NO12G00880.1, NO12G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00880.1
Unique NameNO12G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length790
Alignment locationchr12:289397..290479 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:289397..290479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00880.1 vs.
Match: XP_005854168.1 (nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526]; XP_005854271.1 nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526]; EKU22089.1 nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526]; EKU22191.1 nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.8 bits (325), Expect = 1.100e-26
Identity = 108/239 (45.19%), Postives = 135/239 (56.49%), Query Frame = 0 
Query:    3 ALVDLTAPSTTTKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSPQWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTP-LSPPPPPPPPPPPPPPPPPPPP----PPSPSPSSVPPFTLFEDATAGVRPKTKAASDLVTSFCPNDDNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAA---PKPP-----------MVTDMRLTFLSSFDFYGRITAYQLAVLGWEQGE 223
            A  DL+APST TKV+VSSVL+RNV+EFG AH+FDGS D+CWNSDQG+PQWI L+F RPV +  + +MFQGGFA +EMQV VTFHTP LS  P P   P  P       P      SP PS  P  ++     +    + K+   LV +F P+DDN  QSF L+  I   A        G    E        + P            V +M+LTF  S DFYGR+T Y+LAV G E+ +
Sbjct:    2 AFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSK-PRTSVVNGKDSSTTLQMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQ 239
The following BLAST results are available for this feature:
BLAST of NO12G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854168.11.100e-2645.19nuclear receptor 2c2-associated protein [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00880NO12G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00880.1NO12G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00880.1.cds1NO12G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00880.1.cds2NO12G00880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00880.1.cds3NO12G00880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00880.1 ID=NO12G00880.1|Name=NO12G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=790bp
ACGACTTCCTCCCGTGGTCTCGCAATCCACTTCAATACTTCCTCAGGGCC
CGACCAACCACGACAGACAAACACACCCGCTATTTCTCCTTCTTCTTCCG
TTCTCGGATATGGAGGCGCTTGTGGACTTGACCGCACCGTCCACTACGAC
CAAAGTCAGGGTTTCTTCCGTTCTCAATCGCAACGTCAAAGAATTTGGAG
TCGCGCACCTGTTTGATGGAAGCCCTGACACTTGCTGGAACTCAGACCAG
GGCTCGCCGCAGTGGATTTGGCTGCAGTTCCAGCGACCTGTTCACATCCA
TACCATTCAAATTATGTTCCAGGGTGGCTTTGCCGCAGAAGAAATGCAAG
TGGGCGTAACTTTTCATACCCCACTTTCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCC
TTCTCCCTCCTCCGTCCCACCATTTACATTATTCGAAGACGCAACTGCAG
GAGTACGGCCCAAAACAAAAGCAGCCTCCGACCTTGTCACTAGTTTTTGC
CCGAACGATGACAACAGCTTACAATCATTCCATTTGTCGGAACCCATCGC
CGTGACAGCAGCAGCACTAGCAGTTGGTGAAGCAGGACGTGCAGCAATAG
AAGCAGCAGCAGCACCAAAACCACCAATGGTGACAGACATGCGCCTGACT
TTTTTGAGTAGTTTTGATTTTTATGGCCGTATCACGGCGTACCAGCTGGC
