: EWM25736.1 (hypothetical protein Naga_100087g21 [Nannochloropsis gaditana]) HSP 1 Score: 261.5 bits (667), Expect = 2.400e-66 Identity = 137/233 (58.80%), Postives = 174/233 (74.68%), Query Frame = 0
Query: 1 MIMSLLSQDWTLNTTSLIDISPKAEIYEDTIDFRMGPFKTFMEAVQEETVVFSYTSYSDWCSPSASSFDNPSAHHLCRLLHSVRATGVVTAILGGVTFLLYCILAFRSLKGQYIAKTARVSMVLHIVQAGCAFATVGLWMALTKAYHSSLTSALDPEFASFRLPYGRSFYRVVVVGILALVSAAALHIMAAKSVGAIEKQATIERKRSEFELREAAESARRQAEQELRAENMI 234
M+ LL++DWT T SL+ I AEIYED IDF MGPF+TFME Q + VFS +Y WC+ AS+ + + LC LL V+AT V+ I GG+ FLLYC+LAFRSLKG+Y+A+TARV+M LHI QA AF ++GLW+AL + Y SSL S+L P FA F LP+GRSFYRVV+VGILALV+A LH MA +SV AI+K+ TI RKRSEFE++EAAE+AR QAE+EL+ E ++
Sbjct: 42 MLTCLLAKDWTSTTASLVKIDSHAEIYEDDIDFHMGPFRTFMEVTQGDEEVFSKNTYP-WCTQDASTLSHSADRRLCSLLQGVQATSVLAVITGGIAFLLYCMLAFRSLKGEYVARTARVAMSLHIAQAVLAFLSLGLWLALMRVYQSSLQSSLGPNFADFSLPHGRSFYRVVIVGILALVAAGGLHTMAGRSVSAIQKRETIARKRSEFEMKEAAEAARMQAEEELKVEQLV 273
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G02950.2 ID=NO12G02950.2|Name=NO12G02950.2|organism=Nannochloropsis oceanica|type=mRNA|length=2453bp
GCTGCAGCTAATTTTGGTGCTGCTCGTATCGGTCAAGGCCAAGTTGTCCA
GCCTACTCGTCACGTCCTCGTGTGCCCTCCGCAATTCCGTCCAAAAGACG
CCAACAGATTCCGCAGGGTCTTTGCCGAGCTGAACCTTGGCCCTGCTGTC
CTTTCGGGATTGCATCCGTGCTTCTTGTTGGGCTCGAAAGCGGGCTTGCA
TTTCAGTATGGCGTGTCGATGGCTCCGGGGTAGGAGGCGGCAGTGGAGTC
TTGATGGGAGGTTCCATTTTTTAAGCCACCGCGGAGAGATACTTGCCTGT
CTGTTTGTGTAGGATACAAGTTATCAGAGGGCCTGTCCTATAGGACCGTG
GATTGTAGGGGTTGCACTGTTCTCGCCCAAAACCTTACTGCTTTCAGAAT
CCCGAAGTCTGCGAATGGGCGACAAGGAACAAAATGAGTTGATTTGCAAA
AGAACAGTCCCCGGCTTGGACCAGTTTTTGCGAGGTGTGCCGGTGTATCC
ACGTGTCTTTGTAGCGCTTGCATGGGCATGGGCTTGGAGTGAGGACATTG
TTAATAAACAATGTGGTCTCATTGACAGCGCACTGCACAATCTAGACTCC
CAACCAACTCTCATCCAACCTACCAGGTGCAACAACTTTATTTCTCCAGA
CAATTCGCTTCTATGCACAGTTCTTCATCCAGCCCCCGACGGCATCGCAC
ACGACAATGCCGACCGAAGAATAGGATCCCTGTGTCTAGAGCTGTTTCAG
GACATGCGAGGTGCTATAATTTGCCTGGTTGTGGAGCCAACATGTCCACG
ACTGTTTGTTTCCCCGCTCCTGGCTCACCACCATAACCAGGATCAGATCC
TGTTTCGATGGCATGCTTTGCGCTGTGATGGCATCCACGCCATTCATTCA
AGCGCATGTCTGCACAACTCTGACTCCCCTGTGTACTACACGGTATACAA
