NO12G00880, NO12G00880 (gene) Nannochloropsis oceanica

Overview
NameNO12G00880
Unique NameNO12G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr12:289397..290479 -

Link to JBrowse

Properties
Property NameValue
DescriptionNuclear receptor 2c2-associated protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:289397..290479 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR033601NR2C2AP
IPR004939APC_su10/DOC_dom
Homology
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_005854168.1 (nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526] >XP_005854271.1 nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526] >EKU22089.1 nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526] >EKU22191.1 nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 162.5 bits (410), Expect = 1.500e-36
Identity = 101/244 (41.39%), Postives = 126/244 (51.64%), Query Frame = 0
Query:    3 ALVDLTAPSTTTKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKT----KAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKP--------------------PMVTDMRLTFLSSFDFYGRITAYQLAVLGWEQGE 223
            A  DL+APST TKV+VSSVL+RNV+EFG AH+FDGS D+CWNSDQG+PQWI L+F RPV +  + +MFQGGFA +EMQV VTFHTP                               PP         G    T    K+   LV +F P+DDN  QSF L      TAA  A  +   A++  A   +                       V +M+LTF  S DFYGR+T Y+LAV G E+ +
Sbjct:    2 AFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLQMKSRPMLVGTFYPDDDNKSQSFEL------TAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQ 239          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: EWM25921.1 (nuclear receptor 2c2-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 162.5 bits (410), Expect = 1.500e-36
Identity = 101/244 (41.39%), Postives = 126/244 (51.64%), Query Frame = 0
Query:    3 ALVDLTAPSTTTKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKT----KAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKP--------------------PMVTDMRLTFLSSFDFYGRITAYQLAVLGWEQGE 223
            A  DL+APST TKV+VSSVL+RNV+EFG AH+FDGS D+CWNSDQG+PQWI L+F RPV +  + +MFQGGFA +EMQV VTFHTP                               PP         G    T    K+   LV +F P+DDN  QSF L      TAA  A  +   A++  A   +                       V +M+LTF  S DFYGR+T Y+LAV G E+ +
Sbjct:    2 AFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFEL------TAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQ 239          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_013389358.1 (nuclear receptor 2C2-associated protein [Lingula anatina])

HSP 1 Score: 104.4 bits (259), Expect = 4.800e-19
Identity = 70/201 (34.83%), Postives = 87/201 (43.28%), Query Frame = 0
Query:   17 RVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLG 218
            RVSSVLNR+VK+FG   L DG  +TCWNSDQGSPQW+ L+F + V I  + I FQGGFA +E  V V                                                   K+   ++L T   P D N LQ F L+                         P PP V+ +R+ F SS DFYGRIT Y+L V+G
Sbjct:   13 RVSSVLNRDVKQFGKKFLLDGDDETCWNSDQGSPQWVLLEFSKQVVIEELHIQFQGGFAGKECHVEV------------------------------------------------ASIKSDEFTEL-TKIFPEDSNKLQVFTLT-------------------------PAPP-VSKLRIVFTSSTDFYGRITIYKLDVIG 138          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_021345894.1 (nuclear receptor 2C2-associated protein-like [Mizuhopecten yessoensis])

HSP 1 Score: 103.6 bits (257), Expect = 8.200e-19
Identity = 70/217 (32.26%), Postives = 93/217 (42.86%), Query Frame = 0
Query:    1 MEALVDLTAPSTTTKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLG 218
            M A+VD      +T+VRVSSVLNR+ K+FG  +LFDG  DTCWNSDQGSPQWI +      ++  +QI FQGGFA ++  +                                             +A  G   +       +  F P D NSLQ F L                          P+P  ++  R+ F +S DF+GRIT YQL +LG
Sbjct:    1 MTAVVD-----GSTRVRVSSVLNRDTKQFGKKYLFDGEEDTCWNSDQGSPQWIHINLDSDCNVEEVQIKFQGGFAGKDCCL---------------------------------------------EAHNGEEIQK------IMDFYPEDINSLQIFKL--------------------------PQPLKMSSFRIVFTNSTDFFGRITIYQLMILG 135          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_013405497.1 (nuclear receptor 2C2-associated protein [Lingula anatina])

HSP 1 Score: 103.2 bits (256), Expect = 1.100e-18
Identity = 70/201 (34.83%), Postives = 85/201 (42.29%), Query Frame = 0
Query:   17 RVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLG 218
            RVSSVLNR+VK+FG   L DG  +TCWNSDQGSPQW+ L+F + V I  + I FQGGFA +E  V V                                      FT                   +T   P D N LQ F L+                         P PP V+ +R+ F SS DFYGRIT Y+L V+G
Sbjct:   13 RVSSVLNRDVKQFGKKFLLDGDDETCWNSDQGSPQWVLLEFSKQVVIEELHIQFQGGFAGKECHVQVA-------------------------------SIESDEFT------------------ELTKIFPEDSNKLQVFTLT-------------------------PAPP-VSKLRIVFTSSTDFYGRITIYKLDVIG 138          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_006814006.1 (PREDICTED: nuclear receptor 2C2-associated protein-like [Saccoglossus kowalevskii])