AGTGCTGGGATGGGAGCAAGGTGAAGAGGAAGGGAGATAG
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protein sequence of NO12G00880.1

>NO12G00880.1-protein ID=NO12G00880.1-protein|Name=NO12G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MEALVDLTAPSTTTKVRVSSVLNRNVKEFGVAHLFDGSPDTCWNSDQGSP
QWIWLQFQRPVHIHTIQIMFQGGFAAEEMQVGVTFHTPLSPPPPPPPPPP
PPPPPPPPPPPPSPSPSSVPPFTLFEDATAGVRPKTKAASDLVTSFCPND
DNSLQSFHLSEPIAVTAAALAVGEAGRAAIEAAAAPKPPMVTDMRLTFLS
SFDFYGRITAYQLAVLGWEQGEEEGR*
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mRNA from alignment at chr12:289397..290479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00880.1 ID=NO12G00880.1|Name=NO12G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp|location=Sequence derived from alignment at chr12:289397..290479- (Nannochloropsis oceanica)
ACGACTTCCTCCCGTGGTCTCGCAATCCACTTCAATACTTCCTCAGGGCC
CGACCAACCACGACAGACAAACACACCCGCTATTTCTCCTTCTTCTTCCG
TTCTCGGATATGGAGGCGCTTGTGGACTTGACCGCACCGTCCACTACGAC
CAAAGTCAGGTACGTCGATCATCATTATCTCTTGCCCAGGCCCCGCCCCG
CCTTACCTCGCCTTTGCATCCCACGGACCGACTTGCCCGTTCACCTCTTT
ATTACACGTCCACTTCCACAGGGTTTCTTCCGTTCTCAATCGCAACGTCA
AAGAATTTGGAGTCGCGCACCTGTTTGATGGAAGCCCTGACACTTGCTGG
AACTCAGACCAGGTGAAAGTCTCCACTTTGAAATAGCATCTCGTTTTTCA
TGGTTTGTCGATGTTGAGGACCCTTTCTCGCAGTCAAAAATATCTTCGTT
GTGCCCTGCACACTCCACCGCATCAGCACTGTCTTGGTCTCTTGATTGCC
TGCTCATCCCCTTGACCCACTTGTCCTCCTCCCTACTCCACAGGGCTCGC
CGCAGTGGATTTGGCTGCAGTTCCAGCGACCTGTTCACATCCATACCATT
CAAATTATGTTCCAGGGTGGCTTTGCCGCAGAAGAAATGCAAGTGGGCGT
AACTTTTCATACCCCACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCC
TCCTCCGTCCCACCATTTACATTATTCGAAGACGCAACTGCAGGAGTACG
GCCCAAAACAAAAGCAGCCTCCGACCTTGTCACTAGTTTTTGCCCGAACG
ATGACAACAGCTTACAATCATTCCATTTGTCGGAACCCATCGCCGTGACA
GCAGCAGCACTAGCAGTTGGTGAAGCAGGACGTGCAGCAATAGAAGCAGC
AGCAGCACCAAAACCACCAATGGTGACAGACATGCGCCTGACTTTTTTGA
GTAGTTTTGATTTTTATGGCCGTATCACGGCGTACCAGCTGGCAGTGCTG
GGATGGGAGCAAGGTGAAGAGGAAGGGAGATAG
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Coding sequence (CDS) from alignment at chr12:289397..290479-

>NO12G00880.1 ID=NO12G00880.1|Name=NO12G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at chr12:289397..290479- (Nannochloropsis oceanica)
ATGGAGGCGCTTGTGGACTTGACCGCACCGTCCACTACGACCAAAGTCAG
GGTTTCTTCCGTTCTCAATCGCAACGTCAAAGAATTTGGAGTCGCGCACC
TGTTTGATGGAAGCCCTGACACTTGCTGGAACTCAGACCAGGGCTCGCCG
CAGTGGATTTGGCTGCAGTTCCAGCGACCTGTTCACATCCATACCATTCA
AATTATGTTCCAGGGTGGCTTTGCCGCAGAAGAAATGCAAGTGGGCGTAA
CTTTTCATACCCCACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCCTC
CTCCGTCCCACCATTTACATTATTCGAAGACGCAACTGCAGGAGTACGGC
CCAAAACAAAAGCAGCCTCCGACCTTGTCACTAGTTTTTGCCCGAACGAT
GACAACAGCTTACAATCATTCCATTTGTCGGAACCCATCGCCGTGACAGC
AGCAGCACTAGCAGTTGGTGAAGCAGGACGTGCAGCAATAGAAGCAGCAG
CAGCACCAAAACCACCAATGGTGACAGACATGCGCCTGACTTTTTTGAGT
AGTTTTGATTTTTATGGCCGTATCACGGCGTACCAGCTGGCAGTGCTGGG
ATGGGAGCAAGGTGAAGAGGAAGGGAGATAG
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Synonyms
Publications