ACAACAGGCGCTTGTCTACCGAAAAGCCCTCACTCATTCATCATGACGTG
CTTTTTCAAGGGACTCGGTACGTGCACTGAGAGTAGAGCATTATAGAGTG
GGAGAGAGAATTTATATGGAGTCGGTACTCGTACTTGTAAATGTGCCATA
TCAGTATGCGCATGAATAAGTCGTCATGTACATGTGGAGCGGTGTCTCAT
AACATTTTCCCCATTCAAGCTTTATGCTTATCTATCTCCGCCCCTCCTCT
AACCTCCTCATTTCCCGAATCACGCAGGCTTCGGCCTGACCCTCGCCCCC
GTGATTCTCATGATCATGTCCCTGCTGAGCCAAGATTGGACGTTGAACAC
GACGAGCCTGATCGATATTAGCCCCAAAGCCGAGATCTACGAGGACACGA
TCGACTTCCGTATGGGCCCCTTTAAAACATTCATGGAGGCCGTGCAAGAA
GAGACTGTGGTTTTCAGCTACACCTCATACTCGGACTGGTGCTCCCCCTC
GGCCTCGTCTTTCGACAACCCCTCCGCGCACCACCTCTGTCGCCTGCTGC
ACAGCGTGCGGGCCACGGGGGTTGTAACCGCCATCCTTGGGGGGGTCACT
TTCTTGCTATACTGTATCCTTGCCTTCCGATCTCTCAAGGGGCAGTATAT
TGCCAAGACTGCGCGTGTCAGCATGGTTTTACACATCGTCCAAGCGGGGT
GTGCCTTCGCTACCGTGGGGTTGTGGATGGCGTTAACGAAAGCCTACCAC
TCCTCCCTCACCTCGGCCTTGGACCCGGAGTTTGCGAGTTTCCGCTTGCC
GTATGGCAGGTCATTCTATCGTGTGGTGGTCGTGGGGATCCTGGCGTTGG
TATCAGCTGCGGCATTGCACATCATGGCGGCCAAGAGCGTCGGTGCAATT
GAGAAGCAAGCAACGATTGAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGA
GGCGGCGGAGTCGGCTCGGAGACAGGCAGAGCAGGAGCTAAGAGCTGAAA
ATATGATTTAGGTTTAGAAGCGAGGTGGGATGGGAGGGAGGGAAGGGAGG
GGGGAAGGGAGGGGGAAGGGAAGGGAAGGGGAAAATGGGCATGCGTAAAT
TTTCCGTTTCACATCCTCAGATGCTTGCTTTAATTTGGGACTTTTTTTTA
GGGGGGGACGGGGGGAGGATCTGGGGACGGAATGGCGGGAGATAGGTATG
ACGTATGACTAGCGGAGGTGTGCATCTGTTCATTTTGACTGTCTGCAGGA
GTTTTGTTTGAAGCAAGGCACAAATGAGAGGAGCGGCTTCGGTGTTTGCT
TCCTCTGTGTGCACTTAAAGAGAATAAAGGTAGGGGAAGGAAGAGAGCAA
GAAGTGTTTGCATCAGCAACCAAGATCAACCAACATGGGATCTTTGACAG
GGCAGTAGATACTGTAATACATGTCAAACATGGGGAAGAAGGAAAAGCGA
GCAGGAAGAGGCAAATAGTACCAAAGAACGAATAATGTGGTGTGTGTGTG
AGT back to topprotein sequence of NO12G02950.2 >NO12G02950.2-protein ID=NO12G02950.2-protein|Name=NO12G02950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MIMSLLSQDWTLNTTSLIDISPKAEIYEDTIDFRMGPFKTFMEAVQEETV
VFSYTSYSDWCSPSASSFDNPSAHHLCRLLHSVRATGVVTAILGGVTFLL
YCILAFRSLKGQYIAKTARVSMVLHIVQAGCAFATVGLWMALTKAYHSSL
TSALDPEFASFRLPYGRSFYRVVVVGILALVSAAALHIMAAKSVGAIEKQ