HSP 1 Score: 100.9 bits (250), Expect = 5.300e-18
Identity = 63/204 (30.88%), Postives = 88/204 (43.14%), Query Frame = 0
Query:   14 TKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLG 218
            +K++VSS LNR+VK+FG  ++FD   +TCWNSDQGSPQW+ ++F   + +  + I FQGGF  +E  +                                            +D T      TK     +  F P D NSLQSFHL                          P   + T +++ F SS DFYGRIT Y+L ++G
Sbjct:   10 SKIKVSSTLNRDVKQFGKKYMFDDDEETCWNSDQGSPQWVVMEFPHQIRLQELMIQFQGGFVGKECWIE----------------------------------------GCHDDET-----MTK-----ILDFYPEDVNSLQSFHL--------------------------PTDQLFTKVKIIFNSSTDFYGRITIYKLDLIG 137          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_012671047.1 (PREDICTED: nuclear receptor 2C2-associated protein [Clupea harengus])

HSP 1 Score: 100.5 bits (249), Expect = 7.000e-18
Identity = 63/206 (30.58%), Postives = 89/206 (43.20%), Query Frame = 0
Query:   12 TTTKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLG 218
            ++T+ RVSSVLNR+VK+FG  ++FD + +TCWNSDQG  QW++L+F + V +  +++ FQGGF+    +    FH  L                                                    L+T F P DDNSLQSF + E                           P V  M++ F +S DF+GRI  Y L +LG
Sbjct:   19 SSTQSRVSSVLNRDVKQFGKKYMFDSNEETCWNSDQGDAQWVFLEFPQSVRVTELRLQFQGGFSGRTCR----FHGCLQDNDFA----------------------------------------------LITDFYPEDDNSLQSFPIQE--------------------------APPVHKMKIVFENSADFFGRIIIYSLDILG 148          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_016611789.1 (hypothetical protein SPPG_01206 [Spizellomyces punctatus DAOM BR117] >KND03750.1 hypothetical protein SPPG_01206 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 100.5 bits (249), Expect = 7.000e-18
Identity = 72/210 (34.29%), Postives = 96/210 (45.71%), Query Frame = 0
Query:   14 TKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQ-RPVHIHTIQIMFQGGFAAEEMQ-VGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLGWEQG 222
            T +RVSS LNR+VK +G   L DG+ +TCWNSDQG+PQ+I + F  R V +  ++IMFQGGFA +E + VGV  H                                              RP+ +   DL+ +F P D NSLQ F + E                       A K P    +R+ FL+S DFYGR+T Y+L V+G   G
Sbjct:   12 TAIRVSSTLNRDVKAYGKHFLTDGNDETCWNSDQGTPQYISMDFSPRSVLVSELRIMFQGGFAGKECKLVGVADHR---------------------------------------------RPEEEQWEDLL-NFYPEDSNSLQVFPIKE----------------------GASKQPW-RKLRVIFLNSTDFYGRVTIYRLEVVGEANG 152          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_024074861.1 (nuclear receptor 2C2-associated protein [Terrapene mexicana triunguis] >XP_024074862.1 nuclear receptor 2C2-associated protein [Terrapene mexicana triunguis] >XP_024074863.1 nuclear receptor 2C2-associated protein [Terrapene mexicana triunguis])

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-17
Identity = 64/204 (31.37%), Postives = 88/204 (43.14%), Query Frame = 0
Query:   14 TKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLG 218
            T  RVSSVLNR+ K+FG  H+FDGS +TCWNSDQGS QW+ L+F + V +  +QI FQGGFA++   +                                                 G R   +     ++ F P D N+LQSF   E                            M+  +++TF +S DF+GRI  Y+L+VLG
Sbjct:   11 TVSRVSSVLNRDAKQFGKKHMFDGSEETCWNSDQGSSQWVMLEFPQTVKVSQLQIQFQGGFASQLCTL------------------------------------------------EGGRKGEELVK--ISDFYPEDINALQSFRTEE---------------------------TMLDKLKITFENSTDFFGRIVVYRLSVLG 137          
BLAST of NO12G00880 vs. NCBI_GenBank
Match: XP_020824898.1 (nuclear receptor 2C2-associated protein [Phascolarctos cinereus] >XP_020824899.1 nuclear receptor 2C2-associated protein [Phascolarctos cinereus] >XP_020824900.1 nuclear receptor 2C2-associated protein [Phascolarctos cinereus] >XP_020824902.1 nuclear receptor 2C2-associated protein [Phascolarctos cinereus])