ATIERKRSEFELREAAESARRQAEQELRAENMI* back to topmRNA from alignment at chr12:813682..816366+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G02950.2 ID=NO12G02950.2|Name=NO12G02950.2|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp|location=Sequence derived from alignment at chr12:813682..816366+ (Nannochloropsis oceanica)
GCTGCAGCTAATTTTGGTGCTGCTCGTATCGGTCAAGGCCAAGTTGTCCA
GCCTACTCGTCACGTCCTCGTGTGCCCTCCGCAATTCCGTCCAAAAGACG
CCAACAGATTCCGCAGGGTCTTTGCCGAGCTGAACCTTGGCCCTGCTGTC
CTTTCGGGATTGCATCCGTGCTTCTTGTTGGGCTCGAAAGCGGGCTTGCA
TTTCAGTATGGCGTGTCGATGGCTCCGGGGTAGGAGGCGGCAGTGGAGTC
TTGATGGGAGGTTCCATTTTTTAAGCCACCGCGGAGAGATACTTGCCTGT
CTGTTTGTGTAGGATACAAGTTATCAGAGGGCCTGTCCTATAGGACCGTG
GATTGTAGGGGTTGCACTGTTCTCGCCCAAAACCTTACTGCTTTCAGAAT
CCCGAAGTCTGCGAATGGGCGACAAGGAACAAAATGAGTTGATTTGCAAA
AGAACAGTCCCCGGCTTGGACCAGTTTTTGCGAGGTGTGCCGGTGTATCC
ACGTGTCTTTGTAGCGCTTGCATGGGCATGGGCTTGGAGTGAGGACATTG
TTAATAAACAATGTGGTCTCATTGACAGCGCACTGCACAATCTAGACTCC
CAACCAACTCTCATCCAACCTACCAGGTGCAACAACTTTATTTCTCCAGA
CAATTCGCTTCTATGCACAGTTCTTCATCCAGCCCCCGACGGCATCGCAC
ACGACAATGCCGACCGAAGAATAGGATCCCTGTGTCTAGAGCTGTTTCAG
GACATGCGAGGTGCTATAATTTGCCTGGTTGTGGAGCCAACATGTCCACG
ACTGTTTGTTTCCCCGCTCCTGGCTCACCACCATAACCAGGATCAGATCC
TGTTTCGATGGCATGCTTTGCGCTGTGATGGCATCCACGCCATTCATTCA
AGCGCATGTCTGCACAACTCTGACTCCCCTGTGTACTACACGGTATACAA
ACAACAGGCGCTTGTCTACCGAAAAGCCCTCACTCATTCATCATGACGTG
CTTTTTCAAGGGACTCGGTACGTGCACTGAGAGTAGAGCATTATAGAGTG
GGAGAGAGAATTTATATGGAGTCGGTACTCGTACTTGTAAATGTGCCATA
TCAGTATGCGCATGAATAAGTCGTCATGTACATGTGGAGCGGTGTCTCAT
AACATTTTCCCCATTCAAGCTTTATGCTTATCTATCTCCGCCCCTCCTCT
AACCTCCTCATTTCCCGAATCACGCAGGCTTCGGCCTGACCCTCGCCCCC
GTGATTCTCATGATCATGTCCCTGCTGAGCCAAGGTATGTCTTAATTGGT
TGCAATTTTTTTTCTGTTAAAGCCATGCTGTTGGATGATATCCCTGACCT
TGGTCTGTCCCCTTTCCAACTCCTGACCACTTTACCATCCATGGCGTATA
TGGCACTCCCCCCCCCCCCGGTGTAGCTCCCAACTTTTTCTGCTTTCCAC
TCTTTTTGATGTTTATCGTCTCTCCTGTCACTCCACTTCTTTCCTTCCTC
TCTCCTTCCTTTCTAGATTGGACGTTGAACACGACGAGCCTGATCGATAT
TAGCCCCAAAGCCGAGATCTACGAGGACACGATCGACTTCCGTATGGGCC
CCTTTAAAACATTCATGGAGGCCGTGCAAGAAGAGACTGTGGTTTTCAGC
TACACCTCATACTCGGACTGGTGCTCCCCCTCGGCCTCGTCTTTCGACAA
CCCCTCCGCGCACCACCTCTGTCGCCTGCTGCACAGCGTGCGGGCCACGG
GGGTTGTAACCGCCATCCTTGGGGGGGTCACTTTCTTGCTATACTGTATC
CTTGCCTTCCGATCTCTCAAGGGGCAGTATATTGCCAAGACTGCGCGTGT
CAGCATGGTTTTACACATCGTCCAAGCGGGGTGTGCCTTCGCTACCGTGG
GGTTGTGGATGGCGTTAACGAAAGCCTACCACTCCTCCCTCACCTCGGCC
TTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGTATGGCAGGTCATTCTA
TCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTATCAGCTGCGGCATTGC
ACATCATGGCGGCCAAGAGCGTCGGTGCAATTGAGAAGCAAGCAACGATT
GAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGGCGGCGGAGTCGGCTCG
GAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAATATGATTTAGGTTTAGA
AGCGAGGTGGGATGGGAGGGAGGGAAGGGAGGGGGGAAGGGAGGGGGAAG
GGAAGGGAAGGGGAAAATGGGCATGCGTAAATTTTCCGTTTCACATCCTC
AGATGCTTGCTTTAATTTGGGACTTTTTTTTAGGGGGGGACGGGGGGAGG
ATCTGGGGACGGAATGGCGGGAGATAGGTATGACGTATGACTAGCGGAGG
TGTGCATCTGTTCATTTTGACTGTCTGCAGGAGTTTTGTTTGAAGCAAGG
CACAAATGAGAGGAGCGGCTTCGGTGTTTGCTTCCTCTGTGTGCACTTAA
AGAGAATAAAGGTAGGGGAAGGAAGAGAGCAAGAAGTGTTTGCATCAGCA
ACCAAGATCAACCAACATGGGATCTTTGACAGGGCAGTAGATACTGTAAT
ACATGTCAAACATGGGGAAGAAGGAAAAGCGAGCAGGAAGAGGCAAATAG
TACCAAAGAACGAATAATGTGGTGTGTGTGTGAGT back to topCoding sequence (CDS) from alignment at chr12:813682..816366+ >NO12G02950.2 ID=NO12G02950.2|Name=NO12G02950.2|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr12:813682..816366+ (Nannochloropsis oceanica)
ATGATCATGTCCCTGCTGAGCCAAGATTGGACGTTGAACACGACGAGCCT
GATCGATATTAGCCCCAAAGCCGAGATCTACGAGGACACGATCGACTTCC
GTATGGGCCCCTTTAAAACATTCATGGAGGCCGTGCAAGAAGAGACTGTG
GTTTTCAGCTACACCTCATACTCGGACTGGTGCTCCCCCTCGGCCTCGTC
TTTCGACAACCCCTCCGCGCACCACCTCTGTCGCCTGCTGCACAGCGTGC
GGGCCACGGGGGTTGTAACCGCCATCCTTGGGGGGGTCACTTTCTTGCTA
TACTGTATCCTTGCCTTCCGATCTCTCAAGGGGCAGTATATTGCCAAGAC
TGCGCGTGTCAGCATGGTTTTACACATCGTCCAAGCGGGGTGTGCCTTCG
CTACCGTGGGGTTGTGGATGGCGTTAACGAAAGCCTACCACTCCTCCCTC
ACCTCGGCCTTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGTATGGCAG
GTCATTCTATCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTATCAGCTG
CGGCATTGCACATCATGGCGGCCAAGAGCGTCGGTGCAATTGAGAAGCAA
GCAACGATTGAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGGCGGCGGA
GTCGGCTCGGAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAATATGATTT
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