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-17
Identity = 65/204 (31.86%), Postives = 92/204 (45.10%), Query Frame = 0
Query:   14 TKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLG 218
            T  RVSSVLNR+VK+FG  HLFD   +TCWNSDQGS QW+ L+F +PV +  +QI FQGGFA+ + ++                                                 G R +   + + +  F P D+NSLQSF +++   VT                        +  +++TF +S DF+GRI  Y L +LG
Sbjct:   12 TVSRVSSVLNRDVKQFGKKHLFDEQDETCWNSDQGSSQWVMLEFPQPVRVSQVQIQFQGGFASRQGRL-----------------------------------------------EGGRRSE---SLEKIGDFYPQDNNSLQSFAVAD---VT------------------------LDKLKVTFENSTDFFGRIIIYHLRILG 138          
The following BLAST results are available for this feature:
BLAST of NO12G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854168.11.500e-3641.39nuclear receptor 2c2-associated protein [Nannochlo... [more]
EWM25921.11.500e-3641.39nuclear receptor 2c2-associated protein [Nannochlo... [more]
XP_013389358.14.800e-1934.83nuclear receptor 2C2-associated protein [Lingula a... [more]
XP_021345894.18.200e-1932.26nuclear receptor 2C2-associated protein-like [Mizu... [more]
XP_013405497.11.100e-1834.83nuclear receptor 2C2-associated protein [Lingula a... [more]
XP_006814006.15.300e-1830.88PREDICTED: nuclear receptor 2C2-associated protein... [more]
XP_012671047.17.000e-1830.58PREDICTED: nuclear receptor 2C2-associated protein... [more]
XP_016611789.17.000e-1834.29hypothetical protein SPPG_01206 [Spizellomyces pun... [more]
XP_024074861.11.200e-1731.37nuclear receptor 2C2-associated protein [Terrapene... [more]
XP_020824898.11.600e-1731.86nuclear receptor 2C2-associated protein [Phascolar... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00880.2NO12G00880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00880.1NO12G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674653gene_9999Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100134g4gene4588Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00880.2NO12G00880.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00880.1NO12G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00880 ID=NO12G00880|Name=NO12G00880|organism=Nannochloropsis oceanica|type=gene|length=1083bp
ACGACTTCCTCCCGTGGTCTCGCAATCCACTTCAATACTTCCTCAGGGCC
CGACCAACCACGACAGACAAACACACCCGCTATTTCTCCTTCTTCTTCCG
TTCTCGGATATGGAGGCGCTTGTGGACTTGACCGCACCGTCCACTACGAC
CAAAGTCAGgtacgtcgatcatcattatctcttgcccaggccccgccccg
ccttacctcgcctttgcatcccacggaccgacttgcccgttcacctcttt
attacacgtccacttccacagGGTTTCTTCCGTTCTCAATCGCAACGTCA
AAGAATTTGGAGTCGCGCACCTGTTTGATGGAAGCCCTGACACTTGCTGG
AACTCAGACCAGGTGAAAGTCTCCACTTTGAAATAGCATCTCGTTTTTCA
TGGTTTGTCGATGTTGAGGACCCTTTCTCGCAGTCAAAAATATCTTCGTT
GTGCCCTGCACACTCCACCGCATCAGCACTGTCTTGGTCTCTTGATTGCC
TGCTCATCCCCTTGACCCACTTGTCCTCCTCCCTACTCCACAGGGCTCGC
CGCAGTGGATTTGGCTGCAGTTCCAGCGACCTGTTCACATCCATACCATT
CAAATTATGTTCCAGGGTGGCTTTGCCGCAGAAGAAATGCAAGTGGGCGT
AACTTTTCATACCCCACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCC
TCCTCCGTCCCACCATTTACATTATTCGAAGACGCAACTGCAGGAGTACG
GCCCAAAACAAAAGCAGCCTCCGACCTTGTCACTAGTTTTTGCCCGAACG
ATGACAACAGCTTACAATCATTCCATTTGTCGGAACCCATCGCCGTGACA
GCAGCAGCACTAGCAGTTGGTGAAGCAGGACGTGCAGCAATAGAAGCAGC
AGCAGCACCAAAACCACCAATGGTGACAGACATGCGCCTGACTTTTTTGA
GTAGTTTTGATTTTTATGGCCGTATCACGGCGTACCAGCTGGCAGTGCTG
GGATGGGAGCAAGGTGAAGAGGAAGGGAGATAG
back to top

protein sequence of NO12G00880.2

>NO12G00880.2-protein ID=NO12G00880.2-protein|Name=NO12G00880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MFQGGFAAEEMQVGVTFHTPLSPPPPPPPPPPPPPPPPPPPPPPSPSPSS
VPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAA
ALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLSSFDFYGRITAYQLAVLGW
EQGEEEGR*
back to top

protein sequence of NO12G00880.1

>NO12G00880.1-protein ID=NO12G00880.1-protein|Name=NO12G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MEALVDLTAPSTTTKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSP
QWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPPPPPPPPPP
PPPPPPPPPPPPSPSPSSVPPFTLFEDATAGVRPKTKAASDLVTSFCPND
DNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLS
SFDFYGRITAYQLAVLGWEQGEEEGR*
back to top
Synonyms
Publications